AT3G48730

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
18049571 .. 18051778
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48730.1

Sequence Viewer

Length: 1419 bp
ATGGCTGCGACGCTTACTGGATCAGGGATTGCTCTAGGGTTTTCGTGCTCCGCAAAGTTCTCTAAGAGAGCTTCTTCGTCGTCCAACCGTCGCTGCATCAAGATGTCGGTTTCGGTAGAGGAGAAGACGAAGAAATTCACTCTTCAGAAATCTGAGGAAGCTTTCAATGCTGCGAAGAACTTAATGCCTGGAGGTGTGAACTCACCTGTACGTGCTTTCAAATCTGTTGGTGGACAACCAGTGGTGATGGATTCTGCAAAGGGCTCACGAATAAGAGACATTGATGGAAATGAATACATTGACTATGTTGGATCTTGGGGACCTGCTATAATTGGTCATGCTGATGATGAGGTTCTTGCTGCTTTGGCTGAGACAATGAAGAAAGGAACAAGCTTTGGTGCTCCTTGTCTCTTAGAGAATGTTCTTGCTGAGATGGTGATTTCAGCTGTTCCAAGTATTGAAATGGTTCGGTTTGTTAACTCCGGTACAGAGGCATGTATGGGTGTGCTACGTCTTGCTCGTGCCTTCACAGGGAAACAAAAGTTCATCAAGTTTGAAGGTTGTTATCATGGTCATGCAAACTCTTTCCTTGTCAAAGCAGGTAGTGGTGTAGCTACTTTGGGTCTACCTGACTCGCCTGGGGTCCCCAAAGCAGCTACTTCAGATACTTTAACAGCTCCATACAATGATATTGCTGCTGTTGAGAAGCTTTTTGAGGCAAACAAAGGAGAGATTGCTGCCATCATTCTTGAACCTGTTGTTGGTAACTCGGGTTTTATTACACCTAAACCAGAGTTCATTGAGGGAATACGCCGGATCACTAAAGACAATGGTGCTCTTCTTATTTTCGATGAAGTCATGACTGGTTTTCGTTTAGCCTATGGTGGAGCTCAAGAATACTTTGGAATCACACCTGACTTAACAACTCTTGGGAAAATCATCGGTGGTGGTCTTCCTGTGGGAGCATACGGTGGAAGAAGAGACATCATGGAAATGGTTGCACCCGCAGGACCGATGTATCAAGCTGGTACGCTAAGTGGTAATCCGTTGGCTATGACAGCGGGTATACACACGCTGAAGCGGTTAAGTCAGCCAGGGACATATGAATACTTAGACAAGATCACAAAAGAGCTTACAAATGGGATACTAGAAGCCGGGAAGAAAACCGGGCATGCGATGTGTGGCGGTTACATAAGCGGGATGTTCGGTTTCTTCTTCACGGAAGGACCCGTCTATGATTTCTCGGATGCAAAGAAGAGTGATACAGAGAAGTTTGGAAAGTTTTTCAGAGGAATGTTGGAAGAAGGTGTCTACTTGGCACCTTCTCAATTCGAGGCCGGTTTTACTAGCTTGGCTCACACTTCAGAAGACATCCAATTCACTATCGCAGCGGCCGAGAAGGTTCTAAGTCGGCTCTAA

Protein Analysis

472

Amino Acids

50.14

Weight (kDa)

