FvH4_5g16650
ERF Family

Belongs to the small GTPase superfamily. Rho family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
9512800 .. 9516776
3977 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16650.t2

Sequence Viewer

Length: 636 bp
ATGGCTTCAAGTGCTTCCAAGTTCATCAAGTGTGTCACTGTTGGTGATGGAGCTGTGGGCAAGACCTGTATGCTCATTTGCTACACCAGTAACAAATTTCCCACTGATTATGTTCCCACAGTGTTTGATAACTTCAGCGCAAATGTGGTGGTTGAATCCACAACAGTGAACTTAGGCCTCTGGGACACAGCTGGGCAAGAAGATTACAATCGACTAAGGCCATTGAGCTACAGAGGGGCAGATGTCTTTGTCTTGGCTTTCTCTTTAGTTAGTCGTGCCAGCTATGAGAACATACTGAAAAAGTGGATCCCTGAACTGCAGCACTATGCTCCTGGAGTCCCAGTAGTACTTGCTGGCACCAAACTAGATCTTCGAGAGGATAAGCACTATTTAGCTGATCACCCAGGGTTGGTACCTGTTACGACTGCACAGGGAGAGGAGCTGCGGAAACAGATTGGTGCTGCATATTATATAGAATGTAGCTCAAAAACTCAGCAGAATGTGAAAGCAGTTTTTGATGCTGCTATCAGAGTGGTTATCAAGCCACCACAGAAGCAAAAGGAGAAAAAGAAAAAACCACGTCGAGGATGTCTAGTCAACATAGTCTGTGGGCGAAAGCTAGTGTGTCTCAAATGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

212

Amino Acids

23.37

Weight (kDa)

