FvH4_5g06360

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
3730987 .. 3735159
4173 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06360.t2

Sequence Viewer

Length: 1764 bp
ATGGATTTGCCGTCGGACCAGGAAGGGGATGATGCTGAAGCTGAGTTCGTCGAGGTTGATCCAACTGGTCGTTACGGACGGTATAAAGAGGTTTTAGGCAAAGGGGCTTTCAAGAAAGTATACCGAGCTTTTGATGAATTGGAAGGAATTGAAGTAGCTTGGAATCAGGTTAGGGTGGCAGATCTGTTGCGCAACTCTGAAGATTTGGAGCGGCTTTATTCGGAAGTTCATCTGCTCAAGACTCTGAAGCACAAGAATATTATCAAGTTTTACAACTCTTGGGTTGATATCAAGCATGAAAACATCAACTTCATTACAGAGATTTTCACCTCGGGAACCTTGAGGCAATACCGGAGGAAACATAAGAATGTTGATTTGAGGGCCTTAAAGAAGTGGTCTAGGCAGATCTTAGAAGGCCTTCTGTATCTTCATCGGCATGACCCGCCAGTTATTCACCGAGATTTGAAGTGTGACAACATTTTTGTCAATGGGAACCAAGGTGAGGTGAAAATTGGTGACTTAGGACTTGCTGCTATTCTTCGTCAGGCTCGTTCAGCTCACAGTGTTATTGGTACTCCTGAGTTTATGGCTCCAGAGCTTTATGAAGAGGAATATAATGAGCTTGTCGACATTTATGCCTTTGGCATGTGCTTATTAGAGTTGGTGACCTTTGAGTATCCTTATGTTGAGTGTACTAATGCTGCTCAGATCTTCAAGAAAGTGACATCAGGAGTAAAGCCAGCATCATTGTCAAAAGTGTCAGATCCCGGAGTAAAAGCATTTATAGAAAAATGCATTGTAAAAGTGTCCGATCGTTTGCCTGCTGAGGCACTTTTAATGGATCCTTTTCTTCAATCAGATGGGGATCGGGAAAGTATTCCTCATTCTCTACAACCCAAATCTCATTATCCAGAAGGTACTTCTGATGAGAATGATGGTGTAGATCTTCATTCTGAGTTGGGCAGAGACTTCACGGTGCAAGGCCAGAGGAAAGATGACACAATTTTTCTGAAACTACGAATTGCAGATTCTACAGGTCATTTTCGAAATATCCACTTTCCATTTGATATTGGTGAAGACACTGCAATTGCTGTTGCTAGTGAAATGGTTCAAGAGTTGGATCTGACAGATCAAGATGTTTCAACAATTGCTGAACTCATCGACTCTGAGATTCAGTCCCATATTCCAGATTGGATTTCTGGAGATAATCTTGATATTGATGTGTCAACTTCTAATAGCCCAGTTTCTGACTTCAAGGAAGATGCTTCTCCACTGATAAATGAGTTCAGTAATCTAGCATTAGAACGATTGCCTTCAGGCCGCAAATACTGGTCCGACTCTCCCAAGGCATGCACAAGTAATGGAAACTCTCCACTGAAGCATGGTTATTCTAACATGCATTCTCCAGTGGATTCAGTCAATAATACAAGAGGTAGTGAAGACAATGATAATTCTCCTGATAGTCGAGAAATATCTCCTCGAAATGAAGATGATCCAAACGGTGCAGAAAACTCTGATTTAATGAATGGCGATAGTCTTGATGCTGCTATTGATCTGCATAATAGAAATGGAGCTCATTTATTTGAACCAGAAGAAGTCAAGATCGTTGTTGAGAAACTTGAGAATCTATTGGTGCAACAGAAAAAGGAACTGGATGAACTCAAAAGGAAGCATGATTTAGAGATATCAGATGTCCTGCATGAATTACCTCCAGCTTTCTGTCAGAAGGTTTTAGATAATTGTAAGTTGAAGATTTCACTCTGA

Protein Analysis

588

Amino Acids

66.3

Weight (kDa)

