TFIIS helical bundle-like domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48050 AT3G48050 AT3G48060 AT3G48060 AT3G48060 |
| fragaria_vesca | FvH4_5g16640 FvH4_5g16640 FvH4_5g16640 FvH4_5g16640 |
| malus_domestica | MD06G1178400.v1.1 MD14G1184800.v1.1 |
| prunus_persica | Prupe.5G177500_v2.0.a1 Prupe.5G177500_v2.0.a1 |
| pyrus_communis | pycom06g15860 pycom14g15380 |
| rosa_chinensis | RchiOBHm_Chr7g0179511 |
| rosa_laevigata | RLG00000005348 |
| rosa_multiflora | Rmu_sc0000735.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00273930 |
| rosa_rugosa | Rorug06G0424900 Rorug06G0424900 Rorug06G0425000.1 |
| rosa_samantha | Rh7AG024900 Rh7BG024100 Rh7CG025500 Rh7DG025300 |
| rosa_wichuraiana | Rw7G002000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 2038, 4280 |
| Acc16I | TGCGCA | 1 cut(s) | 3696 |
| Acc36I | ACCTGC | 3 cut(s) | 1424, 2038, 4280 |
| Acc65I | GGTACC | 1 cut(s) | 1946 |
| AccB1I | GGYRCC | 4 cut(s) | 1414, 1946, 3718, 4613 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 4088 |
| AccBSI | CCGCTC | 1 cut(s) | 634 |
| AccI | GTMKAC | 3 cut(s) | 768, 2756, 4176 |
| AccII | CGCG | 2 cut(s) | 368, 2055 |
| AciI | CCGC | 7 cut(s) | 339, 634, 1105, 1824, 2244, 3210, 4611 |
| AclWI | GGATC | 3 cut(s) | 2014, 2906, 3753 |
| AcoI | YGGCCR | 5 cut(s) | 60, 556, 841, 2241, 3500 |
| AcsI | RAATTY | 5 cut(s) | 88, 303, 881, 3021, 3284 |
| AcyI | GRCGYC | 1 cut(s) | 3586 |
| AdeI | CACNNNGTG | 1 cut(s) | 1817 |
| AfaI | GTAC | 4 cut(s) | 1909, 1948, 2304, 3615 |
| AflIII | ACRYGT | 3 cut(s) | 42, 1168, 3109 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 646 |
| AjiI | CACGTC | 1 cut(s) | 4522 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 175, 207, 249, 281, 2074, 2106 |
| AleI | CACNNNNGTG | 1 cut(s) | 3003 |
| Alw21I | GWGCWC | 5 cut(s) | 145, 1313, 1619, 2297, 3012 |
| Alw26I | GTCTC | 5 cut(s) | 633, 1545, 2431, 2890, 4512 |
| AlwI | GGATC | 3 cut(s) | 2014, 2906, 3753 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2306, 3314, 4493 |
| Ama87I | CYCGRG | 3 cut(s) | 522, 2367, 3632 |
| ApaI | GGGCCC | 2 cut(s) | 2468, 3423 |
| ApoI | RAATTY | 5 cut(s) | 88, 303, 881, 3021, 3284 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1764, 1796, 4123, 4155 |
| AseI | ATTAAT | 2 cut(s) | 480, 1775 |
| Asp718I | GGTACC | 1 cut(s) | 1946 |
| AspLEI | GCGC | 2 cut(s) | 2055, 3697 |
| AsuC2I | CCSGG | 2 cut(s) | 1462, 3172 |
| AsuHPI | GGTGA | 8 cut(s) | 29, 146, 980, 1413, 2019, 2337, 3088, 4521 |
| AsuII | TTCGAA | 1 cut(s) | 86 |
| AvaI | CYCGRG | 3 cut(s) | 522, 2367, 3632 |
| AxyI | CCTNAGG | 1 cut(s) | 4635 |
