Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012346

Physical Location & Seq

Genomic Coordinates Forward (+)

204329 .. 217064

Gene Structure 12736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0001700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2577 bp

ATGGATTTCAAGATTGCTACTGGAGTTGAGAAATCAGCTTGTCCGTCTCCTGCTCCGGTGAAAATCCCAGCAGTTGAATGTGAATGTCCGACGCCAGAGAAGATAGGTGACCCTTTGCCCACCAATTTACAGCAGGGACAGCTCCAACGTCCGGACAAGAGTGCAGCAGATTTCCTTGATCATATGAATTGTTCGTTAAGGTTGCTTCGTCTGCATAAAAAGTCAACTACGTTCCGGAATATATCTACTCAGGTGGAAATCCTGGCAAAAAGAAAGTTCTTATACAGGCATCTTGCTCAGATAAAATTTATACTTCCTGAAGCCATAAAGATAGATTGGGTTTTGGTGTCTGACAAGGAAACTCAATTCATGAAGCCGGATATAAACATCAGCTTGCTATTTGATATTGTAAAAGGTCACCGTGAGATATCTGATTTTACAGCTTTGCGCCAAGTTTTTGCTTCTAGGCTTATGAGTTTCTTTGCAATGCATCCTGAGGCTTCTGATGTTCCGGAGGCCATATTGCCAGAGCCTTTTAGCAAAAGAAGTCAGATACCTGTCCTGAAGCAATTGTCTACAGATTTTTCGATGGAACCTAAACCAACTTCAATTGAAACTGAGCTGTTGTCAGAAAAAGTCTGTCCATATCCATATATCAGTAGACACTTTTCGCGGAATAATGTTATTGCTAAAACAGAAAAAACCCAAGTCTTATCATCTCCACTACCTCTGCCATCGGCTGATGGTATGAATAACCAAAGTATTAAAAGTGGGCTGCAGAAAGAGTTTCTTGTTGTGTCTTACGATCCTGAGCAAGACATCAAAAATTGGCAGCGGAAAGAATCATGCTCCAAATCCAGTATTATTGACCACTCAATACATCTGAATCACCCTCAGCCTTCTTTTGGTTCCAGCATACCTGATAGCCCTCTTGTGAAGCTCACCTCATCCGCCAATAGTTTGATGATAGAAACTCCTCAACCATTGACACCAAGGAGATCGATGCGCAGTTGTGATGCCAAGCATGAGACCTTGAACACCCAAAAATCAACATCTTGTTATAAGCCTGCAAAAAGAGTTCTAGACTTCTCTGACCTAGAAGGTGATAAAAGTGCATTGGACTACACTGCAGATGAGTCAGGATGCTACAATATTGTACACCAAGACATCCCTAAAGCTATAGGAAAAACTGTCGGAGATAGATACCTCACTTGTTCTCCAGCAAGGCAAGAGGTAGAACGGGTCCTTGGTTGCTCTAATGAGGATTGCAAGAAGACTCAAACAAGCTCATTGATGCGCCTGCAGATGTCTACTCGCCTAGCTGACATGGTTACTCTAATTTATGGTGTATTGAAGTCTTTTAACTGGTCTCCTATCACCAAAGAGGAGCTTGTGCACAAGATAATTATGAATAGTCTTGATATTACTGAAAGAAAAGAAGTTGAAGAACAGTTTGGGCTTCTTGAAAGGCATGTTCCAGATTGGATCCAGAGCAAGTTGCTTTCTAGTGGGGATATTATGTACACCGTCAAGAAAGTGCCAAATTTGGACTCAGTTCTATCAAAGCTCAAGCATCTGACTGTTTCAGACCAAAAGATGAATCGGGAGAAACTTATGAAGATGGCTGGTGCTGTTCGCACTGGTGGAAAGGGTAGCATGAGGAGAAAGAAGAAGGCTGTTCACAAGACAACCACCACAGATGACAAAAGACTTCAGAGCACCCTCAAGAGAATAGGGGTGAATGCTATTCCTGCAATTGAGGAGGTCAACATTTTTAAGGATGATGTAGTTATTCAGTTCATAAATCCTAAAGTTCAAGCTTCTATTGCTGCCAACACTTGGGTTGTTAGTGGTTCTCCTCAAACAAAGAAGTTGCAGGATATTCTACCTAGTATTATCAGCCACTTGGGGCCAGATAACTTGGACAACTTGAAGAAACTAGCAGAGCAGTTTCAAAAGCAATCCCCTGGTGCTGGTGTTGGTGGAGCCACTGCCCCAGAGGATGATGATGATGAGGTCCCAGAGCTTGTTGCTGGGGAGACCTTTGAAGCTGCTGCCGAGGAGAAGGATAAGAAGGAGGAGATGCTTGACATCAAAGATGATAATCTCCGAAGTGGAGTGGAGTATTGGATCCTGCCGGTCATCCGTGGGAGAGGTGGGGGGCTAACTCTGCCCACCGCTGGCAACAGAAATAAAACTAACTGCCCACTTAATGTTGTTCAAGAGCAACACGAGGTATCCAATGGTCTTCCACTCACATTATCGCCTGTGAACTTGAAGAAAGGCGTTGTTCACCTATCCACTGATCTTAACATTAAGTTCTCTACTTCTGCAGCTGTAACAATCTGTCTGGAGACTTCAAAGGTTTGGAAGTTAGACAATTTTGATGAATCAGCAGGGCAATGGTTTGTCACGAGTGGCGGCGTTGAAGGCAACCCGGGTCCTAAAACTATAAGCAACTGGTTTAAGATTGAGAAATATGATGATGACTACAAGCTCGTTTTCTGCCCCACTGTCTGTAATTTCTGCAAGGTTCTATGCAGAGATGTTGGCATTTATCTTGAAGATGGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

858

Amino Acids

95.74

Weight (kDa)

7.5

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDT1	PF08839	68 - 114	5.9e-06	DNA replication factor CDT1 like
CDT1_C	PF16679	427 - 499	5e-08	DNA replication factor Cdt1 C-terminal domain
NAC	PF01849	568 - 623	4.5e-19	NAC domain
Kunitz_legume	PF00197	696 - 856	1.3e-48	Trypsin and protease inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48260 AT3G48260
fragaria_vesca	FvH4_5g06360 FvH4_5g06360
malus_domestica	MD06G1165300.v1.1 MD14G1170800.v1.1
prunus_persica	Prupe.5G164900_v2.0.a1 Prupe.5G164900_v2.0.a1
pyrus_communis	pycom14g14270
rosa_chinensis	RchiOBHm_Chr7g0192481
rosa_laevigata	RLG00000004362
rosa_multiflora	Rmu_sc0003108.1_g000028
rosa_roxburghii	Rroxscaffold_3G00262990
rosa_rugosa	Rorug07G0001700
rosa_samantha	Rh7AG125800 Rh7BG128100 Rh7CG129700 Rh7DG129600
rosa_wichuraiana	Rw7G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1062
Acc16I	TGCGCA	1 cut(s)	1007
AccB7I	CCANNNNNTGG	1 cut(s)	1839
AccI	GTMKAC	3 cut(s)	575, 661, 1310
AccII	CGCG	1 cut(s)	673
AccIII	TCCGGA	3 cut(s)	151, 234, 511
AciI	CCGC	5 cut(s)	673, 835, 951, 2178, 2421
AclWI	GGATC	5 cut(s)	800, 1480, 1493, 2125, 2138
AcsI	RAATTY	2 cut(s)	305, 1543
AcuI	CTGAAG	3 cut(s)	339, 584, 1697
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	2 cut(s)	1158, 1523
AfiI	CCNNNNNNNGG	5 cut(s)	151, 905, 1839, 1973, 2180
AjnI	CCWGG	2 cut(s)	261, 1966
AjuI	GAANNNNNNNTTGG	4 cut(s)	1230, 1262, 1437, 1469
Alw21I	GWGCWC	2 cut(s)	1398, 1721
