Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006123

Physical Location & Seq

Genomic Coordinates Reverse (-)

1619314 .. 1628553

Gene Structure 9240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG024900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4227 bp

ATGCAGGCAACAGTGCAGTCAGGTGGCCGATCTCCAAAACCAATGAACGGTCCATCTTCAGCATCACAGTTAAAAGCTGGATCAGATGGTGTCCAGAATAGTGCCTCATCCTTTTCTTCTCAAGTTAAGGGGAAAAAAAGGGAGCGGGGAGACCAGGGGTCTGAGCCTGTCAAACGAGAACGCATTACAAGAATAGATGATGGGGATTCTGGTCACTGTAAACAGGAAAGCACTTTAAAGTCAGAAATTGCAAAAATAACTGAAAGAGGAGGGCTTGTAGACTCTGAAGGGGTTGAAAAATTGGTTCAGCTCATGGGGCCTGATAGAAATGAGAAAAAAATAGATGTGGCTGGCCGGTCTATGCTTGCTAGTGTTTTAGCAGCCACAGATAAATTTGATTGCCTTAGTCGATTTGTGCAGCTCAGGGGTTTGCCTGTATTCGATGAGTGGCTCCAAGAGGTCCACAAAGGGAAGATAGGTGATGGCAGTGCATCCAAAGATAGTGACAAATGTGTTGAGGAGTTTCTCTTGGTTTTACTTCGTGCCCTGGATAAGCTGCCAGTAAATCTTAATGCTCTACAAATGTGTAACATTGGAAAGTCCGTCAATCACTTGCGGACACATAAGAACTTGGAAATCCAGAAGAAAGCAAGAAGTTTAGTTGATACATGGAAGAAACGTGTTGAAGCTGAAATGAAGATCAATGAGGCAAAGTCTGGTTTAAATCAGGCTGGCCCCTGGTCTGCTAGACCAAGGTTACCTGAAGTTTCACATGGTGGAAACAGGCATTCAGGTGTATCCACTGATGTTGCTGTCAAGAGCTCAGTTACACAGCTTTCTGTATCAAACAAATCTTCAGTTAAGCTTGTCCAAGGAGATAATATTACCAAATCTGCTTCTGCATCTCCAGTTTCTTTGAAATCGGTGCCGTCACCTGTTTCAGCAGGTTCTAACTTAAAAGATGGACAATCCCGGATTGCTCCTGTTGGTGTCACAGTTGATCTTCCTATGACAACTACAAGGGATGAGAAAAGCAGCAGTTCTAGTCAGTCTCACAACAATAGCCAGTCATGTTCAAATGATCATGCTAGAAATGGAGGCGTTTCTGGTAAAGAGGATGCAAGGAGCTCGACTGCTGGTTCTATGAATAAGACATCAGGTGGTTCTTCACGGCCTAGGAAATCAATAAATGGCTTCCCAGGTTCTACTCCCTCTGGAGCTCAAAAAGAAACCGTATCGAGCAGAAGTTCATCATTGCACAAGAATCCAGCTTCAGAAAAATCATTACAGGCTGGAATAAGTGAGAAGGTAGTTGATGATAACAAATTAATTGTCAAGATTCCGAATCGAGGTCGCAGTCCGGCACAAAGTGGAAGCGGAGGTTCTTTTGAAGATCTTTCGAATATGAACAGCAGAGCTTCTTCTCCTATGCATTCTGAAAAGCATGATCAACTTGATTGTACCTTAAAGGAAAAGGTTGATGTTTATCGAGCCACTGGTACCTCAGATGTTAACACAGAGTCCTGGCAAAGCAACGATTTTAAAGACATATTGACTGGATCTGATGAGGGGGATGGGTCACCTGCTGCTGTTACTAATGAAGAGCGCGACCCTAAGAAAACTGCAGAAGTCCCAAAAGCTGCTTCCTCATCATCAGGGAATGAACAGAAACCAGGTAACGCTCAGGAGGCTTCTTTCAGCTCTATGCATGCCTTGGTTGAAAGCTGTGTGAAGTATTCTGAAGGTAATGCTTCTGTTGGAGATGATCTTGGTATGAATCTGCTTGCTAGTGTGGCCGCTGATGAGATGTCTAAATCAGAATCTCCAACTGATTCTCCACAGAGGAGCACCCCAGTATCTGAGCATCTTTGCAAAGGCAATGATTCCAGAGTCAAATCACCTCTTCTTGAGGACCTTGCTCGAGATGAAAGCCAGTCTAATGTCGGTGCTGATGATGAATATCAGAAGCATGGTATTGTCTCTGCTACTTTTGGGACTAAGGATGGGGGTGGTAAAGGCCCCTTCCCAGAGAACAAAGAAAAACCAATTGAAGTTACTTTAGCTCCTGCTGTGACTCCCTGCCCTGCTATTGCAGTTGAGGAAACTATGGATAGTGAAGGAACCAAACCACCTGCAGAGAAAAAGGTGGTGGGTGGAGTCGATGAGACTCTAGATATTAAACAAGGTCTAACTGGTCATTTGTCAAATGAAACTAAGGCTAATGATGCAATTTCAAGGGCAGTAGATGGGAAAGAAGCCACTGAAGAATCATCTTTGCACCCAGCGTTGGAAGTTGATGGTAAACTGTCTACCATACAGATGCATTCTGAGTCAGTAAAAGGAACAAGTGAAGGTGTGATGCTTTCTTCAGAAAAAGTCTCTGCACCAAAGGCTGATAATACAGATGAAATGGAGGATAGGAGTTGCTCTAATCAGACAGAAAGACACAGACCAGAAAGTAATGATCCTATCTTGCCTAAAAAAGAAAGTGATAATTCTTTAATTCCTGAGAATCGAGCTGCAAGGGGCTCTAGTTCTGCTGTTACTGACCACAACAGTGAGCACATGGAGGAAATTTTGGAAAGTAAAGTGGCTAATGATCAACTTAGCGAATCAGTTGTTTTGAAGGTGAAACCTGATCGTCCAATGCAAGAAGTAGAACATGTGAGGTCCAAGAAGTCTAAAGTTACTGGCATGGATGCAAAAGTGGAAGTCGAAGAAGCCGGGGAATGCACATCTACAACTGCAGATACTCCTATGTCCGCTGTGGGAGTATCAGACATGGATGCAAAAGTGGAGTTTGATTTGAATGAAGGCTTTAATGCAGATGATGGGAAATTTGGGGAGCCAAATAACTTGACAGCACCTGGATGTTCAACTGCTCTACGGTTGATTAGCCCTTTACCATTTTCTGTTTCTTCTTTGTCTAGTGGCCTTCCTGCTTCAGTTACAGTGCCTTCTGCAGCGAAAGGGCCCTGTGTTCCACCAGATGACTTGTTGAAGGGTAAACAGGAGGATGGTTGGAAAGGAACAGCAGCAACAAGTGCCTTCCGGCCAGCTGAGCCTAGAAAAGTATCAGAGTTGCCATTAGGTGCAACAAATATTGCAATTCCTGACCCTACAGCTGGCAAGCAAGGACGCCCTGCTTTGGATATTGACTTGAATGTACCGGACGAGAGAGTTCTCGAGGATATGGCTTCTCAAGAGATATTTTCTCTTTTTGCCCCGACAAGTAATAATGATTTTTCGCGTGATCAATCGATGAGTATGGCACCTGTTCGCAGCTCAGGAGGTCTGGATCTTGATTTGAATCAAGTTGACGAGGCTTCCGAAATTGGTAGTTACTCATTGAGCAATATTCGCCGAATGAATAATCCAATTCTGTCAACAAAAGCATCAGGTGGACCTCCAAATGGAGAAGTCAGTCATCGTAGGGATTTTGATTTGAATAATGGACCAGCCTTTGACGATGTAAGTGCTGAACCGGCAGTGTTTAGTCAGCATACCAGGAGCAGTATGCCATCTCAACCTCCTAATTCTGGTTTTAGGATGAGCAATACAGAAGTGGGAAACTTCTCATCTTGGTTTTCTGCAGCCAATACCTACTCAGCTGTCACAATTCCTTCGATTATGCCAGATCGTGGAGAGCAGCCATTCCCAATTGTTGCAACTGGTGGACCACAAAGGACGGGTCCTCCTACCGGTAGCAACCCCTTTACTCCTGATGTCTACAGGGGTTCAGTGGTGTCATCTTCTCCAGCAGTGCCTTATCCTTCTACTTCATTTCAATATCCAGTTTTTCCTTTTGGAAGCAGTTTTCCTCTGCCTTCAGCCACGTTTGCAGGTGGTTCAACAACATATCTGGATTCATCTGCTGGAAGGCTTTGCATTCCTGCTGTCCGTTCCCAGTTGTTAGGACCTGGTAGTATGATTCCTTCCAACTACCCAAGGCCATATGTAGTTAATGTTCCAGATGGTAGCAATAACAGTAGTGCTGAGAACAGTAGGAAATGGGGAAGGCAGGGGCTAGACCTCAATGCAGGGCCTGGTGGCCCAGACTTAGAGGGGAGAGACATGACTTCACCTCTTGCACCATGGCAATTCTCTGTTGCCAGTTCACAGGCATTAGCTGAGGAGCAAGCAAGAATGTTCCAGATGTCAGGGGGCACCTTTAAGAGGAAGGAACCTGAGGGAGGATGGGATGGCTACAAACAACCTTGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

BAH Med26

Protein Analysis

1408

Amino Acids

149.47

Weight (kDa)

5.47

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med26	PF08711	179 - 228	1.4e-13	TFIIS helical bundle-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48050 AT3G48050 AT3G48060 AT3G48060 AT3G48060
fragaria_vesca	FvH4_5g16640 FvH4_5g16640 FvH4_5g16640 FvH4_5g16640
malus_domestica	MD06G1178400.v1.1 MD14G1184800.v1.1
prunus_persica	Prupe.5G177500_v2.0.a1 Prupe.5G177500_v2.0.a1
pyrus_communis	pycom06g15860 pycom14g15380
rosa_chinensis	RchiOBHm_Chr7g0179511
rosa_laevigata	RLG00000005348
rosa_multiflora	Rmu_sc0000735.1_g000008
rosa_roxburghii	Rroxscaffold_3G00273930
rosa_rugosa	Rorug06G0424900 Rorug06G0424900 Rorug06G0425000.1
rosa_samantha	Rh7AG024900 Rh7BG024100 Rh7CG025500 Rh7DG025300
rosa_wichuraiana	Rw7G002000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	1591, 2140, 3833
Acc36I	ACCTGC	4 cut(s)	935, 1591, 2140, 3833
Acc65I	GGTACC	1 cut(s)	1499
AccB1I	GGYRCC	4 cut(s)	925, 1499, 3271, 4166
AccB7I	CCANNNNNTGG	1 cut(s)	3641
AccBSI	CCGCTC	1 cut(s)	145
AccI	GTMKAC	3 cut(s)	279, 2309, 3729
AccII	CGCG	2 cut(s)	1608, 3250
AciI	CCGC	5 cut(s)	145, 616, 1377, 1797, 2763
AclWI	GGATC	4 cut(s)	88, 1567, 2459, 3306
AcoI	YGGCCR	4 cut(s)	25, 352, 1794, 3053
AcsI	RAATTY	3 cut(s)	392, 2574, 2837
AcyI	GRCGYC	1 cut(s)	3139
AdeI	CACNNNGTG	2 cut(s)	776, 1370
AfaI	GTAC	3 cut(s)	1462, 1501, 3168
AflIII	ACRYGT	2 cut(s)	679, 2662
AgeI	ACCGGT	1 cut(s)	3701
AhdI	GACNNNNNGTC	1 cut(s)	157
AjuI	GAANNNNNNNTTGG	2 cut(s)	1627, 1659
AleI	CACNNNNGTG	1 cut(s)	2556
Alw21I	GWGCWC	5 cut(s)	824, 1130, 1222, 1850, 2565
Alw26I	GTCTC	6 cut(s)	144, 1056, 1984, 2159, 2383, 4065
AlwI	GGATC	4 cut(s)	88, 1567, 2459, 3306
