Prupe.5G156300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016677
Physical Location & Seq
Reverse (-)
13936469 .. 13938091
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G156300.1

Sequence Viewer

Length: 591 bp
ATGTTTGGGAAAGTAAGAGCGTCTTCTTGTCCGGCCGAGAGCCTGGAGAGACCGCCGTCCAAGATTCTCAAAGACGATTCTCTCTCCATCTACGAGGCTACACTTATGAAGCTTAAATTGGGTTCTAAACGCAATTTGAGTCCATGCTCCAATGAGGTTGTAGGGGAGATATATAACGGTTCTACTTCAAGCTCTTCCAATTCGGAGCCAATAAAGATAGATTTGAACTGTGCTTCTGCAGCGGCTTCTCGGGGTCATACAGAGGTGGCCAGCTCTCCCCAGGAGCAGGAGGAGTTTATGACATTAGACACAGATTGTTCTTCAGTAACAAGTTCTACAAGTTCTACTGATTGCCATTCTTTGGGTACCTCAAAACAGCAACGTAGTACAAACGTTTCAGTTCTCTACCTGTTTTCTAAATTTAAGAGAGCTCAAGAGGATATCTGCTCATCCTCTGGAGATGCAATGACAAAAGAGAGTGCTAGTATTTCTCCAAGTTGTAGCGGTTGCCAATCTCTTAACAGCACAGAACAACGTTTGGAAATGGAATGTGTCAACTCTTTACCTGCTAGTCACATATGCATGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

20.96

Weight (kDa)

5.26

Isoelectric Point (pI)