Alw26I	GTCTC	5 cut(s)	51, 1022, 1374, 2033, 2348
Alw44I	GTGCAC	1 cut(s)	1394
AlwI	GGATC	5 cut(s)	800, 1480, 1493, 2125, 2138
Ama87I	CYCGRG	1 cut(s)	2437
Aor13HI	TCCGGA	3 cut(s)	151, 234, 511
AoxI	GGCC	2 cut(s)	516, 1910
ApaLI	GTGCAC	1 cut(s)	1394
ApeKI	GCWGC	7 cut(s)	164, 775, 832, 1829, 2051, 2054, 2333
ApoI	RAATTY	2 cut(s)	305, 1543
AspLEI	GCGC	3 cut(s)	450, 1008, 1299
AspS9I	GGNCC	4 cut(s)	1243, 1910, 2017, 2441
AsuC2I	CCSGG	2 cut(s)	2438, 2439
AsuHPI	GGTGA	9 cut(s)	70, 119, 410, 881, 934, 1115, 1369, 1750, 2285
AvaI	CYCGRG	1 cut(s)	2437
AvaII	GGWCC	3 cut(s)	1243, 2017, 2441
AxyI	CCTNAGG	1 cut(s)	495
BaeGI	GKGCMC	1 cut(s)	1398
BamHI	GGATCC	2 cut(s)	1485, 2130
BauI	CACGAG	2 cut(s)	2231, 2413
BbsI	GAAGAC	2 cut(s)	1280, 2240
Bbv12I	GWGCWC	2 cut(s)	1398, 1721
BbvCI	CCTCAGC	1 cut(s)	894
BbvI	GCAGC	7 cut(s)	176, 762, 844, 1816, 2038, 2041, 2345
BccI	CCATC	5 cut(s)	583, 737, 742, 1615, 2561
BciT130I	CCWGG	2 cut(s)	263, 1968
BciVI	GTATCC	1 cut(s)	2248
BclI	TGATCA	1 cut(s)	178
BcnI	CCSGG	2 cut(s)	2438, 2439
BcoDI	GTCTC	5 cut(s)	51, 1022, 1374, 2033, 2348
BfaI	CTAG	7 cut(s)	465, 1082, 1097, 1319, 1506, 1890, 1940
BfmI	CTRYAG	6 cut(s)	576, 776, 1128, 1179, 1301, 2331
BfuI	GTATCC	1 cut(s)	2248
BisI	GCNGC	8 cut(s)	165, 776, 833, 1830, 2052, 2055, 2334, 2422
BlsI	GCNGC	8 cut(s)	166, 777, 834, 1831, 2053, 2056, 2335, 2423
Bme1390I	CCNGG	4 cut(s)	263, 1968, 2438, 2439
Bme18I	GGWCC	3 cut(s)	1243, 2017, 2441
BmeT110I	CYCGRG	1 cut(s)	2437
BmgT120I	GGNCC	4 cut(s)	1243, 1910, 2017, 2441
BmiI	GGNNCC	9 cut(s)	594, 910, 1244, 1487, 1911, 1987, 2019, 2132, 2442
BmrFI	CCNGG	4 cut(s)	263, 1968, 2438, 2439
BmsI	GCATC	8 cut(s)	298, 499, 993, 1006, 1133, 1284, 1582, 2073
BpiI	GAAGAC	2 cut(s)	1280, 2240
BpmI	CTGGAG	3 cut(s)	42, 1203, 2372
Bpu10I	CCTNAGC	2 cut(s)	810, 894
BpuEI	CTTGAG	2 cut(s)	1553, 1709
BpuMI	CCSGG	2 cut(s)	2438, 2439
Bsa29I	ATCGAT	1 cut(s)	1001
BsaBI	GATNNNNATC	1 cut(s)	2103
BsaHI	GRCGYC	1 cut(s)	92
BsaI	GGTCTC	3 cut(s)	1022, 1374, 2033
BsaJI	CCNNGG	6 cut(s)	992, 1246, 1966, 2058, 2146, 2437
BsaWI	WCCGGW	4 cut(s)	55, 151, 234, 511
BsaXI	ACNNNNNCTCC	2 cut(s)	1201, 1231
Bsc4I	CCNNNNNNNGG	5 cut(s)	151, 905, 1839, 1973, 2180
Bse118I	RCCGGY	1 cut(s)	2137
Bse1I	ACTGG	5 cut(s)	25, 858, 1370, 1645, 2465