| BaeGI | GKGCMC | 4 cut(s) | 1036, 2468, 3423, 3721 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2286, 2319 |
| BanI | GGYRCC | 4 cut(s) | 1414, 1946, 3718, 4613 |
| BanII | GRGCYC | 5 cut(s) | 1313, 1619, 2468, 2978, 3423 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2413, 2445, 4366, 4398 |
| Bbv12I | GWGCWC | 5 cut(s) | 145, 1313, 1619, 2297, 3012 |
| BbvCI | CCTCAGC | 1 cut(s) | 4578 |
| BceAI | ACGGC | 3 cut(s) | 75, 1402, 2972 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1599, 1633, 3905, 3939, 4278, 4312 |
| BciVI | GTATCC | 1 cut(s) | 1297 |
| BclI | TGATCA | 5 cut(s) | 466, 1570, 1894, 3046, 3700 |
| BcnI | CCSGG | 2 cut(s) | 1462, 3172 |
| BcoDI | GTCTC | 5 cut(s) | 633, 1545, 2431, 2890, 4512 |
| BfmI | CTRYAG | 6 cut(s) | 2070, 2967, 3192, 3408, 3567, 4177 |
| BfuAI | ACCTGC | 3 cut(s) | 1424, 2038, 4280 |
| BfuI | GTATCC | 1 cut(s) | 1297 |
| BglII | AGATCT | 1 cut(s) | 1840 |
| BlpI | GCTNAGC | 2 cut(s) | 291, 3507 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 646 |
| BmeT110I | CYCGRG | 3 cut(s) | 522, 2367, 3632 |
| BmgBI | CACGTC | 1 cut(s) | 4522 |
| BmrI | ACTGGG | 2 cut(s) | 2294, 4348 |
| BmuI | ACTGGG | 2 cut(s) | 2294, 4348 |
| BpmI | CTGGAG | 4 cut(s) | 630, 1380, 4023, 4188 |
| Bpu10I | CCTNAGC | 4 cut(s) | 911, 2130, 3733, 4578 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 291, 3507 |
| Bpu14I | TTCGAA | 1 cut(s) | 86 |
| BpuEI | CTTGAG | 2 cut(s) | 2375, 3633 |
| BpuMI | CCSGG | 2 cut(s) | 1462, 3172 |
| Bsa29I | ATCGAT | 1 cut(s) | 3707 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1932, 2406, 3756 |
| BsaHI | GRCGYC | 1 cut(s) | 3586 |
| BsaI | GGTCTC | 2 cut(s) | 633, 2890 |
| BsaWI | WCCGGW | 1 cut(s) | 3845 |
| BsaXI | ACNNNNNCTCC | 9 cut(s) | 31, 750, 780, 2266, 2296, 2494, 2524, 4126, 4156 |
| Bse118I | RCCGGY | 3 cut(s) | 420, 843, 3931 |
| Bse21I | CCTNAGG | 1 cut(s) | 4635 |
| Bse3DI | GCAATG | 3 cut(s) | 1700, 2332, 2826 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1932, 2406, 3756 |
| BseCI | ATCGAT | 1 cut(s) | 3707 |
| BseJI | GATNNNNATC | 3 cut(s) | 1932, 2406, 3756 |
| BseMI | GCAATG | 3 cut(s) | 1700, 2332, 2826 |
| BseRI | GAGGAG | 6 cut(s) | 35, 771, 1022, 1648, 2305, 4595 |
| BseSI | GKGCMC | 4 cut(s) | 1036, 2468, 3423, 3721 |
| BseX3I | CGGCCG | 1 cut(s) | 60 |
| BseYI | CCCAGC | 2 cut(s) | 1807, 2728 |
| BsgI | GTGCAG | 2 cut(s) | 566, 926 |
| Bsh1236I | CGCG | 2 cut(s) | 368, 2055 |
| Bsh1285I | CGRYCG | 1 cut(s) | 63 |
| BshNI | GGYRCC | 4 cut(s) | 1414, 1946, 3718, 4613 |
| BshVI | ATCGAT | 1 cut(s) | 3707 |
| BsiEI | CGRYCG | 1 cut(s) | 63 |
