Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012346

Physical Location & Seq

Genomic Coordinates Reverse (-)

17872820 .. 17875530

Gene Structure 2711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGCGACAAGACGAGAATAACTCCGAGGAAGAATTCGTTGAGATTGATCCCACTGGTCGCTATGGCCGGTATAAAGAAGTTCTAGGCAAAGGAGCTTTCAAAGAAGTATACAGAGCATTTGACCAACTTGAAGGAATCGAAGTGGCTTGGAACCAAGTTAAGTTAGATGATAAATTCTGTAGCTCAGAGGATTTAGATCGTCTTTACTCTGAAGTTCACTTACTCAAAACCCTTAAACACAAAAGCATCATCAAATTCTACACTTCTTGGATCGATCACCAACACATGACTATCAATCTCATCACCGAAGTCTTCACTTCCGGAAATCTTAGACAGTACCGGAAGAAACATAAGTGTGTTGATCTAAGAGCATTGAAGAAATGGTCAAGGCAGATCTTAGAAGGGCTTGTTTATCTACATAGCCATGATCCTCCTGTGATCCATAGAGATCTTAAATGTGATAACATTTTCATTAATGGGAACCAAGGTGAGGTCAAAATTGGAGATCTAGGGCTAGCCGCGATTCTGCACCGCGCTCGCTCTGCTCATAGCGTCATCGGAACTCCTGAATTTATGGCGCCGGAACTCTATGAAGAGGACTATAATGTACTTGTCGATATCTACGCGTTTGGAATGTGTTTGCTTGAGCTGGTAACTTTTGAATACCCGTATTCCGAATGCACAAATGCTGCTCAGATTTATAGGAAAGTTACATCGGGAATCAAACCAGCCGCTCTTTTAAATGTGACTGATCCGCAAGTGAGAGCATTCATAGAGAAGTGTATCGCAAAGGTCTCGCAACGCTTGTCAGCCAAGGAACTACTTGATGATCCTTTTCTGAAATGCTACAAGGAAAATACCGAAAACGTCAGCTCTCACAAAGAAAATGGTTACAACGGAAACGGAATCGTGGATAAACTCTCGGATTCTGAGGTAGGCTTATTAACCGTAGAAGGCCAACGTAAAGACCTCAACACAATCTTCCTAAAACTACGTATCACCGATTCCAAAGGTCAAATCCGCAATATCCACTTCCCATTTAACATAGAGACAGACACATCTTTCTCAGTCGCCATCGAAATGGTCGAAGAACTAGACTTAACCGATGATCAAGACATCTCAACGATAGCTAAAATGATCGACACAGAGATACATTCACACATCCCCGATTGGACCCCTTCTCGACTTATCGGTGATGATTCAGCGGTACAAAAATGTTTGTCTTCTCCAGAGACGCTCCATTTAGATAGATTTCCTTCAGGGAGAAAATTCTGGTCCTCTCCTAAAGCTGGAGCTGGAGACTCACGTTCACCGTTTGCGCCACGGTCTAATTCTAAGTTGTCGTCAGCACAAGGACCGATCAATCAAGAAGTTGGGGTTATAGTAGAGAAACTTGAGTCTTTGTTGAGGAAACAGAGAGAGGAGATTGAAGAGATGCAGAGAGATCAAGAACGTATTGTTACTGAGTTCTTAAAAGAGTTTCCTCCTGAGATTTGTGAAGAGGCTTTGGTGAGATTGCAAGTTAAAGATTCTGATAACTTATTGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

516

Amino Acids

58.95

Weight (kDa)