AlwNI	CAGNNNCTG	3 cut(s)	1859, 2867, 4046
Ama87I	CYCGRG	2 cut(s)	1920, 3185
ApaI	GGGCCC	1 cut(s)	2976
ApoI	RAATTY	3 cut(s)	392, 2574, 2837
ArsI	GACNNNNNNTTYG	4 cut(s)	1317, 1349, 3676, 3708
AseI	ATTAAT	1 cut(s)	1328
AsiGI	ACCGGT	1 cut(s)	3701
Asp718I	GGTACC	1 cut(s)	1499
AspA2I	CCTAGG	1 cut(s)	1175
AspLEI	GCGC	1 cut(s)	1608
AsuC2I	CCSGG	2 cut(s)	973, 2725
AsuHPI	GGTGA	6 cut(s)	491, 924, 1572, 1890, 2641, 4074
AsuII	TTCGAA	1 cut(s)	1400
AvaI	CYCGRG	2 cut(s)	1920, 3185
AvaII	GGWCC	9 cut(s)	50, 460, 1912, 2670, 3404, 3455, 3677, 3692, 3917
AvrII	CCTAGG	1 cut(s)	1175
AxyI	CCTNAGG	1 cut(s)	4188
BaeGI	GKGCMC	3 cut(s)	547, 2976, 4169
BaeI	ACNNNNGTAYC	2 cut(s)	1839, 1872
BanI	GGYRCC	4 cut(s)	925, 1499, 3271, 4166
BanII	GRGCYC	5 cut(s)	824, 1130, 1222, 2531, 2976
BarI	GAAGNNNNNNTAC	2 cut(s)	3919, 3951
Bbv12I	GWGCWC	5 cut(s)	824, 1130, 1222, 1850, 2565
BbvCI	CCTCAGC	1 cut(s)	4131
BceAI	ACGGC	2 cut(s)	913, 1187
BcgI	CGANNNNNNTGC	4 cut(s)	1110, 1144, 3458, 3492
BciVI	GTATCC	1 cut(s)	808
BclI	TGATCA	4 cut(s)	1081, 1447, 2599, 3253
BcnI	CCSGG	2 cut(s)	973, 2725
BcoDI	GTCTC	6 cut(s)	144, 1056, 1984, 2159, 2383, 4065
BfmI	CTRYAG	7 cut(s)	1623, 2133, 2745, 2961, 3120, 3591, 3730
BfuAI	ACCTGC	4 cut(s)	935, 1591, 2140, 3833
BfuI	GTATCC	1 cut(s)	808
BglII	AGATCT	1 cut(s)	1393
BlnI	CCTAGG	1 cut(s)	1175
BlpI	GCTNAGC	1 cut(s)	3060
Bme18I	GGWCC	9 cut(s)	50, 460, 1912, 2670, 3404, 3455, 3677, 3692, 3917
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmeT110I	CYCGRG	2 cut(s)	1920, 3185
BmrI	ACTGGG	2 cut(s)	1847, 3901
BmuI	ACTGGG	2 cut(s)	1847, 3901
BpmI	CTGGAG	3 cut(s)	891, 1236, 3741
Bpu10I	CCTNAGC	4 cut(s)	422, 1683, 3286, 4131
Bpu1102I	GCTNAGC	1 cut(s)	3060
Bpu14I	TTCGAA	1 cut(s)	1400
BpuEI	CTTGAG	3 cut(s)	105, 1928, 3186
BpuMI	CCSGG	2 cut(s)	973, 2725
Bsa29I	ATCGAT	1 cut(s)	3260
BsaBI	GATNNNNATC	3 cut(s)	1485, 1959, 3309
BsaHI	GRCGYC	1 cut(s)	3139
BsaI	GGTCTC	1 cut(s)	144
BsaWI	WCCGGW	2 cut(s)	3169, 3701
BsaXI	ACNNNNNCTCC	8 cut(s)	261, 291, 1819, 1849, 2047, 2077, 3679, 3709
Bse118I	RCCGGY	3 cut(s)	354, 3484, 3701
Bse21I	CCTNAGG	1 cut(s)	4188
