Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011111

Physical Location & Seq

Genomic Coordinates Forward (+)

52665337 .. 52668092

Gene Structure 2756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003783

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGCCTGGAGGTGTGAATTCGCCTGTACGTGCTTTCAAATCTGTTGGTGGACAACCTTTTGTGGTTGATTTGGCCAAGGGCTCTCGCTTGTGGGATATAGATGGGAATGAGTATATTGACTATGTGGGTTCTTGGGGTCCTGCAATAATTGGACATGCAGATGATGAGGTACGTACTTGTAGCTTTGGCTTAAACAATGAAGAAATGAACAAGCTTCGGTGCACCATGCCTTCTAGAGAATGTTCTGGCAGAAAGCCAGAAATGATGATCTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCAGGTACTGAAGCATGCCTGAGTGTGCTCCGCCTGGCCCGTGCTTACACTGGCCGAGGGAAGATTATTAAGTTTGAGGGTTGTTACCATGGTCATGCCGATTCATTTCTTGTGAAGGCTGCCCCTTACAATGACTTGTTGGCTGTGGAAGCTCTCTTTCAAAGTAACAATGGAAAAATTGCTGCAATCATCCTCGAACCTGTTGTTGGGAACTCTGGTTTTATTCCCACTAAACCCCATTTCCGTAATGGTCTGGGCAAAATCTCCACAGAACACGGTGCTCTCCTCATTTATGATGAAGTGATGACTGGCTTCCGCTTGTCTTATGGTGGAGCACAGGAGTATTTTGGCATTACTCCTGATCTAACGACACTCGGCAAGATCATTGGTGGCGGTCTGCCAATTGGTGCATATGGCGGAAGGAGGGAGATAATGGAAATGGTAGCACCAGCAGGTCCACAGTACCAAGCCGGGACCTTCTGCGGCAACCCATTGTCAATGACTGCAGGGATTCAGACTCTTAAGAGGTTAAAGGAGCCAGGAAGTTACGAACACCTGAATAAGATTACAAGTGAACTAATTCAAGGTATCATAGATGCCGGGAAGAGGGCTGGGCATACAATCTGCGGTGGATGCATAAGTGGGATCTTGGGTTTTTCTTCACTGAAGGGCCTGTTTACAAATTTGACGATGCAAAAGGGAGTGACAGTGCAAAGTATGGGAGGTTTCAAAGGAATGCTGGAGGAAGGTGTATACTTCGCTCCTTCACAGTTTGAGGCCGGGCTTACAAGCATGGCACATACTCCTGAAGACATCCGAATCACAATAGCTGCTGCAGAGAAAGTTTTTAGGCAGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

390

Amino Acids

41.71

Weight (kDa)