Bse21I	CCTNAGG	1 cut(s)	495
Bse3DI	GCAATG	2 cut(s)	492, 2408
Bse8I	GATNNNNATC	1 cut(s)	2103
BseAI	TCCGGA	3 cut(s)	151, 234, 511
BseBI	CCWGG	2 cut(s)	263, 1968
BseCI	ATCGAT	1 cut(s)	1001
BseDI	CCNNGG	6 cut(s)	992, 1246, 1966, 2058, 2146, 2437
BseGI	GGATG	7 cut(s)	490, 947, 1148, 1167, 1786, 2008, 2142
BseJI	GATNNNNATC	1 cut(s)	2103
BseLI	CCNNNNNNNGG	5 cut(s)	151, 905, 1839, 1973, 2180
BseMI	GCAATG	2 cut(s)	492, 2408
BseMII	CTCAG	7 cut(s)	263, 311, 486, 609, 801, 908, 1566
BseNI	ACTGG	5 cut(s)	25, 858, 1370, 1645, 2465
BseRI	GAGGAG	7 cut(s)	966, 1400, 1675, 1775, 1848, 2075, 2093
BseSI	GKGCMC	1 cut(s)	1398
BseXI	GCAGC	7 cut(s)	176, 762, 844, 1816, 2038, 2041, 2345
BseYI	CCCAGC	2 cut(s)	67, 2033
BsgI	GTGCAG	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	673
BshFI	GGCC	2 cut(s)	518, 1912
BshVI	ATCGAT	1 cut(s)	1001
BsiHKAI	GWGCWC	2 cut(s)	1398, 1721
BsiHKCI	CYCGRG	1 cut(s)	2437
BsiSI	CCGG	7 cut(s)	56, 152, 235, 377, 512, 2138, 2438
BslFI	GGGAC	2 cut(s)	150, 2003
BslI	CCNNNNNNNGG	5 cut(s)	151, 905, 1839, 1973, 2180
BsmAI	GTCTC	5 cut(s)	51, 1022, 1374, 2033, 2348
BsmBI	CGTCTC	1 cut(s)	51
BsmFI	GGGAC	2 cut(s)	150, 2003
BsmI	GAATGC	1 cut(s)	1747
BsnI	GGCC	2 cut(s)	518, 1912
Bso31I	GGTCTC	3 cut(s)	1022, 1374, 2033
BsoBI	CYCGRG	1 cut(s)	2437
Bsp1286I	GDGCHC	2 cut(s)	1398, 1721
Bsp13I	TCCGGA	3 cut(s)	151, 234, 511
Bsp1407I	TGTACA	2 cut(s)	1156, 1521
Bsp143I	GATC	6 cut(s)	178, 805, 998, 1485, 2130, 2305
BspACI	CCGC	5 cut(s)	673, 835, 951, 2178, 2421
BspANI	GGCC	2 cut(s)	518, 1912
BspCNI	CTCAG	7 cut(s)	262, 310, 487, 610, 802, 907, 1565
BspDI	ATCGAT	1 cut(s)	1001
BspEI	TCCGGA	3 cut(s)	151, 234, 511
BspFNI	CGCG	1 cut(s)	673
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	9 cut(s)	594, 910, 1244, 1487, 1911, 1987, 2019, 2132, 2442
BspMAI	CTGCAG	4 cut(s)	780, 1132, 1305, 2335
BspPI	GGATC	5 cut(s)	800, 1480, 1493, 2125, 2138
BspTNI	GGTCTC	3 cut(s)	1022, 1374, 2033
BsrDI	GCAATG	2 cut(s)	492, 2408
BsrFI	RCCGGY	1 cut(s)	2137
BsrGI	TGTACA	2 cut(s)	1156, 1521
BsrI	ACTGG	5 cut(s)	25, 858, 1370, 1645, 2465
BssAI	RCCGGY	1 cut(s)	2137
BssECI	CCNNGG	6 cut(s)	992, 1246, 1966, 2058, 2146, 2437
BssMI	GATC	6 cut(s)	178, 805, 998, 1485, 2130, 2305