7.01

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 80 - 389 5.4e-72 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011111)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 331, 590
AccB1I GGYRCC 1 cut(s) 1318
AccI GTMKAC 3 cut(s) 625, 1066, 1311
AciI CCGC 7 cut(s) 51, 1005, 1061, 1081, 1185, 1197, 1391
AclWI GGATC 3 cut(s) 28, 319, 824
AcoI YGGCCR 1 cut(s) 1392
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 4 cut(s) 128, 645, 1097, 1347
AfaI GTAC 3 cut(s) 210, 487, 1030
AfiI CCNNNNNNNGG 2 cut(s) 531, 761
AgsI TTSAA 5 cut(s) 166, 220, 461, 557, 752
AjnI CCWGG 3 cut(s) 187, 637, 1093
AjuI GAANNNNNNNTTGG 2 cut(s) 744, 776
Alw21I GWGCWC 4 cut(s) 50, 403, 838, 892
Alw26I GTCTC 4 cut(s) 270, 365, 413, 975
AlwI GGATC 3 cut(s) 28, 319, 824
Ama87I CYCGRG 1 cut(s) 769
AoxI GGCC 2 cut(s) 1335, 1392
ApeKI GCWGC 8 cut(s) 5, 93, 170, 359, 653, 695, 737, 1388
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 2 cut(s) 134, 465
AspS9I GGNCC 4 cut(s) 320, 643, 1010, 1226
AsuC2I CCSGG 2 cut(s) 1156, 1168
AsuHPI GGTGA 3 cut(s) 195, 256, 448
AvaI CYCGRG 1 cut(s) 769
AvaII GGWCC 4 cut(s) 320, 643, 1010, 1226
BaeI ACNNNNGTAYC 2 cut(s) 1001, 1034
BanI GGYRCC 1 cut(s) 1318
BanII GRGCYC 2 cut(s) 266, 892
BauI CACGAG 1 cut(s) 519
BbsI GAAGAC 3 cut(s) 131, 944, 1374
Bbv12I GWGCWC 4 cut(s) 50, 403, 838, 892
BbvI GCAGC 7 cut(s) 80, 157, 346, 665, 682, 724, 1400
BccI CCATC 4 cut(s) 241, 278, 427, 749
BciT130I CCWGG 3 cut(s) 189, 639, 1095
BciVI GTATCC 1 cut(s) 1137
BcnI CCSGG 2 cut(s) 1156, 1168
BcoDI GTCTC 4 cut(s) 270, 365, 413, 975
BfaI CTAG 3 cut(s) 35, 1148, 1347
BfuAI ACCTGC 2 cut(s) 331, 590
BfuI GTATCC 1 cut(s) 1137
BisI GCNGC 9 cut(s) 6, 94, 171, 360, 654, 696, 738, 1389, 1392
BlsI GCNGC 9 cut(s) 7, 95, 172, 361, 655, 697, 739, 1390, 1393
Bme1390I CCNGG 5 cut(s) 189, 639, 1095, 1156, 1168
Bme18I GGWCC 4 cut(s) 320, 643, 1010, 1226
BmeT110I CYCGRG 1 cut(s) 769
BmgT120I GGNCC 4 cut(s) 320, 643, 1010, 1226
BmiI GGNNCC 5 cut(s) 321, 644, 645, 1228, 1320
BmrFI CCNGG 5 cut(s) 189, 639, 1095, 1156, 1168
BmsI GCATC 2 cut(s) 105, 1237
BpiI GAAGAC 3 cut(s) 131, 944, 1374
BpmI CTGGAG 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 876
BpuMI CCSGG 2 cut(s) 1156, 1168
BsaAI YACGTR 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 638, 1094
BsaWI WCCGGW 1 cut(s) 482
Bsc4I CCNNNNNNNGG 2 cut(s) 531, 761
Bse118I RCCGGY 1 cut(s) 1337
Bse1I ACTGG 3 cut(s) 22, 239, 868
BseBI CCWGG 3 cut(s) 189, 639, 1095
BseDI CCNNGG 2 cut(s) 638, 1094
BseGI GGATG 3 cut(s) 1206, 1252, 1371
BseLI CCNNNNNNNGG 2 cut(s) 531, 761
BseMII CTCAG 3 cut(s) 144, 360, 420
BseNI ACTGG 3 cut(s) 22, 239, 868
BseRI GAGGAG 1 cut(s) 134
BseX3I CGGCCG 1 cut(s) 1392
BseXI GCAGC 7 cut(s) 80, 157, 346, 665, 682, 724, 1400