| BsiHKAI | GWGCWC | 5 cut(s) | 145, 1313, 1619, 2297, 3012 |
| BsiHKCI | CYCGRG | 3 cut(s) | 522, 2367, 3632 |
| BsiSI | CCGG | 7 cut(s) | 421, 844, 1462, 3171, 3499, 3846, 3932 |
| BslFI | GGGAC | 3 cut(s) | 38, 2063, 2455 |
| BsmAI | GTCTC | 5 cut(s) | 633, 1545, 2431, 2890, 4512 |
| BsmBI | CGTCTC | 1 cut(s) | 4512 |
| BsmFI | GGGAC | 3 cut(s) | 38, 2063, 2455 |
| BsmI | GAATGC | 5 cut(s) | 1276, 1879, 2770, 3182, 4335 |
| Bso31I | GGTCTC | 2 cut(s) | 633, 2890 |
| BsoBI | CYCGRG | 3 cut(s) | 522, 2367, 3632 |
| Bsp119I | TTCGAA | 1 cut(s) | 86 |
| Bsp120I | GGGCCC | 2 cut(s) | 2464, 3419 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 291, 3507 |
| Bsp19I | CCATGG | 1 cut(s) | 4541 |
| BspACI | CCGC | 7 cut(s) | 339, 634, 1105, 1824, 2244, 3210, 4611 |
| BspDI | ATCGAT | 1 cut(s) | 3707 |
| BspFNI | CGCG | 2 cut(s) | 368, 2055 |
| BspMAI | CTGCAG | 4 cut(s) | 2074, 2971, 3196, 3412 |
| BspMI | ACCTGC | 3 cut(s) | 1424, 2038, 4280 |
| BspPI | GGATC | 3 cut(s) | 2014, 2906, 3753 |
| BspQI | GCTCTTC | 1 cut(s) | 2043 |
| BspT104I | TTCGAA | 1 cut(s) | 86 |
| BspT107I | GGYRCC | 4 cut(s) | 1414, 1946, 3718, 4613 |
| BspTNI | GGTCTC | 2 cut(s) | 633, 2890 |
| BsrBI | CCGCTC | 1 cut(s) | 634 |
| BsrDI | GCAATG | 3 cut(s) | 1700, 2332, 2826 |
| BsrFI | RCCGGY | 3 cut(s) | 420, 843, 3931 |
| BssAI | RCCGGY | 3 cut(s) | 420, 843, 3931 |
| BssNI | GRCGYC | 1 cut(s) | 3586 |
| BssT1I | CCWWGG | 5 cut(s) | 1241, 1360, 4394, 4541, 4664 |
| Bst6I | CTCTTC | 4 cut(s) | 2043, 2355, 2434, 2577 |
| BstACI | GRCGYC | 1 cut(s) | 3586 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2672 |
| BstBI | TTCGAA | 1 cut(s) | 86 |
| BstDSI | CCRYGG | 1 cut(s) | 4541 |
| BstEII | GGTNACC | 2 cut(s) | 1245, 2025 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 4621, 4638 |
| BstFNI | CGCG | 2 cut(s) | 368, 2055 |
| BstHHI | GCGC | 2 cut(s) | 2055, 3697 |
| BstMAI | GTCTC | 5 cut(s) | 633, 1545, 2431, 2890, 4512 |
| BstMCI | CGRYCG | 1 cut(s) | 63 |
| BstNSI | RCATGY | 3 cut(s) | 46, 2159, 3113 |
| BstPI | GGTNACC | 2 cut(s) | 1245, 2025 |
| BstSFI | CTRYAG | 6 cut(s) | 2070, 2967, 3192, 3408, 3567, 4177 |
| BstSLI | GKGCMC | 4 cut(s) | 1036, 2468, 3423, 3721 |
| BstUI | CGCG | 2 cut(s) | 368, 2055 |
| BstX2I | RGATCY | 3 cut(s) | 1840, 2006, 3745 |
| BstYI | RGATCY | 3 cut(s) | 1840, 2006, 3745 |
| BstZI | CGGCCG | 1 cut(s) | 60 |
| Bsu15I | ATCGAT | 1 cut(s) | 3707 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4635 |
| BsuI | GTATCC | 1 cut(s) | 1297 |
| BsuTUI | ATCGAT | 1 cut(s) | 3707 |
| BtgI | CCRYGG | 1 cut(s) | 4541 |
| BtrI | CACGTC | 1 cut(s) | 4522 |