Bse3DI	GCAATG	2 cut(s)	1253, 1885
Bse8I	GATNNNNATC	3 cut(s)	1485, 1959, 3309
BseCI	ATCGAT	1 cut(s)	3260
BseJI	GATNNNNATC	3 cut(s)	1485, 1959, 3309
BseMI	GCAATG	2 cut(s)	1253, 1885
BseRI	GAGGAG	4 cut(s)	282, 533, 1858, 4148
BseSI	GKGCMC	3 cut(s)	547, 2976, 4169
BseYI	CCCAGC	1 cut(s)	2281
BsgI	GTGCAG	3 cut(s)	35, 437, 2367
Bsh1236I	CGCG	2 cut(s)	1608, 3250
BshNI	GGYRCC	4 cut(s)	925, 1499, 3271, 4166
BshTI	ACCGGT	1 cut(s)	3701
BshVI	ATCGAT	1 cut(s)	3260
BsiHKAI	GWGCWC	5 cut(s)	824, 1130, 1222, 1850, 2565
BsiHKCI	CYCGRG	2 cut(s)	1920, 3185
BsiSI	CCGG	8 cut(s)	355, 973, 1361, 2724, 3052, 3170, 3485, 3702
BslFI	GGGAC	2 cut(s)	1616, 2008
BsmAI	GTCTC	6 cut(s)	144, 1056, 1984, 2159, 2383, 4065
BsmFI	GGGAC	2 cut(s)	1616, 2008
BsmI	GAATGC	5 cut(s)	787, 1432, 2323, 2735, 3888
Bso31I	GGTCTC	1 cut(s)	144
BsoBI	CYCGRG	2 cut(s)	1920, 3185
Bsp119I	TTCGAA	1 cut(s)	1400
Bsp120I	GGGCCC	1 cut(s)	2972
Bsp1286I	GDGCHC	9 cut(s)	547, 824, 1130, 1222, 1850, 2531, 2565, 2976, 4169
Bsp1720I	GCTNAGC	1 cut(s)	3060
Bsp19I	CCATGG	1 cut(s)	4094
BspACI	CCGC	5 cut(s)	145, 616, 1377, 1797, 2763
BspDI	ATCGAT	1 cut(s)	3260
BspFNI	CGCG	2 cut(s)	1608, 3250
BspMAI	CTGCAG	5 cut(s)	1627, 2137, 2749, 2965, 3595
BspMI	ACCTGC	4 cut(s)	935, 1591, 2140, 3833
BspPI	GGATC	4 cut(s)	88, 1567, 2459, 3306
BspQI	GCTCTTC	1 cut(s)	1596
BspT104I	TTCGAA	1 cut(s)	1400
BspT107I	GGYRCC	4 cut(s)	925, 1499, 3271, 4166
BspTNI	GGTCTC	1 cut(s)	144
BsrBI	CCGCTC	1 cut(s)	145
BsrDI	GCAATG	2 cut(s)	1253, 1885
BsrFI	RCCGGY	3 cut(s)	354, 3484, 3701
BssAI	RCCGGY	3 cut(s)	354, 3484, 3701
BssNI	GRCGYC	1 cut(s)	3139
BssT1I	CCWWGG	7 cut(s)	752, 871, 1175, 1713, 3947, 4094, 4217
Bst6I	CTCTTC	2 cut(s)	1596, 1908
BstACI	GRCGYC	1 cut(s)	3139
BstAPI	GCANNNNNTGC	1 cut(s)	3044
BstBI	TTCGAA	1 cut(s)	1400
BstDSI	CCRYGG	1 cut(s)	4094
BstEII	GGTNACC	2 cut(s)	756, 1578
BstENI	CCTNNNNNAGG	2 cut(s)	4174, 4191
BstFNI	CGCG	2 cut(s)	1608, 3250
BstHHI	GCGC	1 cut(s)	1608
BstMAI	GTCTC	6 cut(s)	144, 1056, 1984, 2159, 2383, 4065
BstNSI	RCATGY	2 cut(s)	1712, 2666
BstPI	GGTNACC	2 cut(s)	756, 1578
BstSFI	CTRYAG	7 cut(s)	1623, 2133, 2745, 2961, 3120, 3591, 3730