4.89

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 29 - 284 2.8e-49 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 29 - 268 2.1e-34 Protein tyrosine and serine/threonine kinase
OSR1_C PF12202 339 - 393 6.3e-06 Oxidative-stress-responsive kinase 1 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012346)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 191
AccBSI CCGCTC 1 cut(s) 211
AccI GTMKAC 2 cut(s) 120, 627
AciI CCGC 3 cut(s) 211, 443, 1321
AclWI GGATC 7 cut(s) 53, 758, 836, 849, 873, 1128, 1487
AcuI CTGAAG 5 cut(s) 57, 219, 266, 1299, 1397
AfaI GTAC 3 cut(s) 574, 694, 919
AfiI CCNNNNNNNGG 2 cut(s) 25, 502
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 8 cut(s) 41, 128, 158, 557, 598, 622, 1574, 1715
AluI AGCT 8 cut(s) 41, 128, 158, 557, 598, 622, 1574, 1715
Alw21I GWGCWC 1 cut(s) 1576
Alw26I GTCTC 1 cut(s) 960
AlwI GGATC 7 cut(s) 53, 758, 836, 849, 873, 1128, 1487
AlwNI CAGNNNCTG 1 cut(s) 1247
Ama87I CYCGRG 1 cut(s) 331
AoxI GGCC 4 cut(s) 381, 415, 982, 1318
ApeKI GCWGC 3 cut(s) 530, 701, 1544
ArsI GACNNNNNNTTYG 2 cut(s) 464, 496
Asp700I GAANNNNTTC 3 cut(s) 417, 876, 1107
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 3 cut(s) 16, 381, 1332
AsuC2I CCSGG 1 cut(s) 768
AsuHPI GGTGA 7 cut(s) 319, 446, 512, 517, 527, 676, 1085
AsuII TTCGAA 1 cut(s) 1045
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 2 cut(s) 16, 1332
BamHI GGATCC 1 cut(s) 841
BanII GRGCYC 1 cut(s) 1576
BbsI GAAGAC 2 cut(s) 1083, 1446
Bbv12I GWGCWC 1 cut(s) 1576
BbvCI CCTCAGC 1 cut(s) 825
BbvI GCAGC 3 cut(s) 517, 688, 1531
BccI CCATC 2 cut(s) 854, 929
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BciT130I CCWGG 1 cut(s) 20
BciVI GTATCC 1 cut(s) 687
BcnI CCSGG 1 cut(s) 768
BcoDI GTCTC 1 cut(s) 960
BfaI CTAG 3 cut(s) 399, 1098, 1295
BfmI CTRYAG 1 cut(s) 1032
BfuI GTATCC 1 cut(s) 687
BglII AGATCT 4 cut(s) 181, 405, 708, 943
BisI GCNGC 5 cut(s) 212, 531, 702, 1321, 1545
BlsI GCNGC 5 cut(s) 213, 532, 703, 1322, 1546
Bme1390I CCNGG 2 cut(s) 20, 768
Bme18I GGWCC 2 cut(s) 16, 1332
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 3 cut(s) 16, 381, 1332
BmiI GGNNCC 4 cut(s) 337, 494, 591, 843
BmrFI CCNGG 2 cut(s) 20, 768
BmrI ACTGGG 1 cut(s) 1235
BmsI GCATC 4 cut(s) 22, 752, 1252, 1531
BmuI ACTGGG 1 cut(s) 1235
BpiI GAAGAC 2 cut(s) 1083, 1446
BpmI CTGGAG 4 cut(s) 576, 1221, 1389, 1695
Bpu10I CCTNAGC 1 cut(s) 825
Bpu14I TTCGAA 1 cut(s) 1045
BpuEI CTTGAG 3 cut(s) 221, 361, 1640
BpuMI CCSGG 1 cut(s) 768
BsaBI GATNNNNATC 1 cut(s) 864
BsaJI CCNNGG 3 cut(s) 330, 496, 1344
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 502
Bse1I ACTGG 6 cut(s) 70, 446, 1241, 1334, 1406, 1656