Bsh1285I CGRYCG 1 cut(s) 1395
BshFI GGCC 2 cut(s) 1337, 1394
BshNI GGYRCC 1 cut(s) 1318
BsiEI CGRYCG 1 cut(s) 1395
BsiHKAI GWGCWC 4 cut(s) 50, 403, 838, 892
BsiHKCI CYCGRG 1 cut(s) 769
BsiSI CCGG 5 cut(s) 483, 814, 1155, 1167, 1338
BslFI GGGAC 3 cut(s) 333, 629, 1111
BslI CCNNNNNNNGG 2 cut(s) 531, 761
BsmAI GTCTC 4 cut(s) 270, 365, 413, 975
BsmFI GGGAC 3 cut(s) 333, 629, 1111
BsnI GGCC 2 cut(s) 1337, 1394
BsoBI CYCGRG 1 cut(s) 769
Bsp1286I GDGCHC 5 cut(s) 50, 266, 403, 838, 892
Bsp143I GATC 4 cut(s) 20, 311, 816, 1119
BspACI CCGC 7 cut(s) 51, 1005, 1061, 1081, 1185, 1197, 1391
BspANI GGCC 2 cut(s) 1337, 1394
BspCNI CTCAG 3 cut(s) 145, 361, 421
BspHI TCATGA 1 cut(s) 858
BspLI GGNNCC 5 cut(s) 321, 644, 645, 1228, 1320
BspMI ACCTGC 2 cut(s) 331, 590
BspPI GGATC 3 cut(s) 28, 319, 824
BspQI GCTCTTC 1 cut(s) 843
BspT107I GGYRCC 1 cut(s) 1318
BsrFI RCCGGY 1 cut(s) 1337
BsrI ACTGG 3 cut(s) 22, 239, 868
BssAI RCCGGY 1 cut(s) 1337
BssECI CCNNGG 2 cut(s) 638, 1094
BssMI GATC 4 cut(s) 20, 311, 816, 1119
BssNAI GTATAC 1 cut(s) 1067
BssSI CACGAG 1 cut(s) 519
Bst1107I GTATAC 1 cut(s) 1067
Bst2BI CACGAG 1 cut(s) 519
Bst2UI CCWGG 3 cut(s) 189, 639, 1095
Bst4CI ACNGT 2 cut(s) 89, 971
Bst6I CTCTTC 4 cut(s) 147, 843, 973, 1250
BstBAI YACGTR 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 1173
BstDEI CTNAG 8 cut(s) 63, 153, 369, 412, 429, 1034, 1111, 1406
BstF5I GGATG 3 cut(s) 1206, 1252, 1371
BstKTI GATC 4 cut(s) 23, 314, 819, 1122
BstMAI GTCTC 4 cut(s) 270, 365, 413, 975
BstMBI GATC 4 cut(s) 20, 311, 816, 1119
BstMCI CGRYCG 1 cut(s) 1395
BstMWI GCNNNNNNNGC 3 cut(s) 167, 365, 1058
BstNI CCWGG 3 cut(s) 189, 639, 1095
BstNSI RCATGY 2 cut(s) 498, 1175
BstSCI CCNGG 5 cut(s) 187, 637, 1093, 1154, 1166
BstV1I GCAGC 7 cut(s) 80, 157, 346, 665, 682, 724, 1400
BstV2I GAAGAC 3 cut(s) 131, 944, 1374
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BstZ17I GTATAC 1 cut(s) 1067
BstZI CGGCCG 1 cut(s) 1392
BsuI GTATCC 1 cut(s) 1137
BsuRI GGCC 2 cut(s) 1337, 1394
BtgZI GCGATG 1 cut(s) 1190
BtsCI GGATG 3 cut(s) 1206, 1252, 1371
BtsIMutI CAGTG 1 cut(s) 246
BveI ACCTGC 2 cut(s) 331, 590
Cac8I GCNNGC 1 cut(s) 1173
CciI TCATGA 1 cut(s) 858
Cfr10I RCCGGY 1 cut(s) 1337
Cfr13I GGNCC 4 cut(s) 320, 643, 1010, 1226
CseI GACGC 1 cut(s) 19
Csp6I GTAC 3 cut(s) 209, 486, 1029
CviAII CATG 7 cut(s) 338, 495, 569, 575, 859, 988, 1172
CviQI GTAC 3 cut(s) 209, 486, 1029
DdeI CTNAG 8 cut(s) 63, 153, 369, 412, 429, 1034, 1111, 1406
DpnI GATC 4 cut(s) 22, 313, 818, 1121
DpnII GATC 4 cut(s) 20, 311, 816, 1119
EaeI YGGCCR 1 cut(s) 1392
EagI CGGCCG 1 cut(s) 1392
Eam1104I CTCTTC 4 cut(s) 147, 843, 973, 1250
EarI CTCTTC 4 cut(s) 147, 843, 973, 1250
Ecl136II GAGCTC 1 cut(s) 890
EclXI CGGCCG 1 cut(s) 1392
Eco24I GRGCYC 2 cut(s) 266, 892