BstSLI	GKGCMC	3 cut(s)	547, 2976, 4169
BstUI	CGCG	2 cut(s)	1608, 3250
BstX2I	RGATCY	3 cut(s)	1393, 1559, 3298
BstYI	RGATCY	3 cut(s)	1393, 1559, 3298
Bsu15I	ATCGAT	1 cut(s)	3260
Bsu36I	CCTNAGG	1 cut(s)	4188
BsuI	GTATCC	1 cut(s)	808
BsuTUI	ATCGAT	1 cut(s)	3260
BtgI	CCRYGG	1 cut(s)	4094
BtsI	GCAGTG	3 cut(s)	493, 3495, 3768
BveI	ACCTGC	4 cut(s)	935, 1591, 2140, 3833
CaiI	CAGNNNCTG	3 cut(s)	1859, 2867, 4046
CfoI	GCGC	1 cut(s)	1608
Cfr10I	RCCGGY	3 cut(s)	354, 3484, 3701
ClaI	ATCGAT	1 cut(s)	3260
CseI	GACGC	1 cut(s)	3147
CsiI	ACCWGGT	2 cut(s)	1672, 3919
Csp6I	GTAC	3 cut(s)	1461, 1500, 3167
CspAI	ACCGGT	1 cut(s)	3701
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
CviQI	GTAC	3 cut(s)	1461, 1500, 3167
DraI	TTTAAA	3 cut(s)	237, 723, 1543
DraIII	CACNNNGTG	2 cut(s)	776, 1370
DriI	GACNNNNNGTC	1 cut(s)	157
EaeI	YGGCCR	4 cut(s)	25, 352, 1794, 3053
Eam1104I	CTCTTC	2 cut(s)	1596, 1908
Eam1105I	GACNNNNNGTC	1 cut(s)	157
EarI	CTCTTC	2 cut(s)	1596, 1908
Ecl136II	GAGCTC	3 cut(s)	822, 1128, 1220
Eco130I	CCWWGG	7 cut(s)	752, 871, 1175, 1713, 3947, 4094, 4217
Eco24I	GRGCYC	5 cut(s)	824, 1130, 1222, 2531, 2976
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	9 cut(s)	50, 460, 1912, 2670, 3404, 3455, 3677, 3692, 3917
Eco53kI	GAGCTC	3 cut(s)	822, 1128, 1220
Eco81I	CCTNAGG	1 cut(s)	4188
Eco88I	CYCGRG	2 cut(s)	1920, 3185
Eco91I	GGTNACC	2 cut(s)	756, 1578
EcoICRI	GAGCTC	3 cut(s)	822, 1128, 1220
EcoNI	CCTNNNNNAGG	2 cut(s)	4174, 4191
EcoO109I	RGGNCCY	8 cut(s)	317, 1912, 2018, 2972, 2973, 3692, 3917, 4043
EcoO65I	GGTNACC	2 cut(s)	756, 1578
EcoT14I	CCWWGG	7 cut(s)	752, 871, 1175, 1713, 3947, 4094, 4217
EcoT22I	ATGCAT	3 cut(s)	1434, 1710, 2325
EcoT38I	GRGCYC	5 cut(s)	824, 1130, 1222, 2531, 2976
ErhI	CCWWGG	7 cut(s)	752, 871, 1175, 1713, 3947, 4094, 4217
FaqI	GGGAC	2 cut(s)	1616, 2008
FauI	CCCGC	1 cut(s)	138
FauNDI	CATATG	1 cut(s)	3955
FbaI	TGATCA	4 cut(s)	1081, 1447, 2599, 3253
FblI	GTMKAC	3 cut(s)	279, 2309, 3729
FriOI	GRGCYC	5 cut(s)	824, 1130, 1222, 2531, 2976
GlaI	GCGC	1 cut(s)	1607
GsaI	CCCAGC	1 cut(s)	2285
GsuI	CTGGAG	3 cut(s)	891, 1236, 3741