5.41

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 185	1.5e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	3 - 180	2.3e-24	Protein tyrosine and serine/threonine kinase
OSR1_C	PF12202	234 - 289	1.8e-06	Oxidative-stress-responsive kinase 1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48260 AT3G48260
fragaria_vesca	FvH4_5g06360 FvH4_5g06360
malus_domestica	MD06G1165300.v1.1 MD14G1170800.v1.1
prunus_persica	Prupe.5G164900_v2.0.a1 Prupe.5G164900_v2.0.a1
pyrus_communis	pycom14g14270
rosa_chinensis	RchiOBHm_Chr7g0192481
rosa_laevigata	RLG00000004362
rosa_multiflora	Rmu_sc0003108.1_g000028
rosa_roxburghii	Rroxscaffold_3G00262990
rosa_rugosa	Rorug07G0001700
rosa_samantha	Rh7AG125800 Rh7BG128100 Rh7CG129700 Rh7DG129600
rosa_wichuraiana	Rw7G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	577
AccBSI	CCGCTC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	3 cut(s)	521, 534, 626
AccIII	TCCGGA	1 cut(s)	320
AciI	CCGC	6 cut(s)	519, 532, 732, 755, 1021, 1205
AclWI	GGATC	6 cut(s)	41, 278, 422, 433, 746, 824
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	5 cut(s)	32, 173, 254, 569, 1268
AcuI	CTGAAG	2 cut(s)	231, 1242
AcyI	GRCGYC	1 cut(s)	578
AfaI	GTAC	3 cut(s)	338, 609, 1209
AfiI	CCNNNNNNNGG	2 cut(s)	490, 1289
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	5 cut(s)	100, 131, 376, 662, 1430
AluBI	AGCT	7 cut(s)	95, 183, 649, 873, 1130, 1289, 1295
AluI	AGCT	7 cut(s)	95, 183, 649, 873, 1130, 1289, 1295
Alw26I	GTCTC	4 cut(s)	799, 1043, 1226, 1293
AlwI	GGATC	6 cut(s)	41, 278, 422, 433, 746, 824
Aor13HI	TCCGGA	1 cut(s)	320
AoxI	GGCC	2 cut(s)	64, 955
ApeKI	GCWGC	1 cut(s)	689
ApoI	RAATTY	5 cut(s)	32, 173, 254, 569, 1268
AseI	ATTAAT	1 cut(s)	474
AspLEI	GCGC	3 cut(s)	536, 580, 1321
AspS9I	GGNCC	3 cut(s)	1173, 1275, 1355
AsuHPI	GGTGA	7 cut(s)	269, 295, 500, 991, 1205, 1302, 1522
AsuNHI	GCTAGC	1 cut(s)	514
AvaII	GGWCC	3 cut(s)	1173, 1275, 1355
BanI	GGYRCC	1 cut(s)	577
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BbsI	GAAGAC	2 cut(s)	304, 1215
BbvI	GCAGC	1 cut(s)	676
BccI	CCATC	1 cut(s)	1082
BcgI	CGANNNNNNTGC	4 cut(s)	518, 552, 777, 811
BclI	TGATCA	1 cut(s)	1108
BcoDI	GTCTC	4 cut(s)	799, 1043, 1226, 1293
BfaI	CTAG	4 cut(s)	83, 509, 515, 1094
BfmI	CTRYAG	1 cut(s)	178
BfoI	RGCGCY	1 cut(s)	581
BglII	AGATCT	3 cut(s)	393, 448, 505
BisI	GCNGC	3 cut(s)	519, 690, 732
BlsI	GCNGC	3 cut(s)	520, 691, 733
Bme18I	GGWCC	3 cut(s)	1173, 1275, 1355
BmgT120I	GGNCC	3 cut(s)	1173, 1275, 1355
BmiI	GGNNCC	4 cut(s)	152, 482, 579, 1175
BmsI	GCATC	2 cut(s)	255, 1425
BmtI	GCTAGC	1 cut(s)	518