Bse8I GATNNNNATC 1 cut(s) 864
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 330, 496, 1344
BseGI GGATG 2 cut(s) 34, 1660
BseJI GATNNNNATC 1 cut(s) 864
BseLI CCNNNNNNNGG 2 cut(s) 25, 502
BseMII CTCAG 6 cut(s) 33, 570, 719, 816, 945, 1158
BseNI ACTGG 6 cut(s) 70, 446, 1241, 1334, 1406, 1656
BseRI GAGGAG 1 cut(s) 1467
BseXI GCAGC 3 cut(s) 517, 688, 1531
BsgI GTGCAG 1 cut(s) 1524
Bsh1285I CGRYCG 1 cut(s) 814
BshFI GGCC 4 cut(s) 383, 417, 984, 1320
BsiEI CGRYCG 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 1576
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 2 cut(s) 352, 768
BslFI GGGAC 1 cut(s) 1162
BslI CCNNNNNNNGG 2 cut(s) 25, 502
BsmAI GTCTC 1 cut(s) 960
BsmFI GGGAC 1 cut(s) 1162
BsmI GAATGC 1 cut(s) 1399
BsnI GGCC 4 cut(s) 383, 417, 984, 1320
BsoBI CYCGRG 1 cut(s) 331
Bsp119I TTCGAA 1 cut(s) 1045
Bsp1286I GDGCHC 1 cut(s) 1576
BspACI CCGC 3 cut(s) 211, 443, 1321
BspANI GGCC 4 cut(s) 383, 417, 984, 1320
BspCNI CTCAG 6 cut(s) 34, 571, 718, 817, 946, 1159
BspLI GGNNCC 4 cut(s) 337, 494, 591, 843
BspPI GGATC 7 cut(s) 53, 758, 836, 849, 873, 1128, 1487
BspT104I TTCGAA 1 cut(s) 1045
BsrBI CCGCTC 1 cut(s) 211
BsrI ACTGG 6 cut(s) 70, 446, 1241, 1334, 1406, 1656
BssECI CCNNGG 3 cut(s) 330, 496, 1344
BssNAI GTATAC 1 cut(s) 121
BssT1I CCWWGG 2 cut(s) 496, 1344
Bst1107I GTATAC 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 4 cut(s) 81, 563, 976, 1502
Bst6I CTCTTC 1 cut(s) 600
BstBI TTCGAA 1 cut(s) 1045
BstC8I GCNNGC 3 cut(s) 741, 822, 1351
BstDEI CTNAG 8 cut(s) 42, 409, 520, 579, 705, 825, 954, 1167
BstEII GGTNACC 1 cut(s) 664
BstF5I GGATG 2 cut(s) 34, 1660
BstHHI GCGC 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 960
BstMCI CGRYCG 1 cut(s) 814
BstMWI GCNNNNNNNGC 2 cut(s) 442, 554
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 3 cut(s) 649, 1353, 1399
BstPI GGTNACC 1 cut(s) 664
BstSCI CCNGG 2 cut(s) 18, 766
BstSFI CTRYAG 1 cut(s) 1032
BstV1I GCAGC 3 cut(s) 517, 688, 1531
BstV2I GAAGAC 2 cut(s) 1083, 1446
BstX2I RGATCY 7 cut(s) 181, 405, 708, 763, 841, 943, 1120
BstYI RGATCY 7 cut(s) 181, 405, 708, 763, 841, 943, 1120
BstZ17I GTATAC 1 cut(s) 121
BsuI GTATCC 1 cut(s) 687
BsuRI GGCC 4 cut(s) 383, 417, 984, 1320
BtsCI GGATG 2 cut(s) 34, 1660
BtsI GCAGTG 1 cut(s) 1080
BtsIMutI CAGTG 5 cut(s) 568, 1080, 1271, 1373, 1413
Cac8I GCNNGC 3 cut(s) 741, 822, 1351
CaiI CAGNNNCTG 1 cut(s) 1247
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 3 cut(s) 16, 381, 1332
Csp6I GTAC 3 cut(s) 573, 693, 918
CviAII CATG 8 cut(s) 296, 437, 646, 1350, 1382, 1396, 1673, 1700
CviQI GTAC 3 cut(s) 573, 693, 918
DdeI CTNAG 8 cut(s) 42, 409, 520, 579, 705, 825, 954, 1167
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