9.34

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 10 - 179 2.8e-48 Ras family
Roc PF08477 10 - 123 5.5e-22 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013804)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48040 AT3G48040 AT5G62880 AT5G62880
fragaria_vesca FvH4_5g16650 FvH4_5g16650
malus_domestica MD14G1184700.v1.1
prunus_persica Prupe.5G177400_v2.0.a1 Prupe.5G177400_v2.0.a1
pyrus_communis pycom14g15370
rosa_chinensis RchiOBHm_Chr7g0179501
rosa_laevigata RLG00000005349
rosa_multiflora Rmu_sc0000735.1_g000009
rosa_roxburghii Rroxscaffold_3G00273940
rosa_rugosa Rorug06G0424900
rosa_samantha Rh7CG025400
rosa_wichuraiana Rw7G001990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 2 cut(s) 356, 412
AciI CCGC 1 cut(s) 445
AclWI GGATC 2 cut(s) 301, 314
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 118
AfaI GTAC 2 cut(s) 348, 414
AfiI CCNNNNNNNGG 2 cut(s) 409, 584
AgsI TTSAA 2 cut(s) 9, 155
AjiI CACGTC 1 cut(s) 581
AjnI CCWGG 2 cut(s) 331, 403
AleI CACNNNNGTG 1 cut(s) 164
AluBI AGCT 8 cut(s) 53, 191, 228, 282, 395, 442, 483, 619
AluI AGCT 8 cut(s) 53, 191, 228, 282, 395, 442, 483, 619
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 2 cut(s) 301, 314
AoxI GGCC 2 cut(s) 175, 218
ApeKI GCWGC 4 cut(s) 319, 442, 461, 521
ApoI RAATTY 1 cut(s) 95
Asp718I GGTACC 1 cut(s) 412
AspLEI GCGC 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 56, 392
BamHI GGATCC 1 cut(s) 306
BanI GGYRCC 2 cut(s) 356, 412
BbvI GCAGC 4 cut(s) 331, 429, 448, 508
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 2 cut(s) 333, 405
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 3 cut(s) 365, 593, 620
BfmI CTRYAG 2 cut(s) 229, 317
BglII AGATCT 1 cut(s) 367
BisI GCNGC 4 cut(s) 320, 443, 462, 522
BlsI GCNGC 4 cut(s) 321, 444, 463, 523
BmcAI AGTACT 1 cut(s) 348
Bme1390I CCNGG 2 cut(s) 333, 405
BmgBI CACGTC 1 cut(s) 581
BmiI GGNNCC 3 cut(s) 308, 358, 414
BmrFI CCNGG 2 cut(s) 333, 405
BmrI ACTGGG 1 cut(s) 335
BmsI GCATC 1 cut(s) 508
BmuI ACTGGG 1 cut(s) 335
BpmI CTGGAG 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 403, 404
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 584
Bse1I ACTGG 2 cut(s) 87, 341
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 2 cut(s) 333, 405
BseDI CCNNGG 2 cut(s) 403, 404
BseGI GGATG 1 cut(s) 593
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 409, 584
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 2 cut(s) 87, 341
BseRI GAGGAG 1 cut(s) 452
BseXI GCAGC 4 cut(s) 331, 429, 448, 508
BseYI CCCAGC 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 411
BshFI GGCC 2 cut(s) 177, 220
BshNI GGYRCC 2 cut(s) 356, 412
BslFI GGGAC 2 cut(s) 197, 323
BslI CCNNNNNNNGG 2 cut(s) 409, 584
BsmAI GTCTC 1 cut(s) 632
BsmFI GGGAC 2 cut(s) 197, 323
BsnI GGCC 2 cut(s) 177, 220
Bsp143I GATC 3 cut(s) 306, 367, 397
BspACI CCGC 1 cut(s) 445
BspANI GGCC 2 cut(s) 177, 220
BspCNI CTCAG 1 cut(s) 505
BspLI GGNNCC 3 cut(s) 308, 358, 414
BspMAI CTGCAG 1 cut(s) 321
BspPI GGATC 2 cut(s) 301, 314
BspT107I GGYRCC 2 cut(s) 356, 412
BsrI ACTGG 2 cut(s) 87, 341
BssECI CCNNGG 2 cut(s) 403, 404
BssMI GATC 3 cut(s) 306, 367, 397
Bst2UI CCWGG 2 cut(s) 333, 405
Bst4CI ACNGT 3 cut(s) 40, 121, 166
BstC8I GCNNGC 2 cut(s) 280, 355
BstDEI CTNAG 3 cut(s) 172, 215, 492
BstF5I GGATG 1 cut(s) 593
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 3 cut(s) 309, 370, 400
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 3 cut(s) 306, 367, 397
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 333, 405
BstSCI CCNGG 2 cut(s) 331, 403
BstSFI CTRYAG 2 cut(s) 229, 317
BstV1I GCAGC 4 cut(s) 331, 429, 448, 508
BstX2I RGATCY 2 cut(s) 306, 367
BstYI RGATCY 2 cut(s) 306, 367
BsuRI GGCC 2 cut(s) 177, 220