| BtsI | GCAGTG | 2 cut(s) | 982, 4215 |
| BveI | ACCTGC | 3 cut(s) | 1424, 2038, 4280 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2306, 3314, 4493 |
| CfoI | GCGC | 2 cut(s) | 2055, 3697 |
| Cfr10I | RCCGGY | 3 cut(s) | 420, 843, 3931 |
| ClaI | ATCGAT | 1 cut(s) | 3707 |
| CseI | GACGC | 2 cut(s) | 126, 3594 |
| CsiI | ACCWGGT | 2 cut(s) | 2119, 4366 |
| Csp6I | GTAC | 4 cut(s) | 1908, 1947, 2303, 3614 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1279, 1314 |
| CviQI | GTAC | 4 cut(s) | 1908, 1947, 2303, 3614 |
| DraI | TTTAAA | 3 cut(s) | 726, 1212, 1990 |
| DraIII | CACNNNGTG | 1 cut(s) | 1817 |
| DriI | GACNNNNNGTC | 1 cut(s) | 646 |
| EaeI | YGGCCR | 5 cut(s) | 60, 556, 841, 2241, 3500 |
| EagI | CGGCCG | 1 cut(s) | 60 |
| Eam1104I | CTCTTC | 4 cut(s) | 2043, 2355, 2434, 2577 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 646 |
| EarI | CTCTTC | 4 cut(s) | 2043, 2355, 2434, 2577 |
| Ecl136II | GAGCTC | 2 cut(s) | 1311, 1617 |
| EclXI | CGGCCG | 1 cut(s) | 60 |
| Eco130I | CCWWGG | 5 cut(s) | 1241, 1360, 4394, 4541, 4664 |
| Eco24I | GRGCYC | 5 cut(s) | 1313, 1619, 2468, 2978, 3423 |
| Eco31I | GGTCTC | 2 cut(s) | 633, 2890 |
| Eco52I | CGGCCG | 1 cut(s) | 60 |
| Eco53kI | GAGCTC | 2 cut(s) | 1311, 1617 |
| Eco81I | CCTNAGG | 1 cut(s) | 4635 |
| Eco88I | CYCGRG | 3 cut(s) | 522, 2367, 3632 |
| Eco91I | GGTNACC | 2 cut(s) | 1245, 2025 |
| EcoICRI | GAGCTC | 2 cut(s) | 1311, 1617 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 4621, 4638 |
| EcoO109I | RGGNCCY | 8 cut(s) | 2359, 2464, 2465, 3419, 3420, 4139, 4364, 4490 |
| EcoO65I | GGTNACC | 2 cut(s) | 1245, 2025 |
| EcoRI | GAATTC | 1 cut(s) | 88 |
| EcoT14I | CCWWGG | 5 cut(s) | 1241, 1360, 4394, 4541, 4664 |
| EcoT22I | ATGCAT | 4 cut(s) | 6, 1881, 2157, 2772 |
| EcoT38I | GRGCYC | 5 cut(s) | 1313, 1619, 2468, 2978, 3423 |
| ErhI | CCWWGG | 5 cut(s) | 1241, 1360, 4394, 4541, 4664 |
| Esp3I | CGTCTC | 1 cut(s) | 4512 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 249, 281, 2453, 2485 |
| FaqI | GGGAC | 3 cut(s) | 38, 2063, 2455 |
| FauI | CCCGC | 1 cut(s) | 627 |
| FauNDI | CATATG | 1 cut(s) | 4402 |
| FbaI | TGATCA | 5 cut(s) | 466, 1570, 1894, 3046, 3700 |
| FblI | GTMKAC | 3 cut(s) | 768, 2756, 4176 |
| FriOI | GRGCYC | 5 cut(s) | 1313, 1619, 2468, 2978, 3423 |
| FspI | TGCGCA | 1 cut(s) | 3696 |
| GlaI | GCGC | 2 cut(s) | 2054, 3696 |
| GsaI | CCCAGC | 2 cut(s) | 1811, 2732 |
| GsuI | CTGGAG | 4 cut(s) | 630, 1380, 4023, 4188 |
| HapII | CCGG | 7 cut(s) | 421, 844, 1462, 3171, 3499, 3846, 3932 |
| HgaI | GACGC | 2 cut(s) | 126, 3594 |
| HhaI | GCGC | 2 cut(s) | 2055, 3697 |
