Rh1BG013800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
2069536 .. 2071846
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG013800.1

Sequence Viewer

Length: 342 bp
ATGTTTGGGAGAGTAAGAGCCTCGTCCCGTCCGGCCGACAGCTTGGAGAGACAGCCTTCCAAGATTTTCAAGGACGATTCTCTCTCCATCTACGAGGCTACACTGATGAAGCTTAAATTGGGTTCAAAACGTAATCTATGTCCGTGCTCTAATGAGGTAGGGGAGATAGATGCCGGTTCTAATTCAAGTTCTCCTGACTCGGAGCCAATGAACATAGAGGTGAACTGTGCTTCCTCGGGAACTTCAAGCTCTCCGGATTTTGCTTGCCAGCTCCCCACAGGAGGAGGCTATGACATTAGATACAGATTGTTCTTCAGAAAGAAGTTCAATAAGTTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.47

Weight (kDa)

8.38

Isoelectric Point (pI)

57.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016677)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48490
fragaria_vesca FvH4_5g07590
malus_domestica MD06G1149100.v1.1 MD14G1163000.v1.1
prunus_persica Prupe.5G156300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0190901
rosa_laevigata RLG00000004487
rosa_multiflora Rmu_sc0004443.1_g000020
rosa_samantha Rh1BG013800 Rh7AG114600 Rh7BG117000 Rh7CG120100 Rh7DG118400
rosa_wichuraiana Rw7G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 253
AcoI YGGCCR 1 cut(s) 33
AcuI CTGAAG 1 cut(s) 298
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 5 cut(s) 70, 126, 186, 246, 328
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 4 cut(s) 42, 112, 249, 271
AluI AGCT 4 cut(s) 42, 112, 249, 271
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 235
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 1 cut(s) 33
AsuHPI GGTGA 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 149
BccI CCATC 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 204
BmsI GCATC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse118I RCCGGY 1 cut(s) 173
BseAI TCCGGA 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 297
BseX3I CGGCCG 1 cut(s) 33
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 35
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 3 cut(s) 32, 174, 254
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 10
BsnI GGCC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 149
Bsp13I TCCGGA 1 cut(s) 253
BspANI GGCC 1 cut(s) 35
BspEI TCCGGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 227
BstC8I GCNNGC 2 cut(s) 265, 269
BstMAI GTCTC 1 cut(s) 43
BstMCI CGRYCG 1 cut(s) 36
BstZI CGGCCG 1 cut(s) 33
BsuRI GGCC 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 2 cut(s) 265, 269
Cfr10I RCCGGY 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 33
EagI CGGCCG 1 cut(s) 33
EclXI CGGCCG 1 cut(s) 33
Eco52I CGGCCG 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 298
Eco88I CYCGRG 1 cut(s) 235
FaiI YATR 3 cut(s) 139, 215, 291
FaqI GGGAC 1 cut(s) 10
HaeIII GGCC 1 cut(s) 35
HapII CCGG 3 cut(s) 32, 174, 254
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 2 cut(s) 77, 197
HpaII CCGG 3 cut(s) 32, 174, 254
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 2 cut(s) 202, 317
Hpy188III TCNNGA 3 cut(s) 194, 237, 254
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 130
HpySE526I ACGT 1 cut(s) 130
Kpn2I TCCGGA 1 cut(s) 253
LmnI GCTCC 2 cut(s) 202, 276
LpnPI CCDG 6 cut(s) 45, 187, 207, 264, 267, 281
LweI GCATC 1 cut(s) 160
MaeII ACGT 1 cut(s) 130
MboII GAAGA 1 cut(s) 304
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 2 cut(s) 116, 181
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 7 cut(s) 31, 88, 148, 211, 244, 275, 278
MroI TCCGGA 1 cut(s) 253
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 3 cut(s) 32, 174, 254
NlaIV GGNNCC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 77
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 204
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 114
SchI GAGTC 1 cut(s) 191
SduI GDGCHC 1 cut(s) 149
SetI ASST 7 cut(s) 44, 114, 133, 159, 222, 251, 273
SfaNI GCATC 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 2 cut(s) 116, 181
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 1 cut(s) 133
TaqI TCGA 1 cut(s) 336
TasI AATT 2 cut(s) 116, 181
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 108
TspDTI ATGAA 2 cut(s) 122, 224
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.