Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011111

Physical Location & Seq

Genomic Coordinates Forward (+)

50934845 .. 50936900

Gene Structure 2056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGCCTGGAGGTGTGAATTCGCCTGTACGTGCTTTCAAATCTGTTGGTGGACAACCTTTTGTGGTTGATTCGGCCAAGGGCTCTCGCTTGTGGGATATAGATGGGAATGAGTATATTGACTATGTGGGTTCTTGGGGCCCTGCAATAATTGGACATGCAGATGATGACGTGCTTGCAGCTTTGGCTGAAACAATGAAGAAGGGAACAAGCTTCGGTGCACCATGTCTTCTGGAGAATGTTCTGGCAGAAATGAAGATCTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCAGGTACTGAAGCATGCCTGAGTGTGCTCCGCCTGGCCCGTGCTTACACTGGCCGAGGGAAGATTGTTAAGTTTGAGGGTTGTTACCATGGTCATGCCGATTCATTTCTTGTGAAGGCTGCCCCCTACAATGACTTGTTGGCTGTGGAAGCTCTCTTTCAAAGTAACAAAGGAAAAATTGCTGCAATCATCCTTGAACCTGTTGTTGGGAACTCTGGTTTTATTCCCCCTAAACCCCATTTCCGTAATAGCCTGCGCAAAATCTCCACAGAACACGGTGCTCTCCTCAATTATGATGAAGTGATGACTGGCTTTCGCTTGTCCTATGGTGGAGCACAGGAGTATTTTGGCATTACTCCTGATCTAACGACACTCGGCAAGATCCTTGGTGGCGGTCTGCCAATTGGTGCATATGGCGGAAGGAGGGAGATAACGGAAATGGTAGCACCAGCAGGTCCAGTACTGTACCAAGCCGGGACCTTCTGCGGCAACCCATTGTCAATGACTGCAGGGATTCAGACTCTTAAGTGGTTAAAGGAGCCAGGAAGTTACGAAGACCTGAATAAGATTACAAGTGAACTAATTCAAGGGCCTGTTTACAACTTTGACGATGCAAAAGGGAGTGACTGGGCAAAGTATGGGAGGTTTCATACGGGAATGCTGGAGGGAGGTGTATACTTTGCTCCTTCACAGTTTGAGGCCGGGCTTACAAGCATGGCACGTACTCCTGAAGACATCCGAATCACAATAGCTGCTGCAGAGAAAGTTTTTAGCCAGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

359

Amino Acids

38.51

Weight (kDa)

