AT3G48490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016677
Physical Location & Seq
Forward (+)
17961266 .. 17962014
749 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48490.1

Sequence Viewer

Length: 363 bp
ATGTTTGGGAGGCTGAGACCACCGCCGTCGCCGCCGGATTGTCTGGAGAGATATCCGGCGAAGATCATCAAAGACGATCCTCTCTCCGTCTACGAGTCAACACTGTTGAAACTTAAGCAAGGGTCAACAAGACAGGACACTACTTCATCAGAAACAGAAGGTGAAGAGAATCTGTCATCAACATCATCGTCTCATGTCTTGTCTTCGGATACACAATTAGGAGACACTCATGATGCAATGGCTATAGACTCGTGTGAAAGCTCGAAACAGATAAAGAGCAAGAACCCATCAGTACTATCCATGTTTAGCAAGTACAAGAATCAAGCTCAAGCACGAAACATGAAGACAGAGACTCAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.3

Weight (kDa)

5.71

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016677)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48490
fragaria_vesca FvH4_5g07590
malus_domestica MD06G1149100.v1.1 MD14G1163000.v1.1
prunus_persica Prupe.5G156300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0190901
rosa_laevigata RLG00000004487
rosa_multiflora Rmu_sc0004443.1_g000020
rosa_samantha Rh1BG013800 Rh7AG114600 Rh7BG117000 Rh7CG120100 Rh7DG118400
rosa_wichuraiana Rw7G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AciI CCGC 2 cut(s) 23, 32
AclWI GGATC 1 cut(s) 71
AfaI GTAC 2 cut(s) 294, 314
AflII CTTAAG 1 cut(s) 113
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 2 cut(s) 261, 326
AluI AGCT 2 cut(s) 261, 326
Alw26I GTCTC 4 cut(s) 10, 195, 216, 344
AlwI GGATC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 173
BauI CACGAG 1 cut(s) 250
BbsI GAAGAC 2 cut(s) 195, 350
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 10
BciVI GTATCC 1 cut(s) 202
BcoDI GTCTC 4 cut(s) 10, 195, 216, 344
BfmI CTRYAG 1 cut(s) 243
BfrI CTTAAG 1 cut(s) 113
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BmcAI AGTACT 1 cut(s) 294
BmsI GCATC 1 cut(s) 223
BpiI GAAGAC 2 cut(s) 195, 350
BpmI CTGGAG 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 243
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 5
BsiSI CCGG 2 cut(s) 35, 56
BsmAI GTCTC 4 cut(s) 10, 195, 216, 344
BsmBI CGTCTC 1 cut(s) 195
Bso31I GGTCTC 1 cut(s) 10
Bsp143I GATC 2 cut(s) 63, 76
BspACI CCGC 2 cut(s) 23, 32
BspCNI CTCAG 1 cut(s) 6
BspHI TCATGA 1 cut(s) 229
BspPI GGATC 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 113
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 243
BssMI GATC 2 cut(s) 63, 76
BssSI CACGAG 1 cut(s) 250
Bst2BI CACGAG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 159
BstAFI CTTAAG 1 cut(s) 113
BstDEI CTNAG 2 cut(s) 14, 354
BstKTI GATC 2 cut(s) 66, 79
BstMAI GTCTC 4 cut(s) 10, 195, 216, 344
BstMBI GATC 2 cut(s) 63, 76
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 243
BstV2I GAAGAC 2 cut(s) 195, 350
BsuI GTATCC 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 101
CciI TCATGA 1 cut(s) 229
Csp6I GTAC 2 cut(s) 293, 313
CviAII CATG 4 cut(s) 194, 230, 301, 340
CviJI RGCY 4 cut(s) 13, 242, 261, 326
CviKI_1 RGCY 4 cut(s) 13, 242, 261, 326
CviQI GTAC 2 cut(s) 293, 313
DdeI CTNAG 2 cut(s) 14, 354
DpnI GATC 2 cut(s) 65, 78
DpnII GATC 2 cut(s) 63, 76
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 10
Eco32I GATATC 1 cut(s) 53
EcoRV GATATC 1 cut(s) 53
Esp3I CGTCTC 1 cut(s) 195
FaeI CATG 4 cut(s) 197, 233, 304, 343
FaiI YATR 5 cut(s) 195, 231, 245, 302, 341
FatI CATG 4 cut(s) 193, 229, 300, 339
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 32
GsuI CTGGAG 1 cut(s) 65
HapII CCGG 2 cut(s) 35, 56
Hin1II CATG 4 cut(s) 197, 233, 304, 343
HincII GTYRAC 2 cut(s) 99, 126
HindII GTYRAC 2 cut(s) 99, 126
HinfI GANTC 5 cut(s) 95, 169, 248, 319, 352
HpaII CCGG 2 cut(s) 35, 56
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 3 cut(s) 91, 99, 126
Hpy188I TCNGA 2 cut(s) 151, 208
Hpy188III TCNNGA 3 cut(s) 44, 230, 356
Hpy8I GTNNAC 3 cut(s) 91, 99, 126
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 14, 354
Hsp92II CATG 4 cut(s) 197, 233, 304, 343
Kzo9I GATC 2 cut(s) 63, 76
LpnPI CCDG 5 cut(s) 29, 48, 69, 119, 341
LweI GCATC 1 cut(s) 223
MalI GATC 2 cut(s) 65, 78
MboI GATC 2 cut(s) 63, 76
MboII GAAGA 4 cut(s) 73, 176, 195, 355
MluCI AATT 1 cut(s) 215
MlyI GAGTC 3 cut(s) 104, 242, 346
MnlI CCTC 2 cut(s) 3, 90
MseI TTAA 1 cut(s) 114
MspCI CTTAAG 1 cut(s) 113
MspI CCGG 2 cut(s) 35, 56
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 2 cut(s) 63, 76
NlaIII CATG 4 cut(s) 197, 233, 304, 343
PagI TCATGA 1 cut(s) 229
PfeI GAWTC 2 cut(s) 169, 319
PkrI GCNGC 1 cut(s) 33
PleI GAGTC 3 cut(s) 103, 242, 346
PpsI GAGTC 3 cut(s) 103, 242, 346
RsaI GTAC 2 cut(s) 294, 314
RsaNI GTAC 2 cut(s) 293, 313
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 2 cut(s) 63, 76
ScaI AGTACT 1 cut(s) 294
SchI GAGTC 3 cut(s) 104, 242, 346
SetI ASST 3 cut(s) 163, 263, 328
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 243
SmlI CTYRAG 2 cut(s) 113, 327
SmoI CTYRAG 2 cut(s) 113, 327
Sse9I AATT 1 cut(s) 215
SsiI CCGC 2 cut(s) 23, 32
TaaI ACNGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 263
TasI AATT 1 cut(s) 215
TatI WGTACW 2 cut(s) 292, 312
TauI GCSGC 1 cut(s) 34
TfiI GAWTC 2 cut(s) 169, 319
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 108
TspDTI ATGAA 2 cut(s) 135, 356
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 1 cut(s) 108
Vha464I CTTAAG 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 90
ZrmI AGTACT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.