BssNI	GRCGYC	1 cut(s)	92
BssSI	CACGAG	2 cut(s)	2231, 2413
BssT1I	CCWWGG	2 cut(s)	992, 1246
Bst2BI	CACGAG	2 cut(s)	2231, 2413
Bst2UI	CCWGG	2 cut(s)	263, 1968
Bst4CI	ACNGT	6 cut(s)	422, 1192, 1452, 1528, 1582, 2515
BstACI	GRCGYC	1 cut(s)	92
BstAUI	TGTACA	2 cut(s)	1156, 1521
BstC8I	GCNNGC	4 cut(s)	395, 1068, 1301, 2182
BstDEI	CTNAG	7 cut(s)	249, 297, 495, 618, 810, 894, 1552
BstDSI	CCRYGG	1 cut(s)	2146
BstEII	GGTNACC	2 cut(s)	107, 416
BstF5I	GGATG	7 cut(s)	490, 947, 1148, 1167, 1786, 2008, 2142
BstFNI	CGCG	1 cut(s)	673
BstHHI	GCGC	3 cut(s)	450, 1008, 1299
BstKTI	GATC	6 cut(s)	181, 808, 1001, 1488, 2133, 2308
BstMAI	GTCTC	5 cut(s)	51, 1022, 1374, 2033, 2348
BstMBI	GATC	6 cut(s)	178, 805, 998, 1485, 2130, 2305
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 211, 1751, 1826, 2170, 2430
BstNI	CCWGG	2 cut(s)	263, 1968
BstNSI	RCATGY	1 cut(s)	1475
BstPI	GGTNACC	2 cut(s)	107, 416
BstSCI	CCNGG	4 cut(s)	261, 1966, 2436, 2437
BstSFI	CTRYAG	6 cut(s)	576, 776, 1128, 1179, 1301, 2331
BstSLI	GKGCMC	1 cut(s)	1398
BstUI	CGCG	1 cut(s)	673
BstV1I	GCAGC	7 cut(s)	176, 762, 844, 1816, 2038, 2041, 2345
BstV2I	GAAGAC	2 cut(s)	1280, 2240
BstX2I	RGATCY	2 cut(s)	1485, 2130
BstYI	RGATCY	2 cut(s)	1485, 2130
Bsu15I	ATCGAT	1 cut(s)	1001
Bsu36I	CCTNAGG	1 cut(s)	495
BsuI	GTATCC	1 cut(s)	2248
BsuRI	GGCC	2 cut(s)	518, 1912
BsuTUI	ATCGAT	1 cut(s)	1001
BtgI	CCRYGG	1 cut(s)	2146
BtsCI	GGATG	7 cut(s)	490, 947, 1148, 1167, 1786, 2008, 2142
BtsI	GCAGTG	2 cut(s)	1125, 1989
BtsIMutI	CAGTG	5 cut(s)	1125, 1638, 1989, 2301, 2511
Cac8I	GCNNGC	4 cut(s)	395, 1068, 1301, 2182
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	3 cut(s)	450, 1008, 1299
Cfr10I	RCCGGY	1 cut(s)	2137
Cfr13I	GGNCC	4 cut(s)	1243, 1910, 2017, 2441
Cfr9I	CCCGGG	1 cut(s)	2437
ClaI	ATCGAT	1 cut(s)	1001
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	1157, 1522
CviAII	CATG	6 cut(s)	370, 846, 1025, 1327, 1472, 1657
CviQI	GTAC	2 cut(s)	1157, 1522
DdeI	CTNAG	7 cut(s)	249, 297, 495, 618, 810, 894, 1552
DpnI	GATC	6 cut(s)	180, 807, 1000, 1487, 2132, 2307
DpnII	GATC	6 cut(s)	178, 805, 998, 1485, 2130, 2305
EciI	GGCGGA	1 cut(s)	940
Eco130I	CCWWGG	2 cut(s)	992, 1246
Eco31I	GGTCTC	3 cut(s)	1022, 1374, 2033
Eco32I	GATATC	1 cut(s)	429