Ecl136II GAGCTC 1 cut(s) 1574
Eco130I CCWWGG 2 cut(s) 496, 1344
Eco147I AGGCCT 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 1576
Eco32I GATATC 2 cut(s) 289, 1686
Eco47I GGWCC 2 cut(s) 16, 1332
Eco53kI GAGCTC 1 cut(s) 1574
Eco57I CTGAAG 5 cut(s) 57, 219, 266, 1299, 1397
Eco88I CYCGRG 1 cut(s) 331
Eco91I GGTNACC 1 cut(s) 664
EcoICRI GAGCTC 1 cut(s) 1574
EcoO109I RGGNCCY 1 cut(s) 381
EcoO65I GGTNACC 1 cut(s) 664
EcoRII CCWGG 1 cut(s) 18
EcoRV GATATC 2 cut(s) 289, 1686
EcoT14I CCWWGG 2 cut(s) 496, 1344
EcoT22I ATGCAT 2 cut(s) 797, 1401
EcoT38I GRGCYC 1 cut(s) 1576
ErhI CCWWGG 2 cut(s) 496, 1344
FaeI CATG 8 cut(s) 299, 440, 649, 1353, 1385, 1399, 1676, 1703
FaqI GGGAC 1 cut(s) 1162
FatI CATG 8 cut(s) 295, 436, 645, 1349, 1381, 1395, 1672, 1699
FauI CCCGC 1 cut(s) 450
FblI GTMKAC 2 cut(s) 120, 627
Fnu4HI GCNGC 5 cut(s) 212, 531, 702, 1321, 1545
FokI GGATG 2 cut(s) 41, 1667
FriOI GRGCYC 1 cut(s) 1576
Fsp4HI GCNGC 5 cut(s) 212, 531, 702, 1321, 1545
FspBI CTAG 3 cut(s) 399, 1098, 1295
FspI TGCGCA 1 cut(s) 191
GlaI GCGC 1 cut(s) 191
GluI GCNGC 5 cut(s) 212, 531, 702, 1321, 1545
GsuI CTGGAG 4 cut(s) 576, 1221, 1389, 1695
HaeIII GGCC 4 cut(s) 383, 417, 984, 1320
HapII CCGG 2 cut(s) 352, 768
HhaI GCGC 1 cut(s) 192
Hin1II CATG 8 cut(s) 299, 440, 649, 1353, 1385, 1399, 1676, 1703
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 2 cut(s) 628, 1227
HindII GTYRAC 2 cut(s) 628, 1227
HinfI GANTC 8 cut(s) 163, 241, 1028, 1163, 1171, 1337, 1412, 1624
HpaII CCGG 2 cut(s) 352, 768
HphI GGTGA 7 cut(s) 319, 446, 512, 517, 527, 676, 1085
Hpy166II GTNNAC 4 cut(s) 121, 628, 693, 1227
Hpy8I GTNNAC 4 cut(s) 121, 628, 693, 1227
Hpy99I CGWCG 2 cut(s) 16, 53
HpyAV CCTTC 7 cut(s) 17, 137, 407, 428, 908, 1323, 1720
HpyCH4III ACNGT 4 cut(s) 81, 563, 976, 1502
HpyF10VI GCNNNNNNNGC 2 cut(s) 442, 554
HpyF3I CTNAG 8 cut(s) 42, 409, 520, 579, 705, 825, 954, 1167
Hsp92II CATG 8 cut(s) 299, 440, 649, 1353, 1385, 1399, 1676, 1703
HspAI GCGC 1 cut(s) 190
LmnI GCTCC 3 cut(s) 208, 595, 1571
Lsp1109I GCAGC 3 cut(s) 517, 688, 1531
LweI GCATC 4 cut(s) 22, 752, 1252, 1531
MaeI CTAG 3 cut(s) 399, 1098, 1295
MaeIII GTNAC 5 cut(s) 71, 470, 515, 664, 721
MbiI CCGCTC 1 cut(s) 211
MfeI CAATTG 2 cut(s) 1086, 1146
MflI RGATCY 7 cut(s) 181, 405, 708, 763, 841, 943, 1120
MhlI GDGCHC 1 cut(s) 1576
MlyI GAGTC 3 cut(s) 235, 1157, 1331
MmeI TCCRAC 3 cut(s) 86, 1098, 1359
Mph1103I ATGCAT 2 cut(s) 797, 1401
MroXI GAANNNNTTC 3 cut(s) 417, 876, 1107
MseI TTAA 3 cut(s) 386, 836, 1520
MslI CAYNNNNRTG 2 cut(s) 366, 435
MspI CCGG 2 cut(s) 352, 768
MspR9I CCNGG 2 cut(s) 20, 768
MunI CAATTG 2 cut(s) 1086, 1146
Mva1269I GAATGC 1 cut(s) 1399