63.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016677)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48490
fragaria_vesca FvH4_5g07590
malus_domestica MD06G1149100.v1.1 MD14G1163000.v1.1
prunus_persica Prupe.5G156300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0190901
rosa_laevigata RLG00000004487
rosa_multiflora Rmu_sc0004443.1_g000020
rosa_samantha Rh1BG013800 Rh7AG114600 Rh7BG117000 Rh7CG120100 Rh7DG118400
rosa_wichuraiana Rw7G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 574
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 365
AccB7I CCANNNNNTGG 1 cut(s) 361
AciI CCGC 3 cut(s) 53, 242, 504
AclI AACGTT 2 cut(s) 393, 535
AcoI YGGCCR 2 cut(s) 33, 267
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 2 cut(s) 367, 388
AfiI CCNNNNNNNGG 2 cut(s) 286, 361
AgsI TTSAA 2 cut(s) 189, 226
AjnI CCWGG 2 cut(s) 42, 279
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 4 cut(s) 112, 192, 273, 431
AluI AGCT 4 cut(s) 112, 192, 273, 431
Alw21I GWGCWC 1 cut(s) 433
Alw26I GTCTC 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 249
AoxI GGCC 2 cut(s) 33, 267
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 419
Asp718I GGTACC 1 cut(s) 365
AvaI CYCGRG 1 cut(s) 249
BalI TGGCCA 1 cut(s) 269
BanI GGYRCC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 433
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 433
BbvI GCAGC 1 cut(s) 251
BccI CCATC 1 cut(s) 95
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 2 cut(s) 44, 281
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 2 cut(s) 483, 570
BfmI CTRYAG 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 574
BisI GCNGC 2 cut(s) 240, 243
BlsI GCNGC 2 cut(s) 241, 244
Bme1390I CCNGG 2 cut(s) 44, 281
BmeT110I CYCGRG 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 207, 367
BmrFI CCNGG 2 cut(s) 44, 281
BmsI GCATC 1 cut(s) 451
BoxI GACNNNNGTC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 15
BpmI CTGGAG 2 cut(s) 65, 477
BpuEI CTTGAG 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 361
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 2 cut(s) 44, 281
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 449
BseLI CCNNNNNNNGG 2 cut(s) 286, 361
BseMI GCAATG 1 cut(s) 471
BseRI GAGGAG 1 cut(s) 305
BseX3I CGGCCG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 251
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 2 cut(s) 35, 269
BshNI GGYRCC 1 cut(s) 365
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 433
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 286, 361
BsmAI GTCTC 1 cut(s) 43
BsnI GGCC 2 cut(s) 35, 269
Bso31I GGTCTC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 433
BspACI CCGC 3 cut(s) 53, 242, 504
BspANI GGCC 2 cut(s) 35, 269
BspLI GGNNCC 2 cut(s) 207, 367
BspMAI CTGCAG 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 574
BspQI GCTCTTC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 365
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 471
BssECI CCNNGG 1 cut(s) 279
Bst2UI CCWGG 2 cut(s) 44, 281
Bst4CI ACNGT 2 cut(s) 179, 230
Bst6I CTCTTC 1 cut(s) 199
BstC8I GCNNGC 2 cut(s) 271, 584
BstF5I GGATG 1 cut(s) 449
BstMAI GTCTC 1 cut(s) 43
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 2 cut(s) 44, 281
BstNSI RCATGY 1 cut(s) 586
BstPAI GACNNNNGTC 1 cut(s) 55
BstSCI CCNGG 2 cut(s) 42, 279
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 15
BstZI CGGCCG 1 cut(s) 33
BsuRI GGCC 2 cut(s) 35, 269
BtsCI GGATG 1 cut(s) 449
BveI ACCTGC 1 cut(s) 574
Cac8I GCNNGC 2 cut(s) 271, 584
CseI GACGC 1 cut(s) 9
Csp6I GTAC 2 cut(s) 366, 387
CviAII CATG 2 cut(s) 144, 583
CviQI GTAC 2 cut(s) 366, 387
EaeI YGGCCR 2 cut(s) 33, 267
EagI CGGCCG 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 431
EclXI CGGCCG 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 433
Eco31I GGTCTC 1 cut(s) 43
Eco32I GATATC 1 cut(s) 442
Eco52I CGGCCG 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 249
EcoICRI GAGCTC 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 42, 279
EcoRV GATATC 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 584
EcoT38I GRGCYC 1 cut(s) 433
FaeI CATG 2 cut(s) 147, 586
FaiI YATR 9 cut(s) 107, 145, 172, 174, 258, 299, 578, 580, 584
FalI AAGNNNNNCTT 2 cut(s) 7, 39
FatI CATG 2 cut(s) 143, 582
FauNDI CATATG 1 cut(s) 578
Fnu4HI GCNGC 2 cut(s) 240, 243
FokI GGATG 1 cut(s) 436
FriOI GRGCYC 1 cut(s) 433
Fsp4HI GCNGC 2 cut(s) 240, 243
FspBI CTAG 2 cut(s) 483, 570
GluI GCNGC 2 cut(s) 240, 243
GsuI CTGGAG 2 cut(s) 65, 477
HaeIII GGCC 2 cut(s) 35, 269
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 9
Hin1II CATG 2 cut(s) 147, 586
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 64, 77, 139
HpaII CCGG 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 556
Hpy188I TCNGA 2 cut(s) 205, 590
Hpy188III TCNNGA 2 cut(s) 434, 456
Hpy8I GTNNAC 1 cut(s) 556
HpyCH4III ACNGT 2 cut(s) 179, 230
HpyCH4IV ACGT 3 cut(s) 382, 393, 535
HpyCH4V TGCA 3 cut(s) 239, 464, 582
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpySE526I ACGT 3 cut(s) 382, 393, 535
Hsp92II CATG 2 cut(s) 147, 586
KpnI GGTACC 1 cut(s) 369
LguI GCTCTTC 1 cut(s) 199
LmnI GCTCC 3 cut(s) 152, 205, 283
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 451
MaeI CTAG 2 cut(s) 483, 570
MaeII ACGT 3 cut(s) 382, 393, 535
MaeIII GTNAC 2 cut(s) 325, 572
MboII GAAGA 3 cut(s) 15, 186, 312
MhlI GDGCHC 1 cut(s) 433
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 4 cut(s) 116, 133, 199, 419
MluNI TGGCCA 1 cut(s) 269
MlyI GAGTC 1 cut(s) 148
MnlI CCTC 7 cut(s) 88, 148, 256, 283, 379, 430, 463
Mox20I TGGCCA 1 cut(s) 269
Mph1103I ATGCAT 1 cut(s) 584
MscI TGGCCA 1 cut(s) 269
MseI TTAA 3 cut(s) 114, 423, 519
MslI CAYNNNNRTG 1 cut(s) 581
Msp20I TGGCCA 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 2 cut(s) 44, 281
MvaI CCWGG 2 cut(s) 44, 281
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeI CATATG 1 cut(s) 578
NlaIII CATG 2 cut(s) 147, 586
NlaIV GGNNCC 2 cut(s) 207, 367
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 572
NsiI ATGCAT 1 cut(s) 584
NspI RCATGY 1 cut(s) 586
PaeI GCATGC 1 cut(s) 586
PciSI GCTCTTC 1 cut(s) 199
PfeI GAWTC 2 cut(s) 64, 77
PflMI CCANNNNNTGG 1 cut(s) 361
PkrI GCNGC 2 cut(s) 241, 244
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
PshAI GACNNNNGTC 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 433
Psp1406I AACGTT 2 cut(s) 393, 535
Psp6I CCWGG 2 cut(s) 42, 279
PspGI CCWGG 2 cut(s) 42, 279
PspN4I GGNNCC 2 cut(s) 207, 367
PstI CTGCAG 1 cut(s) 241
RsaI GTAC 2 cut(s) 367, 388
RsaNI GTAC 2 cut(s) 366, 387
RseI CAYNNNNRTG 1 cut(s) 581
SacI GAGCTC 1 cut(s) 433
SapI GCTCTTC 1 cut(s) 199
SaqAI TTAA 3 cut(s) 114, 423, 519
SatI GCNGC 2 cut(s) 240, 243
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 2 cut(s) 44, 281
SduI GDGCHC 1 cut(s) 433
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
SphI GCATGC 1 cut(s) 586
Sse9I AATT 4 cut(s) 116, 133, 199, 419
SsiI CCGC 3 cut(s) 53, 242, 504
SspMI CTAG 2 cut(s) 483, 570
SstI GAGCTC 1 cut(s) 433
StyD4I CCNGG 2 cut(s) 42, 279
TaaI ACNGT 2 cut(s) 179, 230
TaiI ACGT 3 cut(s) 385, 396, 538
TasI AATT 4 cut(s) 116, 133, 199, 419
TatI WGTACW 1 cut(s) 386
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 2 cut(s) 64, 77
Tru1I TTAA 3 cut(s) 114, 423, 519
Tru9I TTAA 3 cut(s) 114, 423, 519
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 1 cut(s) 122
Van91I CCANNNNNTGG 1 cut(s) 361
XapI RAATTY 1 cut(s) 419
XceI RCATGY 1 cut(s) 586
XspI CTAG 2 cut(s) 483, 570
Zsp2I ATGCAT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.