BtrI CACGTC 1 cut(s) 581
BtsCI GGATG 1 cut(s) 593
BtsIMutI CAGTG 4 cut(s) 36, 102, 126, 171
Cac8I GCNNGC 2 cut(s) 280, 355
CfoI GCGC 1 cut(s) 140
Csp6I GTAC 2 cut(s) 347, 413
CspCI CAANNNNNGTGG 4 cut(s) 106, 129, 141, 164
CviQI GTAC 2 cut(s) 347, 413
DdeI CTNAG 3 cut(s) 172, 215, 492
DpnI GATC 3 cut(s) 308, 369, 399
DpnII GATC 3 cut(s) 306, 367, 397
Eco147I AGGCCT 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 331, 403
FaiI YATR 9 cut(s) 71, 111, 285, 293, 327, 466, 471, 473, 602
FaqI GGGAC 2 cut(s) 197, 323
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 4 cut(s) 320, 443, 462, 522
FokI GGATG 1 cut(s) 600
Fsp4HI GCNGC 4 cut(s) 320, 443, 462, 522
FspBI CTAG 3 cut(s) 365, 593, 620
GlaI GCGC 1 cut(s) 139
GluI GCNGC 4 cut(s) 320, 443, 462, 522
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 2 cut(s) 177, 220
HhaI GCGC 1 cut(s) 140
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 2 cut(s) 155, 336
HphI GGTGA 2 cut(s) 56, 392
Hpy166II GTNNAC 2 cut(s) 169, 598
Hpy188I TCNGA 1 cut(s) 530
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 2 cut(s) 169, 598
Hpy99I CGWCG 1 cut(s) 585
HpyCH4III ACNGT 3 cut(s) 40, 121, 166
HpyCH4IV ACGT 1 cut(s) 580
HpyCH4V TGCA 3 cut(s) 319, 428, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 3 cut(s) 172, 215, 492
HpySE526I ACGT 1 cut(s) 580
HspAI GCGC 1 cut(s) 138
KpnI GGTACC 1 cut(s) 416
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 3 cut(s) 306, 367, 397
LmnI GCTCC 3 cut(s) 50, 334, 439
Lsp1109I GCAGC 4 cut(s) 331, 429, 448, 508
LweI GCATC 1 cut(s) 508
MaeI CTAG 3 cut(s) 365, 593, 620
MaeII ACGT 1 cut(s) 580
MaeIII GTNAC 3 cut(s) 34, 89, 418
MalI GATC 3 cut(s) 308, 369, 399
MboI GATC 3 cut(s) 306, 367, 397
MboII GAAGA 2 cut(s) 212, 362
MflI RGATCY 2 cut(s) 306, 367
MluCI AATT 1 cut(s) 95
MlyI GAGTC 1 cut(s) 345
MnlI CCTC 5 cut(s) 188, 227, 370, 430, 578
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 191
MspR9I CCNGG 2 cut(s) 333, 405
MvaI CCWGG 2 cut(s) 333, 405
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 3 cut(s) 306, 367, 397
NlaIV GGNNCC 3 cut(s) 308, 358, 414
NmuCI GTSAC 1 cut(s) 34
OliI CACNNNNGTG 1 cut(s) 164
PasI CCCWGGG 1 cut(s) 404
PceI AGGCCT 1 cut(s) 177
PfeI GAWTC 1 cut(s) 155
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 4 cut(s) 321, 444, 463, 523
PleI GAGTC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 344
Psp6I CCWGG 2 cut(s) 331, 403
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 2 cut(s) 331, 403
PspN4I GGNNCC 3 cut(s) 308, 358, 414
PstI CTGCAG 1 cut(s) 321
PsuI RGATCY 2 cut(s) 306, 367
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 348, 414
RsaNI GTAC 2 cut(s) 347, 413
RseI CAYNNNNRTG 1 cut(s) 164
SatI GCNGC 4 cut(s) 320, 443, 462, 522
Sau3AI GATC 3 cut(s) 306, 367, 397
ScaI AGTACT 1 cut(s) 348
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 2 cut(s) 333, 405
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 2 cut(s) 229, 317
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 1 cut(s) 95
SseBI AGGCCT 1 cut(s) 177
SsiI CCGC 1 cut(s) 445
SspMI CTAG 3 cut(s) 365, 593, 620
StuI AGGCCT 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 331, 403
TaaI ACNGT 3 cut(s) 40, 121, 166
TaiI ACGT 1 cut(s) 583
TaqI TCGA 3 cut(s) 211, 373, 583
TasI AATT 1 cut(s) 95
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 1 cut(s) 155
TscAI CASTG 4 cut(s) 43, 109, 126, 171
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 4 cut(s) 319, 442, 461, 521
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 13
TspRI CASTG 4 cut(s) 43, 109, 126, 171
XapI RAATTY 1 cut(s) 95
XspI CTAG 3 cut(s) 365, 593, 620
ZrmI AGTACT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.