Eco47I	GGWCC	3 cut(s)	1243, 2017, 2441
Eco57I	CTGAAG	3 cut(s)	339, 584, 1697
Eco81I	CCTNAGG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	2437
Eco91I	GGTNACC	2 cut(s)	107, 416
EcoO109I	RGGNCCY	3 cut(s)	1243, 2017, 2441
EcoO65I	GGTNACC	2 cut(s)	107, 416
EcoRII	CCWGG	2 cut(s)	261, 1966
EcoRV	GATATC	1 cut(s)	429
EcoT14I	CCWWGG	2 cut(s)	992, 1246
EcoT22I	ATGCAT	1 cut(s)	492
ErhI	CCWWGG	2 cut(s)	992, 1246
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	6 cut(s)	373, 849, 1028, 1330, 1475, 1660
FalI	AAGNNNNNCTT	4 cut(s)	774, 806, 1374, 1406
FaqI	GGGAC	2 cut(s)	150, 2003
FatI	CATG	6 cut(s)	369, 845, 1024, 1326, 1471, 1656
FauNDI	CATATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	178
FblI	GTMKAC	3 cut(s)	575, 661, 1310
Fnu4HI	GCNGC	8 cut(s)	165, 776, 833, 1830, 2052, 2055, 2334, 2422
FokI	GGATG	7 cut(s)	477, 934, 1154, 1155, 1793, 2015, 2129
Fsp4HI	GCNGC	8 cut(s)	165, 776, 833, 1830, 2052, 2055, 2334, 2422
FspBI	CTAG	7 cut(s)	465, 1082, 1097, 1319, 1506, 1890, 1940
FspI	TGCGCA	1 cut(s)	1007
GlaI	GCGC	3 cut(s)	449, 1007, 1298
GluI	GCNGC	8 cut(s)	165, 776, 833, 1830, 2052, 2055, 2334, 2422
GsaI	CCCAGC	2 cut(s)	71, 2037
GsuI	CTGGAG	3 cut(s)	42, 1203, 2372
HaeIII	GGCC	2 cut(s)	518, 1912
HapII	CCGG	7 cut(s)	56, 152, 235, 377, 512, 2138, 2438
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	3 cut(s)	450, 1008, 1299
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	6 cut(s)	373, 849, 1028, 1330, 1475, 1660
Hin6I	GCGC	3 cut(s)	448, 1006, 1297
HinP1I	GCGC	3 cut(s)	448, 1006, 1297
HincII	GTYRAC	2 cut(s)	225, 1768
HindII	GTYRAC	2 cut(s)	225, 1768
HindIII	AAGCTT	1 cut(s)	1818
HinfI	GANTC	7 cut(s)	842, 886, 1136, 1276, 1550, 1600, 2390
HpaII	CCGG	7 cut(s)	56, 152, 235, 377, 512, 2138, 2438
HphI	GGTGA	9 cut(s)	70, 119, 410, 881, 934, 1115, 1369, 1750, 2285
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	6 cut(s)	909, 1094, 1666, 2059, 2068, 2423
HpyCH4III	ACNGT	6 cut(s)	422, 1192, 1452, 1528, 1582, 2515
HpyCH4IV	ACGT	2 cut(s)	148, 230
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 211, 1751, 1826, 2170, 2430
HpyF3I	CTNAG	7 cut(s)	249, 297, 495, 618, 810, 894, 1552
HpySE526I	ACGT	2 cut(s)	148, 230