HapII	CCGG	8 cut(s)	355, 973, 1361, 2724, 3052, 3170, 3485, 3702
HgaI	GACGC	1 cut(s)	3147
HhaI	GCGC	1 cut(s)	1608
Hin1I	GRCGYC	1 cut(s)	3139
Hin6I	GCGC	1 cut(s)	1606
HinP1I	GCGC	1 cut(s)	1606
HincII	GTYRAC	3 cut(s)	1513, 3319, 3387
HindII	GTYRAC	3 cut(s)	1513, 3319, 3387
HindIII	AAGCTT	1 cut(s)	863
HpaI	GTTAAC	1 cut(s)	1513
HpaII	CCGG	8 cut(s)	355, 973, 1361, 2724, 3052, 3170, 3485, 3702
HphI	GGTGA	6 cut(s)	491, 924, 1572, 1890, 2641, 4074
HpyCH4IV	ACGT	2 cut(s)	679, 3836
HpySE526I	ACGT	2 cut(s)	679, 3836
Hsp92I	GRCGYC	1 cut(s)	3139
HspAI	GCGC	1 cut(s)	1606
KpnI	GGTACC	1 cut(s)	1503
Ksp22I	TGATCA	4 cut(s)	1081, 1447, 2599, 3253
KspAI	GTTAAC	1 cut(s)	1513
LguI	GCTCTTC	1 cut(s)	1596
MabI	ACCWGGT	2 cut(s)	1672, 3919
MaeII	ACGT	2 cut(s)	679, 3836
MbiI	CCGCTC	1 cut(s)	145
MfeI	CAATTG	2 cut(s)	2046, 3660
MflI	RGATCY	3 cut(s)	1393, 1559, 3298
MhlI	GDGCHC	9 cut(s)	547, 824, 1130, 1222, 1850, 2531, 2565, 2976, 4169
MlyI	GAGTC	7 cut(s)	275, 1529, 1899, 2068, 2161, 2166, 2339
MmeI	TCCRAC	5 cut(s)	1738, 1850, 2268, 3002, 3963
Mph1103I	ATGCAT	3 cut(s)	1434, 1710, 2325
MslI	CAYNNNNRTG	4 cut(s)	792, 2318, 2556, 2869
MspA1I	CMGCKG	5 cut(s)	1799, 2765, 3059, 3125, 3611
MspI	CCGG	8 cut(s)	355, 973, 1361, 2724, 3052, 3170, 3485, 3702
MunI	CAATTG	2 cut(s)	2046, 3660
Mva1269I	GAATGC	5 cut(s)	787, 1432, 2323, 2735, 3888
MvnI	CGCG	2 cut(s)	1608, 3250
NciI	CCSGG	2 cut(s)	973, 2725
NcoI	CCATGG	1 cut(s)	4094
NdeI	CATATG	1 cut(s)	3955
NmuCI	GTSAC	7 cut(s)	212, 503, 930, 991, 1578, 2071, 3613
NsiI	ATGCAT	3 cut(s)	1434, 1710, 2325
NspI	RCATGY	2 cut(s)	1712, 2666
NspV	TTCGAA	1 cut(s)	1400
OliI	CACNNNNGTG	1 cut(s)	2556
PaeI	GCATGC	1 cut(s)	1712
PaeR7I	CTCGAG	2 cut(s)	1920, 3185
PaqCI	CACCTGC	3 cut(s)	1591, 2140, 3833
PciI	ACATGT	1 cut(s)	2662
PciSI	GCTCTTC	1 cut(s)	1596
PcsI	WCGNNNNNNNCGW	1 cut(s)	3327
PctI	GAATGC	5 cut(s)	787, 1432, 2323, 2735, 3888
PflMI	CCANNNNNTGG	1 cut(s)	3641
PfoI	TCCNGGA	1 cut(s)	971
PinAI	ACCGGT	1 cut(s)	3701
PleI	GAGTC	7 cut(s)	275, 1528, 1898, 2068, 2161, 2165, 2338
PpsI	GAGTC	7 cut(s)	275, 1528, 1898, 2068, 2161, 2165, 2338