| Hin1I | GRCGYC | 1 cut(s) | 3586 |
| Hin6I | GCGC | 2 cut(s) | 2053, 3695 |
| HinP1I | GCGC | 2 cut(s) | 2053, 3695 |
| HincII | GTYRAC | 4 cut(s) | 48, 1960, 3766, 3834 |
| HindII | GTYRAC | 4 cut(s) | 48, 1960, 3766, 3834 |
| HindIII | AAGCTT | 2 cut(s) | 263, 1352 |
| HpaI | GTTAAC | 1 cut(s) | 1960 |
| HpaII | CCGG | 7 cut(s) | 421, 844, 1462, 3171, 3499, 3846, 3932 |
| HphI | GGTGA | 8 cut(s) | 29, 146, 980, 1413, 2019, 2337, 3088, 4521 |
| HpyCH4IV | ACGT | 3 cut(s) | 1168, 4283, 4521 |
| HpySE526I | ACGT | 3 cut(s) | 1168, 4283, 4521 |
| Hsp92I | GRCGYC | 1 cut(s) | 3586 |
| HspAI | GCGC | 2 cut(s) | 2053, 3695 |
| KpnI | GGTACC | 1 cut(s) | 1950 |
| KroI | GCCGGC | 1 cut(s) | 420 |
| KroNI | GCCGGC | 1 cut(s) | 422 |
| Ksp22I | TGATCA | 5 cut(s) | 466, 1570, 1894, 3046, 3700 |
| KspAI | GTTAAC | 1 cut(s) | 1960 |
| LguI | GCTCTTC | 1 cut(s) | 2043 |
| LmnI | GCTCC | 9 cut(s) | 611, 631, 945, 1614, 2292, 2515, 3292, 3957, 4582 |
| MabI | ACCWGGT | 2 cut(s) | 2119, 4366 |
| MaeII | ACGT | 3 cut(s) | 1168, 4283, 4521 |
| MbiI | CCGCTC | 1 cut(s) | 634 |
| MfeI | CAATTG | 2 cut(s) | 2493, 4107 |
| MflI | RGATCY | 3 cut(s) | 1840, 2006, 3745 |
| MlyI | GAGTC | 7 cut(s) | 43, 764, 1976, 2346, 2515, 2613, 2786 |
| MmeI | TCCRAC | 5 cut(s) | 2185, 2297, 2715, 3449, 4410 |
| Mph1103I | ATGCAT | 4 cut(s) | 6, 1881, 2157, 2772 |
| MroNI | GCCGGC | 1 cut(s) | 420 |
| MslI | CAYNNNNRTG | 5 cut(s) | 324, 1281, 2765, 3003, 3316 |
| MspA1I | CMGCKG | 5 cut(s) | 2246, 3212, 3506, 3572, 4058 |
| MspI | CCGG | 7 cut(s) | 421, 844, 1462, 3171, 3499, 3846, 3932 |
| MunI | CAATTG | 2 cut(s) | 2493, 4107 |
| Mva1269I | GAATGC | 5 cut(s) | 1276, 1879, 2770, 3182, 4335 |
| MvnI | CGCG | 2 cut(s) | 368, 2055 |
| NaeI | GCCGGC | 1 cut(s) | 422 |
| NciI | CCSGG | 2 cut(s) | 1462, 3172 |
| NcoI | CCATGG | 1 cut(s) | 4541 |
| NdeI | CATATG | 1 cut(s) | 4402 |
| NgoMIV | GCCGGC | 1 cut(s) | 420 |
| NmuCI | GTSAC | 8 cut(s) | 701, 992, 1419, 1480, 2025, 2518, 4060, 4522 |
| NsbI | TGCGCA | 1 cut(s) | 3696 |
| NsiI | ATGCAT | 4 cut(s) | 6, 1881, 2157, 2772 |
| NspI | RCATGY | 3 cut(s) | 46, 2159, 3113 |
| NspV | TTCGAA | 1 cut(s) | 86 |
| OliI | CACNNNNGTG | 1 cut(s) | 3003 |
| PaeI | GCATGC | 1 cut(s) | 2159 |
| PaeR7I | CTCGAG | 3 cut(s) | 522, 2367, 3632 |
| PaqCI | CACCTGC | 2 cut(s) | 2038, 4280 |
| PciI | ACATGT | 2 cut(s) | 42, 3109 |
| PciSI | GCTCTTC | 1 cut(s) | 2043 |
| PctI | GAATGC | 5 cut(s) | 1276, 1879, 2770, 3182, 4335 |
| PdiI | GCCGGC | 1 cut(s) | 422 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 4088 |
| PfoI | TCCNGGA | 1 cut(s) | 1460 |