BpiI	GAAGAC	2 cut(s)	304, 1215
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	3 cut(s)	1212, 1311, 1317
BpuEI	CTTGAG	2 cut(s)	665, 1415
Bsa29I	ATCGAT	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	995
BsaBI	GATNNNNATC	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	578
BsaI	GGTCTC	1 cut(s)	799
BsaJI	CCNNGG	4 cut(s)	24, 484, 813, 1322
BsaWI	WCCGGW	2 cut(s)	320, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 1289
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	58
Bse8I	GATNNNNATC	1 cut(s)	195
BseAI	TCCGGA	1 cut(s)	320
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	4 cut(s)	24, 484, 813, 1322
BseGI	GGATG	1 cut(s)	1161
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	490, 1289
BseMII	CTCAG	6 cut(s)	198, 707, 921, 1080, 1455, 1479
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	1436
BseXI	GCAGC	1 cut(s)	676
BsgI	GTGCAG	1 cut(s)	512
Bsh1236I	CGCG	3 cut(s)	521, 534, 626
BshFI	GGCC	2 cut(s)	66, 957
BshNI	GGYRCC	1 cut(s)	577
BshVI	ATCGAT	1 cut(s)	273
BsiSI	CCGG	4 cut(s)	67, 321, 340, 581
BslI	CCNNNNNNNGG	2 cut(s)	490, 1289
BsmAI	GTCTC	4 cut(s)	799, 1043, 1226, 1293
BsmBI	CGTCTC	1 cut(s)	1226
BsmI	GAATGC	2 cut(s)	683, 767
BsnI	GGCC	2 cut(s)	66, 957
Bso31I	GGTCTC	1 cut(s)	799
Bsp13I	TCCGGA	1 cut(s)	320
BspACI	CCGC	6 cut(s)	519, 532, 732, 755, 1021, 1205
BspANI	GGCC	2 cut(s)	66, 957
BspCNI	CTCAG	6 cut(s)	197, 706, 922, 1079, 1456, 1480
BspDI	ATCGAT	1 cut(s)	273
BspEI	TCCGGA	1 cut(s)	320
BspFNI	CGCG	3 cut(s)	521, 534, 626
BspLI	GGNNCC	4 cut(s)	152, 482, 579, 1175
BspOI	GCTAGC	1 cut(s)	518
BspPI	GGATC	6 cut(s)	41, 278, 422, 433, 746, 824
BspT107I	GGYRCC	1 cut(s)	577
BspTNI	GGTCTC	1 cut(s)	799
BsrBI	CCGCTC	1 cut(s)	734
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	4 cut(s)	24, 484, 813, 1322
BssNAI	GTATAC	1 cut(s)	109
BssNI	GRCGYC	1 cut(s)	578
BssT1I	CCWWGG	2 cut(s)	484, 813
Bst1107I	GTATAC	1 cut(s)	109
Bst4CI	ACNGT	4 cut(s)	336, 949, 1314, 1326
Bst6I	CTCTTC	3 cut(s)	588, 1425, 1494
BstACI	GRCGYC	1 cut(s)	578
BstBAI	YACGTR	1 cut(s)	995
BstC8I	GCNNGC	2 cut(s)	516, 538
BstDSI	CCRYGG	1 cut(s)	1322
BstF5I	GGATG	1 cut(s)	1161
BstFNI	CGCG	3 cut(s)	521, 534, 626
BstH2I	RGCGCY	1 cut(s)	581
BstHHI	GCGC	3 cut(s)	536, 580, 1321
BstMAI	GTCTC	4 cut(s)	799, 1043, 1226, 1293
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstSFI	CTRYAG	1 cut(s)	178
BstSNI	TACGTA	1 cut(s)	995
BstUI	CGCG	3 cut(s)	521, 534, 626
BstV1I	GCAGC	1 cut(s)	676
BstV2I	GAAGAC	2 cut(s)	304, 1215
BstX2I	RGATCY	3 cut(s)	393, 448, 505
BstXI	CCANNNNNNTGG	1 cut(s)	1081
BstYI	RGATCY	3 cut(s)	393, 448, 505