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	6 cut(s)	373, 849, 1028, 1330, 1475, 1660
HspAI	GCGC	3 cut(s)	448, 1006, 1297
Kpn2I	TCCGGA	3 cut(s)	151, 234, 511
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	6 cut(s)	178, 805, 998, 1485, 2130, 2305
LmnI	GCTCC	5 cut(s)	58, 147, 854, 1387, 1985
Lsp1109I	GCAGC	7 cut(s)	176, 762, 844, 1816, 2038, 2041, 2345
LweI	GCATC	8 cut(s)	298, 499, 993, 1006, 1133, 1284, 1582, 2073
MaeI	CTAG	7 cut(s)	465, 1082, 1097, 1319, 1506, 1890, 1940
MaeII	ACGT	2 cut(s)	148, 230
MaeIII	GTNAC	5 cut(s)	107, 416, 1330, 2338, 2410
MalI	GATC	6 cut(s)	180, 807, 1000, 1487, 2132, 2307
MboI	GATC	6 cut(s)	178, 805, 998, 1485, 2130, 2305
MboII	GAAGA	9 cut(s)	112, 1285, 1457, 1630, 1681, 1945, 2240, 2290, 2576
MfeI	CAATTG	3 cut(s)	569, 609, 1755
MflI	RGATCY	2 cut(s)	1485, 2130
MhlI	GDGCHC	2 cut(s)	1398, 1721
MlyI	GAGTC	3 cut(s)	1145, 1270, 1544
MmeI	TCCRAC	3 cut(s)	113, 169, 1174
Mph1103I	ATGCAT	1 cut(s)	492
MroI	TCCGGA	3 cut(s)	151, 234, 511
MseI	TTAA	8 cut(s)	197, 765, 1362, 1776, 2211, 2310, 2316, 2466
MspA1I	CMGCKG	3 cut(s)	835, 2180, 2336
MspI	CCGG	7 cut(s)	56, 152, 235, 377, 512, 2138, 2438
MspR9I	CCNGG	4 cut(s)	263, 1968, 2438, 2439
MunI	CAATTG	3 cut(s)	569, 609, 1755
Mva1269I	GAATGC	1 cut(s)	1747
MvaI	CCWGG	2 cut(s)	263, 1968
MvnI	CGCG	1 cut(s)	673
MwoI	GCNNNNNNNGC	6 cut(s)	139, 211, 1751, 1826, 2170, 2430
NciI	CCSGG	2 cut(s)	2438, 2439
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	6 cut(s)	178, 805, 998, 1485, 2130, 2305
NlaIII	CATG	6 cut(s)	373, 849, 1028, 1330, 1475, 1660
NlaIV	GGNNCC	9 cut(s)	594, 910, 1244, 1487, 1911, 1987, 2019, 2132, 2442
NmeAIII	GCCGAG	1 cut(s)	2083
NmuCI	GTSAC	3 cut(s)	107, 416, 2410
NsbI	TGCGCA	1 cut(s)	1007
NsiI	ATGCAT	1 cut(s)	492
NspI	RCATGY	1 cut(s)	1475
PagI	TCATGA	1 cut(s)	369
PctI	GAATGC	1 cut(s)	1747
PfeI	GAWTC	4 cut(s)	842, 886, 1600, 2390
PflMI	CCANNNNNTGG	1 cut(s)	1839
PkrI	GCNGC	8 cut(s)	166, 777, 834, 1831, 2053, 2056, 2335, 2423
PleI	GAGTC	3 cut(s)	1144, 1270, 1544
PpsI	GAGTC	3 cut(s)	1144, 1270, 1544
PpuMI	RGGWCCY	3 cut(s)	1243, 2017, 2441
PsiI	TTATAA	1 cut(s)	1062
Psp5II	RGGWCCY	3 cut(s)	1243, 2017, 2441
Psp6I	CCWGG	2 cut(s)	261, 1966
PspEI	GGTNACC	2 cut(s)	107, 416
PspFI	CCCAGC	2 cut(s)	67, 2033
PspGI	CCWGG	2 cut(s)	261, 1966