5.93

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_3	PF00202	19 - 136	4.8e-24	Aminotransferase class-III
Aminotran_3	PF00202	147 - 295	4.8e-35	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48730 AT5G63570 AT5G63570
fragaria_vesca	FvH4_5g08950 FvH4_5g08950
malus_domestica	MD06G1136900.v1.1 MD14G1151700.v1.1
prunus_persica	Prupe.5G146800_v2.0.a1 Prupe.5G146800_v2.0.a1
pyrus_communis	pycom06g12820
rosa_chinensis	RchiOBHm_Chr7g0189421
rosa_laevigata	RLG00000003783 RLG00000004612
rosa_multiflora	Rmu_sc0001282.1_g000016
rosa_roxburghii	Rroxscaffold_3G00256580 Rroxscaffold_3G00265490
rosa_rugosa	Rorug06G0497700
rosa_samantha	Rh7BG105200 Rh7DG104600
rosa_wichuraiana	Rw7G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	554
Acc36I	ACCTGC	1 cut(s)	740
AccI	GTMKAC	1 cut(s)	972
AciI	CCGC	4 cut(s)	328, 690, 714, 783
AclWI	GGATC	1 cut(s)	673
AcoI	YGGCCR	2 cut(s)	72, 349
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	2 cut(s)	327, 1047
AfaI	GTAC	5 cut(s)	27, 304, 759, 764, 1021
AfiI	CCNNNNNNNGG	1 cut(s)	503
AflII	CTTAAG	1 cut(s)	821
AgsI	TTSAA	4 cut(s)	37, 458, 494, 884
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	3 cut(s)	4, 330, 838
AjuI	GAANNNNNNNTTGG	2 cut(s)	486, 518
AluBI	AGCT	5 cut(s)	179, 210, 263, 449, 1049
AluI	AGCT	5 cut(s)	179, 210, 263, 449, 1049
Alw21I	GWGCWC	4 cut(s)	220, 327, 580, 634
Alw44I	GTGCAC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	673
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	6 cut(s)	72, 136, 333, 349, 887, 996
ApaI	GGGCCC	1 cut(s)	140
ApaLI	GTGCAC	1 cut(s)	216
ApeKI	GCWGC	5 cut(s)	176, 416, 479, 1049, 1052
ApoI	RAATTY	1 cut(s)	16
Asp700I	GAANNNNTTC	2 cut(s)	282, 879
AspLEI	GCGC	1 cut(s)	555
AspS9I	GGNCC	6 cut(s)	136, 137, 334, 752, 774, 887
AsuC2I	CCSGG	2 cut(s)	772, 1000
AvaII	GGWCC	2 cut(s)	752, 774
BaeGI	GKGCMC	2 cut(s)	140, 220
BanII	GRGCYC	2 cut(s)	83, 140
BbsI	GAAGAC	3 cut(s)	218, 858, 1035
Bbv12I	GWGCWC	4 cut(s)	220, 327, 580, 634
BbvI	GCAGC	5 cut(s)	188, 403, 466, 1036, 1039
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	3 cut(s)	6, 332, 840
BcnI	CCSGG	2 cut(s)	772, 1000
BfmI	CTRYAG	2 cut(s)	804, 1053
BfrI	CTTAAG	1 cut(s)	821
BfuAI	ACCTGC	1 cut(s)	740
BglII	AGATCT	1 cut(s)	255
BisI	GCNGC	6 cut(s)	177, 417, 480, 784, 1050, 1053
BlsI	GCNGC	6 cut(s)	178, 418, 481, 785, 1051, 1054
BmcAI	AGTACT	1 cut(s)	759
Bme1390I	CCNGG	5 cut(s)	6, 332, 772, 840, 1000
Bme18I	GGWCC	2 cut(s)	752, 774
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	6 cut(s)	136, 137, 334, 752, 774, 887
BmiI	GGNNCC	4 cut(s)	137, 138, 775, 837
BmrFI	CCNGG	5 cut(s)	6, 332, 772, 840, 1000
BmrI	ACTGGG	1 cut(s)	934
BmsI	GCATC	1 cut(s)	898
BmuI	ACTGGG	1 cut(s)	934
BpiI	GAAGAC	3 cut(s)	218, 858, 1035
BpmI	CTGGAG	3 cut(s)	27, 251, 980
