Rw7G010000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0016677
Physical Location & Seq
Reverse (-)
9235187 .. 9236410
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G010000.1

Sequence Viewer

Length: 531 bp
ATGTTTGGGAGAGTAAGAGCCTCGTCCTCTCCGGCCGACAGCTTGGAGAGGCCGCCTTCCAAGATTTTCAAGGACGATACTCTCTCCATCTACGAGGCTACACTGATGAAGCTTAAATTGGGTTCAAAACGTAATCTAAGTCTGTGCTCTAATGAGGTAGGGGAGATAGATGCCGGTTCTAATTCAAGTTCTCCTGACTCGGAGCCAATGAACATAGAGGTGAACTGTGAGGAGGTTGTCACATTAGATACAGATTGTTCTTCAGAAACAAGTTCAATAAGTTCGAGTGATTGTAATTCTGCGGGCACCTCAAAGCAGCCAAGGAGTACAGAGGTTTCTGTTCTCTACCTCTTTTCTAAATTTAGGAGAGCTCACGATGCAATCAGCTCGTCCTCGGGGGAGGCAATGACAATTGATAGCGTTGGTATTTCTCCTAGTTCTAGTGGTTCTCGATCTGTTAACAACACAGAACAACAGTCGGAACAGGAATGCATCAGCTCTTTACCTGCCACCGAGATACATATGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

18.79

Weight (kDa)

4.63

Isoelectric Point (pI)

73.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016677)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48490
fragaria_vesca FvH4_5g07590
malus_domestica MD06G1149100.v1.1 MD14G1163000.v1.1
prunus_persica Prupe.5G156300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0190901
rosa_laevigata RLG00000004487
rosa_multiflora Rmu_sc0004443.1_g000020
rosa_samantha Rh1BG013800 Rh7AG114600 Rh7BG117000 Rh7CG120100 Rh7DG118400
rosa_wichuraiana Rw7G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 514
AccB1I GGYRCC 1 cut(s) 305
AciI CCGC 2 cut(s) 53, 302
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 1 cut(s) 328
AgsI TTSAA 4 cut(s) 70, 126, 186, 276
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 5 cut(s) 42, 112, 371, 387, 498
AluI AGCT 5 cut(s) 42, 112, 371, 387, 498
Alw21I GWGCWC 2 cut(s) 149, 373
Ama87I CYCGRG 1 cut(s) 394
AoxI GGCC 2 cut(s) 33, 50
ApeKI GCWGC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 359
AsuHPI GGTGA 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 394
BaeGI GKGCMC 1 cut(s) 308
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 373
Bbv12I GWGCWC 2 cut(s) 149, 373
BbvI GCAGC 1 cut(s) 328
BccI CCATC 1 cut(s) 95
BcgI CGANNNNNNTGC 2 cut(s) 369, 403
BfaI CTAG 2 cut(s) 435, 441
BfuAI ACCTGC 1 cut(s) 514
BisI GCNGC 2 cut(s) 53, 317
BlsI GCNGC 2 cut(s) 54, 318
BmeT110I CYCGRG 1 cut(s) 394
BmiI GGNNCC 2 cut(s) 204, 307
BmsI GCATC 3 cut(s) 160, 367, 501
BsaJI CCNNGG 2 cut(s) 320, 393
Bse118I RCCGGY 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 320, 393
BseMI GCAATG 1 cut(s) 411
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 308
BseX3I CGGCCG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 328
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 2 cut(s) 35, 52
BshNI GGYRCC 1 cut(s) 305
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 2 cut(s) 149, 373
BsiHKCI CYCGRG 1 cut(s) 394
BsiSI CCGG 2 cut(s) 32, 174
BsmI GAATGC 1 cut(s) 494
BsnI GGCC 2 cut(s) 35, 52
BsoBI CYCGRG 1 cut(s) 394
Bsp1286I GDGCHC 3 cut(s) 149, 308, 373
Bsp143I GATC 1 cut(s) 452
BspACI CCGC 2 cut(s) 53, 302
BspANI GGCC 2 cut(s) 35, 52
BspLI GGNNCC 2 cut(s) 204, 307
BspMI ACCTGC 1 cut(s) 514
BspT107I GGYRCC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 411
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 320, 393
BssMI GATC 1 cut(s) 452
BssT1I CCWWGG 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 227, 477
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 137
BstKTI GATC 1 cut(s) 455
BstMBI GATC 1 cut(s) 452
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 328
BstZI CGGCCG 1 cut(s) 33
BsuRI GGCC 2 cut(s) 35, 52
BtsIMutI CAGTG 1 cut(s) 101
BveI ACCTGC 1 cut(s) 514
Cac8I GCNNGC 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 173
Csp6I GTAC 1 cut(s) 327
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 1 cut(s) 137
DpnI GATC 1 cut(s) 454
DpnII GATC 1 cut(s) 452
EaeI YGGCCR 1 cut(s) 33
EagI CGGCCG 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 371
EclXI CGGCCG 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 373
Eco52I CGGCCG 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 320
EcoT22I ATGCAT 1 cut(s) 494
EcoT38I GRGCYC 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 320
FaiI YATR 3 cut(s) 215, 522, 524
FauI CCCGC 1 cut(s) 295
FauNDI CATATG 1 cut(s) 522
Fnu4HI GCNGC 2 cut(s) 53, 317
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 2 cut(s) 53, 317
FspBI CTAG 2 cut(s) 435, 441
GluI GCNGC 2 cut(s) 53, 317
HaeIII GGCC 2 cut(s) 35, 52
HapII CCGG 2 cut(s) 32, 174
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 1 cut(s) 197
HpaI GTTAAC 1 cut(s) 460
HpaII CCGG 2 cut(s) 32, 174
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 2 cut(s) 223, 460
Hpy188I TCNGA 3 cut(s) 202, 265, 481
Hpy188III TCNNGA 3 cut(s) 194, 374, 450
Hpy8I GTNNAC 2 cut(s) 223, 460
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 2 cut(s) 227, 477
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 380, 492
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 1 cut(s) 130
KspAI GTTAAC 1 cut(s) 460
Kzo9I GATC 1 cut(s) 452
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 5 cut(s) 45, 187, 207, 470, 519
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 3 cut(s) 160, 367, 501
MaeI CTAG 2 cut(s) 435, 441
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 454
MboI GATC 1 cut(s) 452
MboII GAAGA 1 cut(s) 252
MfeI CAATTG 1 cut(s) 411
MhlI GDGCHC 3 cut(s) 149, 308, 373
MluCI AATT 5 cut(s) 116, 181, 295, 359, 411
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 459
Mph1103I ATGCAT 1 cut(s) 494
MseI TTAA 2 cut(s) 114, 459
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 2 cut(s) 32, 174
MunI CAATTG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 494
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeI CATATG 1 cut(s) 522
NdeII GATC 1 cut(s) 452
NlaIV GGNNCC 2 cut(s) 204, 307
NmuCI GTSAC 1 cut(s) 238
NsiI ATGCAT 1 cut(s) 494
PctI GAATGC 1 cut(s) 494
PkrI GCNGC 2 cut(s) 54, 318
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 373
PspN4I GGNNCC 2 cut(s) 204, 307
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
RseI CAYNNNNRTG 1 cut(s) 218
SacI GAGCTC 1 cut(s) 373
SaqAI TTAA 2 cut(s) 114, 459
SatI GCNGC 2 cut(s) 53, 317
Sau3AI GATC 1 cut(s) 452
SchI GAGTC 1 cut(s) 191
SduI GDGCHC 3 cut(s) 149, 308, 373
SfaNI GCATC 3 cut(s) 160, 367, 501
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 5 cut(s) 116, 181, 295, 359, 411
SsiI CCGC 2 cut(s) 53, 302
SspMI CTAG 2 cut(s) 435, 441
SstI GAGCTC 1 cut(s) 373
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 2 cut(s) 227, 477
TaiI ACGT 1 cut(s) 133
TaqI TCGA 2 cut(s) 284, 451
TasI AATT 5 cut(s) 116, 181, 295, 359, 411
TatI WGTACW 1 cut(s) 326
TauI GCSGC 1 cut(s) 55
Tru1I TTAA 2 cut(s) 114, 459
Tru9I TTAA 2 cut(s) 114, 459
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 316
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 122, 224
TspRI CASTG 1 cut(s) 108
XapI RAATTY 1 cut(s) 359
XspI CTAG 2 cut(s) 435, 441
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.