PspN4I	GGNNCC	9 cut(s)	594, 910, 1244, 1487, 1911, 1987, 2019, 2132, 2442
PspPI	GGNCC	4 cut(s)	1243, 1910, 2017, 2441
PspPPI	RGGWCCY	3 cut(s)	1243, 2017, 2441
PstI	CTGCAG	4 cut(s)	780, 1132, 1305, 2335
PsuI	RGATCY	2 cut(s)	1485, 2130
PvuII	CAGCTG	1 cut(s)	2336
RsaI	GTAC	2 cut(s)	1158, 1523
RsaNI	GTAC	2 cut(s)	1157, 1522
SaqAI	TTAA	8 cut(s)	197, 765, 1362, 1776, 2211, 2310, 2316, 2466
SatI	GCNGC	8 cut(s)	165, 776, 833, 1830, 2052, 2055, 2334, 2422
Sau3AI	GATC	6 cut(s)	178, 805, 998, 1485, 2130, 2305
Sau96I	GGNCC	4 cut(s)	1243, 1910, 2017, 2441
SchI	GAGTC	3 cut(s)	1145, 1270, 1544
ScrFI	CCNGG	4 cut(s)	263, 1968, 2438, 2439
SduI	GDGCHC	2 cut(s)	1398, 1721
SfaNI	GCATC	8 cut(s)	298, 499, 993, 1006, 1133, 1284, 1582, 2073
SfcI	CTRYAG	6 cut(s)	576, 776, 1128, 1179, 1301, 2331
SinI	GGWCC	3 cut(s)	1243, 2017, 2441
SmaI	CCCGGG	1 cut(s)	2439
SmlI	CTYRAG	2 cut(s)	1568, 1724
SmoI	CTYRAG	2 cut(s)	1568, 1724
SsiI	CCGC	5 cut(s)	673, 835, 951, 2178, 2421
SspI	AATATT	1 cut(s)	1153
SspMI	CTAG	7 cut(s)	465, 1082, 1097, 1319, 1506, 1890, 1940
StyD4I	CCNGG	4 cut(s)	261, 1966, 2436, 2437
StyI	CCWWGG	2 cut(s)	992, 1246
TaaI	ACNGT	6 cut(s)	422, 1192, 1452, 1528, 1582, 2515
TaiI	ACGT	2 cut(s)	151, 233
TaqI	TCGA	2 cut(s)	587, 1001
TatI	WGTACW	2 cut(s)	1156, 1521
TauI	GCSGC	1 cut(s)	2424
TfiI	GAWTC	4 cut(s)	842, 886, 1600, 2390
Tru1I	TTAA	8 cut(s)	197, 765, 1362, 1776, 2211, 2310, 2316, 2466
Tru9I	TTAA	8 cut(s)	197, 765, 1362, 1776, 2211, 2310, 2316, 2466
TscAI	CASTG	5 cut(s)	1132, 1645, 1996, 2308, 2518
TseFI	GTSAC	3 cut(s)	107, 416, 2410
TseI	GCWGC	7 cut(s)	164, 775, 832, 1829, 2051, 2054, 2333
Tsp45I	GTSAC	3 cut(s)	107, 416, 2410
TspDTI	ATGAA	9 cut(s)	200, 358, 386, 764, 1424, 1613, 1631, 1789, 2403
TspGWI	ACGGA	2 cut(s)	33, 2135
TspMI	CCCGGG	1 cut(s)	2437
TspRI	CASTG	5 cut(s)	1132, 1645, 1996, 2308, 2518
Van91I	CCANNNNNTGG	1 cut(s)	1839
VneI	GTGCAC	1 cut(s)	1394
VpaK11BI	GGWCC	3 cut(s)	1243, 2017, 2441
XapI	RAATTY	2 cut(s)	305, 1543
XbaI	TCTAGA	1 cut(s)	1081
XceI	RCATGY	1 cut(s)	1475
XmaI	CCCGGG	1 cut(s)	2437
XmiI	GTMKAC	3 cut(s)	575, 661, 1310
XspI	CTAG	7 cut(s)	465, 1082, 1097, 1319, 1506, 1890, 1940
Zsp2I	ATGCAT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.