Eco47I GGWCC 4 cut(s) 320, 643, 1010, 1226
Eco52I CGGCCG 1 cut(s) 1392
Eco53kI GAGCTC 1 cut(s) 890
Eco57I CTGAAG 4 cut(s) 128, 645, 1097, 1347
Eco88I CYCGRG 1 cut(s) 769
EcoICRI GAGCTC 1 cut(s) 890
EcoO109I RGGNCCY 3 cut(s) 320, 643, 1226
EcoRII CCWGG 3 cut(s) 187, 637, 1093
EcoT38I GRGCYC 2 cut(s) 266, 892
FaeI CATG 7 cut(s) 341, 498, 572, 578, 862, 991, 1175
FaqI GGGAC 3 cut(s) 333, 629, 1111
FatI CATG 7 cut(s) 337, 494, 568, 574, 858, 987, 1171
FauI CCCGC 3 cut(s) 1012, 1054, 1190
FauNDI CATATG 1 cut(s) 1102
FblI GTMKAC 3 cut(s) 625, 1066, 1311
Fnu4HI GCNGC 9 cut(s) 6, 94, 171, 360, 654, 696, 738, 1389, 1392
FokI GGATG 3 cut(s) 1213, 1259, 1358
FriOI GRGCYC 2 cut(s) 266, 892
Fsp4HI GCNGC 9 cut(s) 6, 94, 171, 360, 654, 696, 738, 1389, 1392
FspBI CTAG 3 cut(s) 35, 1148, 1347
GluI GCNGC 9 cut(s) 6, 94, 171, 360, 654, 696, 738, 1389, 1392
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 2 cut(s) 1337, 1394
HapII CCGG 5 cut(s) 483, 814, 1155, 1167, 1338
HgaI GACGC 1 cut(s) 19
Hin1II CATG 7 cut(s) 341, 498, 572, 578, 862, 991, 1175
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HindIII AAGCTT 3 cut(s) 159, 391, 707
HinfI GANTC 3 cut(s) 251, 632, 906
HpaI GTTAAC 1 cut(s) 478
HpaII CCGG 5 cut(s) 483, 814, 1155, 1167, 1338
HphI GGTGA 3 cut(s) 195, 256, 448
Hpy166II GTNNAC 6 cut(s) 199, 233, 478, 626, 1067, 1312
Hpy188I TCNGA 6 cut(s) 147, 154, 664, 1246, 1289, 1366
Hpy188III TCNNGA 5 cut(s) 100, 267, 749, 859, 893
Hpy8I GTNNAC 6 cut(s) 199, 233, 478, 626, 1067, 1312
Hpy99I CGWCG 3 cut(s) 13, 82, 93
HpyAV CCTTC 6 cut(s) 535, 551, 1217, 1298, 1332, 1393
HpyCH4III ACNGT 2 cut(s) 89, 971
HpyCH4IV ACGT 2 cut(s) 211, 511
HpyCH4V TGCA 5 cut(s) 96, 257, 578, 1001, 1250
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 365, 1058
HpyF3I CTNAG 8 cut(s) 63, 153, 369, 412, 429, 1034, 1111, 1406
HpySE526I ACGT 2 cut(s) 211, 511
Hsp92II CATG 7 cut(s) 341, 498, 572, 578, 862, 991, 1175
KflI GGGWCCC 1 cut(s) 643
KspAI GTTAAC 1 cut(s) 478
Kzo9I GATC 4 cut(s) 20, 311, 816, 1119
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 5 cut(s) 53, 406, 682, 887, 962
Lsp1109I GCAGC 7 cut(s) 80, 157, 346, 665, 682, 724, 1400
LweI GCATC 2 cut(s) 105, 1237
MaeI CTAG 3 cut(s) 35, 1148, 1347
MaeII ACGT 2 cut(s) 211, 511
MaeIII GTNAC 2 cut(s) 764, 1187
MalI GATC 4 cut(s) 22, 313, 818, 1121
MboI GATC 4 cut(s) 20, 311, 816, 1119
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 5 cut(s) 50, 266, 403, 838, 892
MluCI AATT 4 cut(s) 134, 330, 1328, 1376
MlyI GAGTC 1 cut(s) 626
MmeI TCCRAC 3 cut(s) 108, 289, 1278
MnlI CCTC 9 cut(s) 112, 148, 185, 343, 484, 709, 796, 1283, 1327
MroXI GAANNNNTTC 2 cut(s) 134, 465
MseI TTAA 5 cut(s) 182, 477, 671, 920, 1085
MslI CAYNNNNRTG 4 cut(s) 101, 342, 573, 992
MspA1I CMGCKG 3 cut(s) 446, 1061, 1391