BpuMI	CCSGG	2 cut(s)	772, 1000
BsaAI	YACGTR	2 cut(s)	29, 1019
BsaJI	CCNNGG	4 cut(s)	75, 352, 385, 682
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse1I	ACTGG	4 cut(s)	352, 610, 755, 929
BseBI	CCWGG	3 cut(s)	6, 332, 840
BseDI	CCNNGG	4 cut(s)	75, 352, 385, 682
BseGI	GGATG	2 cut(s)	486, 1032
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMII	CTCAG	3 cut(s)	273, 308, 312
BseNI	ACTGG	4 cut(s)	352, 610, 755, 929
BseRI	GAGGAG	1 cut(s)	572
BseSI	GKGCMC	2 cut(s)	140, 220
BseXI	GCAGC	5 cut(s)	188, 403, 466, 1036, 1039
BshFI	GGCC	6 cut(s)	74, 138, 335, 351, 889, 998
BsiHKAI	GWGCWC	4 cut(s)	220, 327, 580, 634
BsiSI	CCGG	2 cut(s)	771, 999
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	787
BsmI	GAATGC	1 cut(s)	960
BsnI	GGCC	6 cut(s)	74, 138, 335, 351, 889, 998
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	6 cut(s)	83, 140, 220, 327, 580, 634
Bsp143I	GATC	3 cut(s)	255, 658, 678
Bsp19I	CCATGG	1 cut(s)	385
BspACI	CCGC	4 cut(s)	328, 690, 714, 783
BspANI	GGCC	6 cut(s)	74, 138, 335, 351, 889, 998
BspCNI	CTCAG	3 cut(s)	272, 309, 311
BspLI	GGNNCC	4 cut(s)	137, 138, 775, 837
BspMAI	CTGCAG	2 cut(s)	808, 1057
BspMI	ACCTGC	1 cut(s)	740
BspPI	GGATC	1 cut(s)	673
BspTI	CTTAAG	1 cut(s)	821
BsrI	ACTGG	4 cut(s)	352, 610, 755, 929
BssECI	CCNNGG	4 cut(s)	75, 352, 385, 682
BssMI	GATC	3 cut(s)	255, 658, 678
BssNAI	GTATAC	1 cut(s)	973
BssT1I	CCWWGG	3 cut(s)	75, 385, 682
Bst1107I	GTATAC	1 cut(s)	973
Bst2UI	CCWGG	3 cut(s)	6, 332, 840
Bst4CI	ACNGT	3 cut(s)	575, 762, 990
BstAFI	CTTAAG	1 cut(s)	821
BstBAI	YACGTR	2 cut(s)	29, 1019
BstC8I	GCNNGC	3 cut(s)	174, 313, 551
BstDEI	CTNAG	3 cut(s)	259, 298, 317
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	2 cut(s)	486, 1032
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	3 cut(s)	258, 661, 681
BstMBI	GATC	3 cut(s)	255, 658, 678
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 446
BstNI	CCWGG	3 cut(s)	6, 332, 840
BstNSI	RCATGY	2 cut(s)	158, 315
BstSCI	CCNGG	5 cut(s)	4, 330, 770, 838, 998
BstSFI	CTRYAG	2 cut(s)	804, 1053
BstSLI	GKGCMC	2 cut(s)	140, 220
BstV1I	GCAGC	5 cut(s)	188, 403, 466, 1036, 1039
BstV2I	GAAGAC	3 cut(s)	218, 858, 1035
BstX2I	RGATCY	2 cut(s)	255, 678
BstYI	RGATCY	2 cut(s)	255, 678
BstZ17I	GTATAC	1 cut(s)	973
BsuRI	GGCC	6 cut(s)	74, 138, 335, 351, 889, 998
BtgI	CCRYGG	1 cut(s)	385
BtrI	CACGTC	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	486, 1032
BtsIMutI	CAGTG	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	740
Cac8I	GCNNGC	3 cut(s)	174, 313, 551
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	555
Cfr13I	GGNCC	6 cut(s)	136, 137, 334, 752, 774, 887
Csp6I	GTAC	5 cut(s)	26, 303, 758, 763, 1020
CviAII	CATG	6 cut(s)	155, 222, 312, 386, 392, 1012
CviQI	GTAC	5 cut(s)	26, 303, 758, 763, 1020