PpuMI	RGGWCCY	3 cut(s)	1912, 3692, 3917
PscI	ACATGT	1 cut(s)	2662
PshBI	ATTAAT	1 cut(s)	1328
Psp124BI	GAGCTC	3 cut(s)	824, 1130, 1222
Psp5II	RGGWCCY	3 cut(s)	1912, 3692, 3917
PspEI	GGTNACC	2 cut(s)	756, 1578
PspFI	CCCAGC	1 cut(s)	2281
PspOMI	GGGCCC	1 cut(s)	2972
PspPPI	RGGWCCY	3 cut(s)	1912, 3692, 3917
PsrI	GAACNNNNNNTAC	2 cut(s)	3951, 3983
PstI	CTGCAG	5 cut(s)	1627, 2137, 2749, 2965, 3595
PstNI	CAGNNNCTG	3 cut(s)	1859, 2867, 4046
PsuI	RGATCY	3 cut(s)	1393, 1559, 3298
PvuII	CAGCTG	3 cut(s)	3059, 3125, 3611
RsaI	GTAC	3 cut(s)	1462, 1501, 3168
RsaNI	GTAC	3 cut(s)	1461, 1500, 3167
RseI	CAYNNNNRTG	4 cut(s)	792, 2318, 2556, 2869
SacI	GAGCTC	3 cut(s)	824, 1130, 1222
SapI	GCTCTTC	1 cut(s)	1596
SchI	GAGTC	7 cut(s)	275, 1529, 1899, 2068, 2161, 2166, 2339
SduI	GDGCHC	9 cut(s)	547, 824, 1130, 1222, 1850, 2531, 2565, 2976, 4169
SexAI	ACCWGGT	2 cut(s)	1672, 3919
SfcI	CTRYAG	7 cut(s)	1623, 2133, 2745, 2961, 3120, 3591, 3730
Sfr274I	CTCGAG	2 cut(s)	1920, 3185
SfuI	TTCGAA	1 cut(s)	1400
SinI	GGWCC	9 cut(s)	50, 460, 1912, 2670, 3404, 3455, 3677, 3692, 3917
SlaI	CTCGAG	2 cut(s)	1920, 3185
SmiMI	CAYNNNNRTG	4 cut(s)	792, 2318, 2556, 2869
SmlI	CTYRAG	5 cut(s)	120, 1907, 1920, 3185, 3201
SmoI	CTYRAG	5 cut(s)	120, 1907, 1920, 3185, 3201
SphI	GCATGC	1 cut(s)	1712
SsiI	CCGC	5 cut(s)	145, 616, 1377, 1797, 2763
SspI	AATATT	3 cut(s)	883, 3103, 3358
SstI	GAGCTC	3 cut(s)	824, 1130, 1222
StyI	CCWWGG	7 cut(s)	752, 871, 1175, 1713, 3947, 4094, 4217
TaiI	ACGT	2 cut(s)	682, 3839
TauI	GCSGC	1 cut(s)	1799
TseFI	GTSAC	7 cut(s)	212, 503, 930, 991, 1578, 2071, 3613
Tsp45I	GTSAC	7 cut(s)	212, 503, 930, 991, 1578, 2071, 3613
TspGWI	ACGGA	2 cut(s)	592, 3890
Van91I	CCANNNNNTGG	1 cut(s)	3641
VpaK11BI	GGWCC	9 cut(s)	50, 460, 1912, 2670, 3404, 3455, 3677, 3692, 3917
VspI	ATTAAT	1 cut(s)	1328
XagI	CCTNNNNNAGG	2 cut(s)	4174, 4191
XapI	RAATTY	3 cut(s)	392, 2574, 2837
XbaI	TCTAGA	1 cut(s)	2170
XceI	RCATGY	2 cut(s)	1712, 2666
XhoI	CTCGAG	2 cut(s)	1920, 3185
XmaJI	CCTAGG	1 cut(s)	1175
XmiI	GTMKAC	3 cut(s)	279, 2309, 3729
Zsp2I	ATGCAT	3 cut(s)	1434, 1710, 2325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.