MspI CCGG 5 cut(s) 483, 814, 1155, 1167, 1338
MspR9I CCNGG 5 cut(s) 189, 639, 1095, 1156, 1168
MvaI CCWGG 3 cut(s) 189, 639, 1095
MwoI GCNNNNNNNGC 3 cut(s) 167, 365, 1058
NciI CCSGG 2 cut(s) 1156, 1168
NdeI CATATG 1 cut(s) 1102
NdeII GATC 4 cut(s) 20, 311, 816, 1119
NlaIII CATG 7 cut(s) 341, 498, 572, 578, 862, 991, 1175
NlaIV GGNNCC 5 cut(s) 321, 644, 645, 1228, 1320
NspI RCATGY 2 cut(s) 498, 1175
PaeI GCATGC 1 cut(s) 1175
PagI TCATGA 1 cut(s) 858
PciSI GCTCTTC 1 cut(s) 843
PcsI WCGNNNNNNNCGW 2 cut(s) 517, 1392
PdmI GAANNNNTTC 2 cut(s) 134, 465
PfeI GAWTC 2 cut(s) 251, 906
PkrI GCNGC 9 cut(s) 7, 95, 172, 361, 655, 697, 739, 1390, 1393
PleI GAGTC 1 cut(s) 626
PpsI GAGTC 1 cut(s) 626
Ppu21I YACGTR 1 cut(s) 212
PpuMI RGGWCCY 3 cut(s) 320, 643, 1226
Psp124BI GAGCTC 1 cut(s) 892
Psp5II RGGWCCY 3 cut(s) 320, 643, 1226
Psp6I CCWGG 3 cut(s) 187, 637, 1093
PspGI CCWGG 3 cut(s) 187, 637, 1093
PspN4I GGNNCC 5 cut(s) 321, 644, 645, 1228, 1320
PspPI GGNCC 4 cut(s) 320, 643, 1010, 1226
PspPPI RGGWCCY 3 cut(s) 320, 643, 1226
PsuI RGATCY 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 3 cut(s) 210, 487, 1030
RsaNI GTAC 3 cut(s) 209, 486, 1029
RseI CAYNNNNRTG 4 cut(s) 101, 342, 573, 992
SacI GAGCTC 1 cut(s) 892
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 5 cut(s) 182, 477, 671, 920, 1085
SatI GCNGC 9 cut(s) 6, 94, 171, 360, 654, 696, 738, 1389, 1392
Sau3AI GATC 4 cut(s) 20, 311, 816, 1119
Sau96I GGNCC 4 cut(s) 320, 643, 1010, 1226
SchI GAGTC 1 cut(s) 626
ScrFI CCNGG 5 cut(s) 189, 639, 1095, 1156, 1168
SduI GDGCHC 5 cut(s) 50, 266, 403, 838, 892
SfaNI GCATC 2 cut(s) 105, 1237
SinI GGWCC 4 cut(s) 320, 643, 1010, 1226
SmiMI CAYNNNNRTG 4 cut(s) 101, 342, 573, 992
SmlI CTYRAG 1 cut(s) 891
SmoI CTYRAG 1 cut(s) 891
SphI GCATGC 1 cut(s) 1175
Sse9I AATT 4 cut(s) 134, 330, 1328, 1376
SsiI CCGC 7 cut(s) 51, 1005, 1061, 1081, 1185, 1197, 1391
SspMI CTAG 3 cut(s) 35, 1148, 1347
SstI GAGCTC 1 cut(s) 892
StyD4I CCNGG 5 cut(s) 187, 637, 1093, 1154, 1166
TaaI ACNGT 2 cut(s) 89, 971
TaiI ACGT 2 cut(s) 214, 514
TaqI TCGA 2 cut(s) 849, 1332
TaqII GACCGA 1 cut(s) 1027
TasI AATT 4 cut(s) 134, 330, 1328, 1376
TauI GCSGC 1 cut(s) 1394
TfiI GAWTC 2 cut(s) 251, 906
Tru1I TTAA 5 cut(s) 182, 477, 671, 920, 1085
Tru9I TTAA 5 cut(s) 182, 477, 671, 920, 1085
TscAI CASTG 1 cut(s) 246
TseI GCWGC 8 cut(s) 5, 93, 170, 359, 653, 695, 737, 1388
TspDTI ATGAA 6 cut(s) 306, 392, 535, 787, 867, 1119
TspGWI ACGGA 2 cut(s) 1035, 1235
TspRI CASTG 1 cut(s) 246
VpaK11BI GGWCC 4 cut(s) 320, 643, 1010, 1226
XapI RAATTY 1 cut(s) 134
XceI RCATGY 2 cut(s) 498, 1175
XmiI GTMKAC 3 cut(s) 625, 1066, 1311
XmnI GAANNNNTTC 2 cut(s) 134, 465
XspI CTAG 3 cut(s) 35, 1148, 1347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.