| PleI | GAGTC | 7 cut(s) | 42, 764, 1975, 2345, 2515, 2612, 2785 |
| PpsI | GAGTC | 7 cut(s) | 42, 764, 1975, 2345, 2515, 2612, 2785 |
| PpuMI | RGGWCCY | 3 cut(s) | 2359, 4139, 4364 |
| PscI | ACATGT | 2 cut(s) | 42, 3109 |
| PshBI | ATTAAT | 2 cut(s) | 480, 1775 |
| Psp124BI | GAGCTC | 2 cut(s) | 1313, 1619 |
| Psp5II | RGGWCCY | 3 cut(s) | 2359, 4139, 4364 |
| PspEI | GGTNACC | 2 cut(s) | 1245, 2025 |
| PspFI | CCCAGC | 2 cut(s) | 1807, 2728 |
| PspOMI | GGGCCC | 2 cut(s) | 2464, 3419 |
| PspPPI | RGGWCCY | 3 cut(s) | 2359, 4139, 4364 |
| PspXI | VCTCGAGB | 1 cut(s) | 522 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4398, 4430 |
| PstI | CTGCAG | 4 cut(s) | 2074, 2971, 3196, 3412 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2306, 3314, 4493 |
| PsuI | RGATCY | 3 cut(s) | 1840, 2006, 3745 |
| PvuII | CAGCTG | 3 cut(s) | 3506, 3572, 4058 |
| RsaI | GTAC | 4 cut(s) | 1909, 1948, 2304, 3615 |
| RsaNI | GTAC | 4 cut(s) | 1908, 1947, 2303, 3614 |
| RseI | CAYNNNNRTG | 5 cut(s) | 324, 1281, 2765, 3003, 3316 |
| SacI | GAGCTC | 2 cut(s) | 1313, 1619 |
| SapI | GCTCTTC | 1 cut(s) | 2043 |
| SchI | GAGTC | 7 cut(s) | 43, 764, 1976, 2346, 2515, 2613, 2786 |
| SexAI | ACCWGGT | 2 cut(s) | 2119, 4366 |
| SfcI | CTRYAG | 6 cut(s) | 2070, 2967, 3192, 3408, 3567, 4177 |
| Sfr274I | CTCGAG | 3 cut(s) | 522, 2367, 3632 |
| SfuI | TTCGAA | 1 cut(s) | 86 |
| SlaI | CTCGAG | 3 cut(s) | 522, 2367, 3632 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 324, 1281, 2765, 3003, 3316 |
| SmlI | CTYRAG | 5 cut(s) | 522, 2354, 2367, 3632, 3648 |
| SmoI | CTYRAG | 5 cut(s) | 522, 2354, 2367, 3632, 3648 |
| SphI | GCATGC | 1 cut(s) | 2159 |
| SsiI | CCGC | 7 cut(s) | 339, 634, 1105, 1824, 2244, 3210, 4611 |
| SspI | AATATT | 2 cut(s) | 1372, 3805 |
| SstI | GAGCTC | 2 cut(s) | 1313, 1619 |
| StyI | CCWWGG | 5 cut(s) | 1241, 1360, 4394, 4541, 4664 |
| TaiI | ACGT | 3 cut(s) | 1171, 4286, 4524 |
| TauI | GCSGC | 3 cut(s) | 341, 2246, 4614 |
| TseFI | GTSAC | 8 cut(s) | 701, 992, 1419, 1480, 2025, 2518, 4060, 4522 |
| Tsp45I | GTSAC | 8 cut(s) | 701, 992, 1419, 1480, 2025, 2518, 4060, 4522 |
| TspGWI | ACGGA | 4 cut(s) | 46, 129, 1081, 4337 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 4088 |
| VspI | ATTAAT | 2 cut(s) | 480, 1775 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 4621, 4638 |
| XapI | RAATTY | 5 cut(s) | 88, 303, 881, 3021, 3284 |
| XbaI | TCTAGA | 1 cut(s) | 2617 |
| XceI | RCATGY | 3 cut(s) | 46, 2159, 3113 |
| XhoI | CTCGAG | 3 cut(s) | 522, 2367, 3632 |
| XmiI | GTMKAC | 3 cut(s) | 768, 2756, 4176 |
| Zsp2I | ATGCAT | 4 cut(s) | 6, 1881, 2157, 2772 |