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 442, 554
NciI CCSGG 1 cut(s) 768
NlaIII CATG 8 cut(s) 299, 440, 649, 1353, 1385, 1399, 1676, 1703
NlaIV GGNNCC 4 cut(s) 337, 494, 591, 843
NmuCI GTSAC 4 cut(s) 470, 515, 664, 721
NsbI TGCGCA 1 cut(s) 191
NsiI ATGCAT 2 cut(s) 797, 1401
NspI RCATGY 3 cut(s) 649, 1353, 1399
NspV TTCGAA 1 cut(s) 1045
PaeI GCATGC 1 cut(s) 1353
PceI AGGCCT 1 cut(s) 417
PcsI WCGNNNNNNNCGW 1 cut(s) 547
PctI GAATGC 1 cut(s) 1399
PdmI GAANNNNTTC 3 cut(s) 417, 876, 1107
PfeI GAWTC 5 cut(s) 163, 1028, 1171, 1412, 1624
PfoI TCCNGGA 1 cut(s) 766
PkrI GCNGC 5 cut(s) 213, 532, 703, 1322, 1546
Ple19I CGATCG 1 cut(s) 814
PleI GAGTC 3 cut(s) 235, 1157, 1331
PpsI GAGTC 3 cut(s) 235, 1157, 1331
Psp124BI GAGCTC 1 cut(s) 1576
Psp6I CCWGG 1 cut(s) 18
PspEI GGTNACC 1 cut(s) 664
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 4 cut(s) 337, 494, 591, 843
PspPI GGNCC 3 cut(s) 16, 381, 1332
PstNI CAGNNNCTG 1 cut(s) 1247
PsuI RGATCY 7 cut(s) 181, 405, 708, 763, 841, 943, 1120
PvuI CGATCG 1 cut(s) 814
RsaI GTAC 3 cut(s) 574, 694, 919
RsaNI GTAC 3 cut(s) 573, 693, 918
RseI CAYNNNNRTG 2 cut(s) 366, 435
SacI GAGCTC 1 cut(s) 1576
SalI GTCGAC 1 cut(s) 626
SaqAI TTAA 3 cut(s) 386, 836, 1520
SatI GCNGC 5 cut(s) 212, 531, 702, 1321, 1545
Sau96I GGNCC 3 cut(s) 16, 381, 1332
SchI GAGTC 3 cut(s) 235, 1157, 1331
ScrFI CCNGG 2 cut(s) 20, 768
SduI GDGCHC 1 cut(s) 1576
SfaNI GCATC 4 cut(s) 22, 752, 1252, 1531
SfcI CTRYAG 1 cut(s) 1032
SfuI TTCGAA 1 cut(s) 1045
SinI GGWCC 2 cut(s) 16, 1332
SmiMI CAYNNNNRTG 2 cut(s) 366, 435
SmlI CTYRAG 3 cut(s) 236, 340, 1619
SmoI CTYRAG 3 cut(s) 236, 340, 1619
SphI GCATGC 1 cut(s) 1353
SseBI AGGCCT 1 cut(s) 417
SsiI CCGC 3 cut(s) 211, 443, 1321
SspI AATATT 1 cut(s) 259
SspMI CTAG 3 cut(s) 399, 1098, 1295
SstI GAGCTC 1 cut(s) 1576
StuI AGGCCT 1 cut(s) 417
StyD4I CCNGG 2 cut(s) 18, 766
StyI CCWWGG 2 cut(s) 496, 1344
TaaI ACNGT 4 cut(s) 81, 563, 976, 1502
TaqI TCGA 6 cut(s) 51, 627, 1045, 1161, 1465, 1480
TatI WGTACW 1 cut(s) 692
TauI GCSGC 2 cut(s) 214, 1323
TfiI GAWTC 5 cut(s) 163, 1028, 1171, 1412, 1624
Tru1I TTAA 3 cut(s) 386, 836, 1520
Tru9I TTAA 3 cut(s) 386, 836, 1520
TscAI CASTG 5 cut(s) 568, 1087, 1278, 1380, 1413
TseFI GTSAC 4 cut(s) 470, 515, 664, 721
TseI GCWGC 3 cut(s) 530, 701, 1544
Tsp45I GTSAC 4 cut(s) 470, 515, 664, 721
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 5 cut(s) 568, 1087, 1278, 1380, 1413
VpaK11BI GGWCC 2 cut(s) 16, 1332
XceI RCATGY 3 cut(s) 649, 1353, 1399
XmiI GTMKAC 2 cut(s) 120, 627
XmnI GAANNNNTTC 3 cut(s) 417, 876, 1107
XspI CTAG 3 cut(s) 399, 1098, 1295
Zsp2I ATGCAT 2 cut(s) 797, 1401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.