DdeI	CTNAG	3 cut(s)	259, 298, 317
DpnI	GATC	3 cut(s)	257, 660, 680
DpnII	GATC	3 cut(s)	255, 658, 678
EaeI	YGGCCR	2 cut(s)	72, 349
EciI	GGCGGA	2 cut(s)	317, 729
Eco130I	CCWWGG	3 cut(s)	75, 385, 682
Eco24I	GRGCYC	2 cut(s)	83, 140
Eco47I	GGWCC	2 cut(s)	752, 774
Eco57I	CTGAAG	2 cut(s)	327, 1047
EcoO109I	RGGNCCY	4 cut(s)	136, 137, 774, 887
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	3 cut(s)	4, 330, 838
EcoT14I	CCWWGG	3 cut(s)	75, 385, 682
EcoT38I	GRGCYC	2 cut(s)	83, 140
ErhI	CCWWGG	3 cut(s)	75, 385, 682
FaeI	CATG	6 cut(s)	158, 225, 315, 389, 395, 1015
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	6 cut(s)	154, 221, 311, 385, 391, 1011
FauNDI	CATATG	1 cut(s)	709
FblI	GTMKAC	1 cut(s)	972
Fnu4HI	GCNGC	6 cut(s)	177, 417, 480, 784, 1050, 1053
FokI	GGATG	2 cut(s)	473, 1019
FriOI	GRGCYC	2 cut(s)	83, 140
Fsp4HI	GCNGC	6 cut(s)	177, 417, 480, 784, 1050, 1053
FspI	TGCGCA	1 cut(s)	554
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	6 cut(s)	177, 417, 480, 784, 1050, 1053
GsuI	CTGGAG	3 cut(s)	27, 251, 980
HaeIII	GGCC	6 cut(s)	74, 138, 335, 351, 889, 998
HapII	CCGG	2 cut(s)	771, 999
HhaI	GCGC	1 cut(s)	555
Hin1II	CATG	6 cut(s)	158, 225, 315, 389, 395, 1015
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	5 cut(s)	68, 398, 811, 817, 1038
HpaII	CCGG	2 cut(s)	771, 999
Hpy166II	GTNNAC	6 cut(s)	50, 218, 295, 875, 895, 973
Hpy188I	TCNGA	2 cut(s)	816, 1037
Hpy188III	TCNNGA	3 cut(s)	230, 656, 1025
Hpy8I	GTNNAC	6 cut(s)	50, 218, 295, 875, 895, 973
HpyAV	CCTTC	5 cut(s)	193, 406, 711, 787, 993
HpyCH4III	ACNGT	3 cut(s)	575, 762, 990
HpyCH4IV	ACGT	3 cut(s)	28, 168, 1018
HpyCH4V	TGCA	9 cut(s)	143, 158, 176, 218, 482, 707, 806, 911, 1055
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 446
HpyF3I	CTNAG	3 cut(s)	259, 298, 317
HpySE526I	ACGT	3 cut(s)	28, 168, 1018
Hsp92II	CATG	6 cut(s)	158, 225, 315, 389, 395, 1015
HspAI	GCGC	1 cut(s)	553
Kzo9I	GATC	3 cut(s)	255, 658, 678
LmnI	GCTCC	4 cut(s)	330, 629, 835, 985
Lsp1109I	GCAGC	5 cut(s)	188, 403, 466, 1036, 1039
LweI	GCATC	1 cut(s)	898
MaeII	ACGT	3 cut(s)	28, 168, 1018
MaeIII	GTNAC	4 cut(s)	380, 461, 845, 920
MalI	GATC	3 cut(s)	257, 660, 680
MboI	GATC	3 cut(s)	255, 658, 678
MboII	GAAGA	6 cut(s)	208, 218, 265, 370, 863, 1040
MfeI	CAATTG	1 cut(s)	699
MflI	RGATCY	2 cut(s)	255, 678
MhlI	GDGCHC	6 cut(s)	83, 140, 220, 327, 580, 634
MluCI	AATT	6 cut(s)	16, 147, 474, 586, 699, 879
MlyI	GAGTC	1 cut(s)	811
MnlI	CCTC	8 cut(s)	347, 367, 593, 714, 933, 955, 959, 988
MroXI	GAANNNNTTC	2 cut(s)	282, 879
MseI	TTAA	3 cut(s)	366, 822, 830
MslI	CAYNNNNRTG	3 cut(s)	159, 278, 390
MspA1I	CMGCKG	1 cut(s)	263
MspCI	CTTAAG	1 cut(s)	821
MspI	CCGG	2 cut(s)	771, 999
MspR9I	CCNGG	5 cut(s)	6, 332, 772, 840, 1000
MunI	CAATTG	1 cut(s)	699