BstZ17I	GTATAC	1 cut(s)	109
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	66, 957
BsuTUI	ATCGAT	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	1322
BtsCI	GGATG	1 cut(s)	1161
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	516, 538
CfoI	GCGC	3 cut(s)	536, 580, 1321
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	3 cut(s)	1173, 1275, 1355
ClaI	ATCGAT	1 cut(s)	273
CseI	GACGC	2 cut(s)	541, 1243
Csp6I	GTAC	3 cut(s)	337, 608, 1208
CviAII	CATG	2 cut(s)	286, 425
CviQI	GTAC	3 cut(s)	337, 608, 1208
DinI	GGCGCC	1 cut(s)	579
DraI	TTTAAA	1 cut(s)	741
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	3 cut(s)	588, 1425, 1494
EarI	CTCTTC	3 cut(s)	588, 1425, 1494
Eco105I	TACGTA	1 cut(s)	995
Eco130I	CCWWGG	2 cut(s)	484, 813
Eco31I	GGTCTC	1 cut(s)	799
Eco32I	GATATC	1 cut(s)	619
Eco47I	GGWCC	3 cut(s)	1173, 1275, 1355
Eco57I	CTGAAG	2 cut(s)	231, 1242
EcoRI	GAATTC	1 cut(s)	32
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	2 cut(s)	484, 813
EgeI	GGCGCC	1 cut(s)	579
EheI	GGCGCC	1 cut(s)	579
ErhI	CCWWGG	2 cut(s)	484, 813
Esp3I	CGTCTC	1 cut(s)	1226
FaeI	CATG	2 cut(s)	289, 428
FatI	CATG	2 cut(s)	285, 424
FbaI	TGATCA	1 cut(s)	1108
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	519, 690, 732
FokI	GGATG	1 cut(s)	1148
Fsp4HI	GCNGC	3 cut(s)	519, 690, 732
FspBI	CTAG	4 cut(s)	83, 509, 515, 1094
GlaI	GCGC	3 cut(s)	535, 579, 1320
GluI	GCNGC	3 cut(s)	519, 690, 732
GsuI	CTGGAG	3 cut(s)	1212, 1311, 1317
HaeII	RGCGCY	1 cut(s)	581
HaeIII	GGCC	2 cut(s)	66, 957
HapII	CCGG	4 cut(s)	67, 321, 340, 581
HgaI	GACGC	2 cut(s)	541, 1243
HhaI	GCGC	3 cut(s)	536, 580, 1321
Hin1I	GRCGYC	1 cut(s)	578
Hin1II	CATG	2 cut(s)	289, 428
Hin6I	GCGC	3 cut(s)	534, 578, 1319
HinP1I	GCGC	3 cut(s)	534, 578, 1319
HpaII	CCGG	4 cut(s)	67, 321, 340, 581
HphI	GGTGA	7 cut(s)	269, 295, 500, 991, 1205, 1302, 1522
Hpy166II	GTNNAC	3 cut(s)	109, 217, 1310
Hpy188III	TCNNGA	9 cut(s)	321, 566, 717, 1112, 1182, 1229, 1367, 1448, 1487
Hpy8I	GTNNAC	3 cut(s)	109, 217, 1310
HpyAV	CCTTC	5 cut(s)	125, 395, 947, 1188, 1266
HpyCH4III	ACNGT	4 cut(s)	336, 949, 1314, 1326
HpyCH4IV	ACGT	5 cut(s)	867, 961, 994, 1306, 1453
HpyCH4V	TGCA	4 cut(s)	529, 681, 1438, 1519
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpySE526I	ACGT	5 cut(s)	867, 961, 994, 1306, 1453
Hsp92I	GRCGYC	1 cut(s)	578
Hsp92II	CATG	2 cut(s)	289, 428
HspAI	GCGC	3 cut(s)	534, 578, 1319
KasI	GGCGCC	1 cut(s)	577
Kpn2I	TCCGGA	1 cut(s)	320
Ksp22I	TGATCA	1 cut(s)	1108
LmnI	GCTCC	3 cut(s)	92, 1242, 1292
Lsp1109I	GCAGC	1 cut(s)	676
LweI	GCATC	2 cut(s)	255, 1425
MaeI	CTAG	4 cut(s)	83, 509, 515, 1094
