FvH4_5g07590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016677
Physical Location & Seq
Forward (+)
4425841 .. 4427830
1990 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07590.t1

Sequence Viewer

Length: 582 bp
ATGTTTGGGAGAGTAAGAGCGTCGTCTATTCCGGCCGAGAGCTTGGAAAGACCGCCCTGCAAGATTTTCAAGGACGATTCTCTCTCCATCTACGAGGTTACACTGATGAAGCTTAAATTGGGTTCAAAACGTAATCTTAGTCCGTGCTCTAATGAGGTAGTGGAGATGGATGCCGGTTCTAATTCAAGTTCTCTTGAGTCGGAGCCAATGAACATAGAGGTGAACTGTGCTTCCTCGGGGACTTCAAGCTCTCCAGATTCGGTTGCCAGCTTCCCACAGGAGGAGGTTATGACATTAGATACAGATTGTTCTTCAGAAAGAAGTTCAGTAAGTTCGAGTGGTTGTGATTCTGCGGGGACCTTGAAACAGCCAAGGAGTACAGAAGTTTCAGTTCTCTACCTCTTCTCTAAATTCAAGAGAGCTCACGATGCAATCAGCTCGTCCTCCAGTGAGGCAATGATAGTAGATAGTGTTGGTGTTTCTCCAAGTTCTAGTGGTTCTCGATCTGTTAACAACACAGAACAACAATCGGAACAGGAATGCATCAGCTCTTTTCCTGCTACTGAGATAGATATGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

20.57

Weight (kDa)

4.55

Isoelectric Point (pI)