Mva1269I	GAATGC	1 cut(s)	960
MvaI	CCWGG	3 cut(s)	6, 332, 840
MwoI	GCNNNNNNNGC	2 cut(s)	182, 446
NciI	CCSGG	2 cut(s)	772, 1000
NcoI	CCATGG	1 cut(s)	385
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	3 cut(s)	255, 658, 678
NlaIII	CATG	6 cut(s)	158, 225, 315, 389, 395, 1015
NlaIV	GGNNCC	4 cut(s)	137, 138, 775, 837
NmeAIII	GCCGAG	2 cut(s)	377, 651
NmuCI	GTSAC	1 cut(s)	920
NsbI	TGCGCA	1 cut(s)	554
NspI	RCATGY	2 cut(s)	158, 315
PaeI	GCATGC	1 cut(s)	315
PctI	GAATGC	1 cut(s)	960
PdmI	GAANNNNTTC	2 cut(s)	282, 879
PfeI	GAWTC	4 cut(s)	68, 398, 811, 1038
PkrI	GCNGC	6 cut(s)	178, 418, 481, 785, 1051, 1054
PleI	GAGTC	1 cut(s)	811
PpsI	GAGTC	1 cut(s)	811
Ppu21I	YACGTR	2 cut(s)	29, 1019
PpuMI	RGGWCCY	1 cut(s)	774
Psp5II	RGGWCCY	1 cut(s)	774
Psp6I	CCWGG	3 cut(s)	4, 330, 838
PspGI	CCWGG	3 cut(s)	4, 330, 838
PspN4I	GGNNCC	4 cut(s)	137, 138, 775, 837
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	6 cut(s)	136, 137, 334, 752, 774, 887
PspPPI	RGGWCCY	1 cut(s)	774
PstI	CTGCAG	2 cut(s)	808, 1057
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	2 cut(s)	255, 678
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	5 cut(s)	27, 304, 759, 764, 1021
RsaNI	GTAC	5 cut(s)	26, 303, 758, 763, 1020
RseI	CAYNNNNRTG	3 cut(s)	159, 278, 390
SaqAI	TTAA	3 cut(s)	366, 822, 830
SatI	GCNGC	6 cut(s)	177, 417, 480, 784, 1050, 1053
Sau3AI	GATC	3 cut(s)	255, 658, 678
Sau96I	GGNCC	6 cut(s)	136, 137, 334, 752, 774, 887
ScaI	AGTACT	1 cut(s)	759
SchI	GAGTC	1 cut(s)	811
ScrFI	CCNGG	5 cut(s)	6, 332, 772, 840, 1000
SduI	GDGCHC	6 cut(s)	83, 140, 220, 327, 580, 634
SfaNI	GCATC	1 cut(s)	898
SfcI	CTRYAG	2 cut(s)	804, 1053
SinI	GGWCC	2 cut(s)	752, 774
SmiMI	CAYNNNNRTG	3 cut(s)	159, 278, 390
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
SphI	GCATGC	1 cut(s)	315
Sse9I	AATT	6 cut(s)	16, 147, 474, 586, 699, 879
SsiI	CCGC	4 cut(s)	328, 690, 714, 783
StyD4I	CCNGG	5 cut(s)	4, 330, 770, 838, 998
StyI	CCWWGG	3 cut(s)	75, 385, 682
TaaI	ACNGT	3 cut(s)	575, 762, 990
TaiI	ACGT	3 cut(s)	31, 171, 1021
TaqI	TCGA	1 cut(s)	286
TasI	AATT	6 cut(s)	16, 147, 474, 586, 699, 879
TatI	WGTACW	1 cut(s)	757
TauI	GCSGC	1 cut(s)	786
TfiI	GAWTC	4 cut(s)	68, 398, 811, 1038
Tru1I	TTAA	3 cut(s)	366, 822, 830
Tru9I	TTAA	3 cut(s)	366, 822, 830
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	920
TseI	GCWGC	5 cut(s)	176, 416, 479, 1049, 1052
Tsp45I	GTSAC	1 cut(s)	920
TspDTI	ATGAA	5 cut(s)	209, 266, 390, 609, 935
TspGWI	ACGGA	2 cut(s)	530, 746
TspRI	CASTG	1 cut(s)	352
Vha464I	CTTAAG	1 cut(s)	821
VneI	GTGCAC	1 cut(s)	216
VpaK11BI	GGWCC	2 cut(s)	752, 774
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	2 cut(s)	158, 315
XmiI	GTMKAC	1 cut(s)	972
XmnI	GAANNNNTTC	2 cut(s)	282, 879
ZrmI	AGTACT	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.