MaeII	ACGT	5 cut(s)	867, 961, 994, 1306, 1453
MaeIII	GTNAC	5 cut(s)	652, 709, 745, 890, 1459
MbiI	CCGCTC	1 cut(s)	734
MflI	RGATCY	3 cut(s)	393, 448, 505
MluCI	AATT	7 cut(s)	32, 173, 254, 498, 569, 1268, 1330
MluI	ACGCGT	1 cut(s)	624
Mly113I	GGCGCC	1 cut(s)	578
MlyI	GAGTC	2 cut(s)	1295, 1406
MroI	TCCGGA	1 cut(s)	320
MslI	CAYNNNNRTG	3 cut(s)	354, 423, 1079
MspA1I	CMGCKG	1 cut(s)	1205
MspI	CCGG	4 cut(s)	67, 321, 340, 581
Mva1269I	GAATGC	2 cut(s)	683, 767
MvnI	CGCG	3 cut(s)	521, 534, 626
MwoI	GCNNNNNNNGC	1 cut(s)	542
NarI	GGCGCC	1 cut(s)	578
NheI	GCTAGC	1 cut(s)	514
NlaIII	CATG	2 cut(s)	289, 428
NlaIV	GGNNCC	4 cut(s)	152, 482, 579, 1175
NmuCI	GTSAC	1 cut(s)	745
PcsI	WCGNNNNNNNCGW	1 cut(s)	1083
PctI	GAATGC	2 cut(s)	683, 767
PfeI	GAWTC	8 cut(s)	135, 523, 720, 906, 926, 1004, 1199, 1529
PkrI	GCNGC	3 cut(s)	520, 691, 733
PleI	GAGTC	2 cut(s)	1295, 1405
PluTI	GGCGCC	1 cut(s)	581
PpsI	GAGTC	2 cut(s)	1295, 1405
Ppu21I	YACGTR	1 cut(s)	995
PshBI	ATTAAT	1 cut(s)	474
PspN4I	GGNNCC	4 cut(s)	152, 482, 579, 1175
PspPI	GGNCC	3 cut(s)	1173, 1275, 1355
PsuI	RGATCY	3 cut(s)	393, 448, 505
RsaI	GTAC	3 cut(s)	338, 609, 1209
RsaNI	GTAC	3 cut(s)	337, 608, 1208
RseI	CAYNNNNRTG	3 cut(s)	354, 423, 1079
SatI	GCNGC	3 cut(s)	519, 690, 732
Sau96I	GGNCC	3 cut(s)	1173, 1275, 1355
SchI	GAGTC	2 cut(s)	1295, 1406
SfaNI	GCATC	2 cut(s)	255, 1425
SfcI	CTRYAG	1 cut(s)	178
SfoI	GGCGCC	1 cut(s)	579
SinI	GGWCC	3 cut(s)	1173, 1275, 1355
SmiMI	CAYNNNNRTG	3 cut(s)	354, 423, 1079
SmlI	CTYRAG	2 cut(s)	644, 1394
SmoI	CTYRAG	2 cut(s)	644, 1394
SnaBI	TACGTA	1 cut(s)	995
Sse9I	AATT	7 cut(s)	32, 173, 254, 498, 569, 1268, 1330
SsiI	CCGC	6 cut(s)	519, 532, 732, 755, 1021, 1205
SspDI	GGCGCC	1 cut(s)	577
SspMI	CTAG	4 cut(s)	83, 509, 515, 1094
StyI	CCWWGG	2 cut(s)	484, 813
TaaI	ACNGT	4 cut(s)	336, 949, 1314, 1326
TaiI	ACGT	5 cut(s)	870, 964, 997, 1309, 1456
TaqI	TCGA	7 cut(s)	138, 273, 615, 1077, 1086, 1140, 1183
TaqII	GACCGA	1 cut(s)	1372
TasI	AATT	7 cut(s)	32, 173, 254, 498, 569, 1268, 1330
TatI	WGTACW	1 cut(s)	607
TauI	GCSGC	2 cut(s)	521, 734
TfiI	GAWTC	8 cut(s)	135, 523, 720, 906, 926, 1004, 1199, 1529
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	1 cut(s)	689
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	3 cut(s)	460, 606, 760
TspGWI	ACGGA	2 cut(s)	912, 918
TspRI	CASTG	1 cut(s)	58
VpaK11BI	GGWCC	3 cut(s)	1173, 1275, 1355
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	5 cut(s)	32, 173, 254, 569, 1268
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	4 cut(s)	83, 509, 515, 1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.