76.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016677)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48490
fragaria_vesca FvH4_5g07590
malus_domestica MD06G1149100.v1.1 MD14G1163000.v1.1
prunus_persica Prupe.5G156300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0190901
rosa_laevigata RLG00000004487
rosa_multiflora Rmu_sc0004443.1_g000020
rosa_samantha Rh1BG013800 Rh7AG114600 Rh7BG117000 Rh7CG120100 Rh7DG118400
rosa_wichuraiana Rw7G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 53, 353
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 6 cut(s) 70, 126, 186, 246, 364, 415
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 7 cut(s) 42, 112, 249, 270, 422, 438, 549
AluI AGCT 7 cut(s) 42, 112, 249, 270, 422, 438, 549
Alw21I GWGCWC 2 cut(s) 149, 424
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 1 cut(s) 33
ApoI RAATTY 1 cut(s) 410
AspS9I GGNCC 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 1 cut(s) 357
BanII GRGCYC 1 cut(s) 424
Bbv12I GWGCWC 2 cut(s) 149, 424
BccI CCATC 2 cut(s) 95, 160
BcgI CGANNNNNNTGC 2 cut(s) 420, 454
BfaI CTAG 1 cut(s) 492
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 2 cut(s) 204, 358
BmsI GCATC 3 cut(s) 160, 418, 552
BpmI CTGGAG 2 cut(s) 237, 430
BpuEI CTTGAG 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 234, 371
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 234, 371
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 555
BseNI ACTGG 1 cut(s) 447
BseRI GAGGAG 1 cut(s) 296
BseX3I CGGCCG 1 cut(s) 33
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 35
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 2 cut(s) 149, 424
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 2 cut(s) 32, 174
BslFI GGGAC 2 cut(s) 253, 370
BslI CCNNNNNNNGG 1 cut(s) 280
BsmFI GGGAC 2 cut(s) 253, 370
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 149, 424
Bsp143I GATC 1 cut(s) 503
BspACI CCGC 2 cut(s) 53, 353
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 556
BspLI GGNNCC 2 cut(s) 204, 358
BsrDI GCAATG 1 cut(s) 462
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 1 cut(s) 447
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 234, 371
BssMI GATC 1 cut(s) 503
BssT1I CCWWGG 1 cut(s) 371
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 137, 564
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 1 cut(s) 506
BstMBI GATC 1 cut(s) 503
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstZI CGGCCG 1 cut(s) 33
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 2 cut(s) 101, 454
Cac8I GCNNGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 357
CseI GACGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 378
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 2 cut(s) 137, 564
DpnI GATC 1 cut(s) 505
DpnII GATC 1 cut(s) 503
EaeI YGGCCR 1 cut(s) 33
EagI CGGCCG 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Ecl136II GAGCTC 1 cut(s) 422
EclXI CGGCCG 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 371
Eco24I GRGCYC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 357
Eco52I CGGCCG 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 371
EcoT22I ATGCAT 1 cut(s) 545
EcoT38I GRGCYC 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 371
FaiI YATR 3 cut(s) 215, 290, 575
FaqI GGGAC 2 cut(s) 253, 370
FauI CCCGC 1 cut(s) 346
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 424
FspBI CTAG 1 cut(s) 492
GsuI CTGGAG 2 cut(s) 237, 430
HaeIII GGCC 1 cut(s) 35
HapII CCGG 2 cut(s) 32, 174
HgaI GACGC 1 cut(s) 9
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 4 cut(s) 77, 197, 257, 347
HpaI GTTAAC 1 cut(s) 511
HpaII CCGG 2 cut(s) 32, 174
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 2 cut(s) 223, 511
Hpy188I TCNGA 3 cut(s) 202, 316, 532
Hpy188III TCNNGA 5 cut(s) 194, 254, 415, 425, 501
Hpy8I GTNNAC 2 cut(s) 223, 511
Hpy99I CGWCG 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 3 cut(s) 60, 431, 543
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 2 cut(s) 137, 564
HpySE526I ACGT 1 cut(s) 130
KspAI GTTAAC 1 cut(s) 511
Kzo9I GATC 1 cut(s) 503
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 9 cut(s) 45, 70, 187, 263, 267, 280, 460, 521, 570
LweI GCATC 3 cut(s) 160, 418, 552
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 505
MboI GATC 1 cut(s) 503
MboII GAAGA 2 cut(s) 303, 394
MhlI GDGCHC 2 cut(s) 149, 424
MluCI AATT 3 cut(s) 116, 181, 410
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 9 cut(s) 88, 148, 211, 244, 274, 277, 410, 445, 454
Mph1103I ATGCAT 1 cut(s) 545
MseI TTAA 2 cut(s) 114, 510
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 2 cut(s) 32, 174
Mva1269I GAATGC 1 cut(s) 545
MwoI GCNNNNNNNGC 1 cut(s) 428
NdeII GATC 1 cut(s) 503
NlaIV GGNNCC 2 cut(s) 204, 358
NmeAIII GCCGAG 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 545
PctI GAATGC 1 cut(s) 545
PfeI GAWTC 3 cut(s) 77, 257, 347
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 424
Psp5II RGGWCCY 1 cut(s) 357
PspN4I GGNNCC 2 cut(s) 204, 358
PspPI GGNCC 1 cut(s) 357
PspPPI RGGWCCY 1 cut(s) 357
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
RseI CAYNNNNRTG 1 cut(s) 218
SacI GAGCTC 1 cut(s) 424
SaqAI TTAA 2 cut(s) 114, 510
Sau3AI GATC 1 cut(s) 503
Sau96I GGNCC 1 cut(s) 357
SchI GAGTC 1 cut(s) 206
SduI GDGCHC 2 cut(s) 149, 424
SfaNI GCATC 3 cut(s) 160, 418, 552
SinI GGWCC 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 3 cut(s) 116, 181, 410
SsiI CCGC 2 cut(s) 53, 353
SspMI CTAG 1 cut(s) 492
SstI GAGCTC 1 cut(s) 424
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 1 cut(s) 133
TaqI TCGA 2 cut(s) 335, 502
TasI AATT 3 cut(s) 116, 181, 410
TatI WGTACW 1 cut(s) 377
TfiI GAWTC 3 cut(s) 77, 257, 347
Tru1I TTAA 2 cut(s) 114, 510
Tru9I TTAA 2 cut(s) 114, 510
TscAI CASTG 2 cut(s) 108, 454
TspDTI ATGAA 2 cut(s) 122, 224
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 2 cut(s) 108, 454
VpaK11BI GGWCC 1 cut(s) 357
XapI RAATTY 1 cut(s) 410
XspI CTAG 1 cut(s) 492
Zsp2I ATGCAT 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.