7.59

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_3	PF00202	19 - 141	9.3e-20	Aminotransferase class-III
Aminotran_3	PF00202	151 - 344	2.5e-37	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48730 AT5G63570 AT5G63570
fragaria_vesca	FvH4_5g08950 FvH4_5g08950
malus_domestica	MD06G1136900.v1.1 MD14G1151700.v1.1
prunus_persica	Prupe.5G146800_v2.0.a1 Prupe.5G146800_v2.0.a1
pyrus_communis	pycom06g12820
rosa_chinensis	RchiOBHm_Chr7g0189421
rosa_laevigata	RLG00000003783 RLG00000004612
rosa_multiflora	Rmu_sc0001282.1_g000016
rosa_roxburghii	Rroxscaffold_3G00256580 Rroxscaffold_3G00265490
rosa_rugosa	Rorug06G0497700
rosa_samantha	Rh7BG105200 Rh7DG104600
rosa_wichuraiana	Rw7G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	752
AccI	GTMKAC	1 cut(s)	1062
AciI	CCGC	6 cut(s)	340, 625, 702, 726, 792, 936
AclWI	GGATC	1 cut(s)	962
AcoI	YGGCCR	2 cut(s)	72, 361
AcsI	RAATTY	2 cut(s)	16, 991
AcuI	CTGAAG	3 cut(s)	339, 995, 1137
AfaI	GTAC	5 cut(s)	27, 171, 175, 316, 773
AfiI	CCNNNNNNNGG	2 cut(s)	515, 915
AflII	CTTAAG	1 cut(s)	830
AgsI	TTSAA	4 cut(s)	37, 470, 893, 1039
AjnI	CCWGG	3 cut(s)	4, 342, 847
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	5 cut(s)	183, 214, 275, 461, 1139
AluI	AGCT	5 cut(s)	183, 214, 275, 461, 1139
Alw21I	GWGCWC	4 cut(s)	224, 339, 592, 646
Alw44I	GTGCAC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	962
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	5 cut(s)	72, 345, 361, 979, 1086
ApaLI	GTGCAC	1 cut(s)	220
ApeKI	GCWGC	4 cut(s)	428, 491, 1139, 1142
ApoI	RAATTY	2 cut(s)	16, 991
Asp700I	GAANNNNTTC	2 cut(s)	294, 888
AspS9I	GGNCC	5 cut(s)	137, 346, 764, 783, 979
AsuC2I	CCSGG	3 cut(s)	781, 910, 1090
AvaII	GGWCC	3 cut(s)	137, 764, 783
BaeGI	GKGCMC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	1125
Bbv12I	GWGCWC	4 cut(s)	224, 339, 592, 646
BbvI	GCAGC	4 cut(s)	415, 478, 1126, 1129
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	3 cut(s)	6, 344, 849
BcnI	CCSGG	3 cut(s)	781, 910, 1090
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	2 cut(s)	813, 1143
BfrI	CTTAAG	1 cut(s)	830
BfuAI	ACCTGC	1 cut(s)	752
BisI	GCNGC	5 cut(s)	429, 492, 793, 1140, 1143
BlsI	GCNGC	5 cut(s)	430, 493, 794, 1141, 1144
Bme1390I	CCNGG	6 cut(s)	6, 344, 781, 849, 910, 1090
Bme18I	GGWCC	3 cut(s)	137, 764, 783
BmgT120I	GGNCC	5 cut(s)	137, 346, 764, 783, 979
BmiI	GGNNCC	3 cut(s)	138, 784, 846
BmrFI	CCNGG	6 cut(s)	6, 344, 781, 849, 910, 1090
BmsI	GCATC	3 cut(s)	895, 932, 990
BpiI	GAAGAC	1 cut(s)	1125
BpmI	CTGGAG	2 cut(s)	27, 1070
BpuMI	CCSGG	3 cut(s)	781, 910, 1090
BsaAI	YACGTR	2 cut(s)	29, 173
BsaJI	CCNNGG	3 cut(s)	75, 364, 397
BsaXI	ACNNNNNCTCC	2 cut(s)	1002, 1032
Bsc4I	CCNNNNNNNGG	2 cut(s)	515, 915
Bse1I	ACTGG	2 cut(s)	364, 622
BseBI	CCWGG	3 cut(s)	6, 344, 849
BseDI	CCNNGG	3 cut(s)	75, 364, 397
BseGI	GGATG	3 cut(s)	498, 947, 1122
BseLI	CCNNNNNNNGG	2 cut(s)	515, 915
BseMII	CTCAG	3 cut(s)	285, 320, 324
BseNI	ACTGG	2 cut(s)	364, 622
BseRI	GAGGAG	1 cut(s)	584
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	4 cut(s)	415, 478, 1126, 1129
BseYI	CCCAGC	1 cut(s)	920
BshFI	GGCC	5 cut(s)	74, 347, 363, 981, 1088
BsiHKAI	GWGCWC	4 cut(s)	224, 339, 592, 646
BsiSI	CCGG	3 cut(s)	780, 909, 1089
BslFI	GGGAC	1 cut(s)	796
BslI	CCNNNNNNNGG	2 cut(s)	515, 915
BsmFI	GGGAC	1 cut(s)	796
BsmI	GAATGC	1 cut(s)	1050
BsnI	GGCC	5 cut(s)	74, 347, 363, 981, 1088
Bsp1286I	GDGCHC	5 cut(s)	83, 224, 339, 592, 646
Bsp143I	GATC	4 cut(s)	267, 670, 690, 954
Bsp19I	CCATGG	1 cut(s)	397
BspACI	CCGC	6 cut(s)	340, 625, 702, 726, 792, 936
BspANI	GGCC	5 cut(s)	74, 347, 363, 981, 1088
BspCNI	CTCAG	3 cut(s)	284, 321, 323
BspLI	GGNNCC	3 cut(s)	138, 784, 846
BspMAI	CTGCAG	2 cut(s)	817, 1147
BspMI	ACCTGC	1 cut(s)	752
BspPI	GGATC	1 cut(s)	962
BspTI	CTTAAG	1 cut(s)	830
BsrI	ACTGG	2 cut(s)	364, 622
BssECI	CCNNGG	3 cut(s)	75, 364, 397
BssMI	GATC	4 cut(s)	267, 670, 690, 954
BssNAI	GTATAC	1 cut(s)	1063
BssT1I	CCWWGG	2 cut(s)	75, 397
Bst1107I	GTATAC	1 cut(s)	1063
Bst2UI	CCWGG	3 cut(s)	6, 344, 849
Bst4CI	ACNGT	4 cut(s)	587, 771, 1018, 1080
Bst6I	CTCTTC	1 cut(s)	908
BstAFI	CTTAAG	1 cut(s)	830
BstBAI	YACGTR	2 cut(s)	29, 173
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	4 cut(s)	271, 310, 329, 1167
BstDSI	CCRYGG	1 cut(s)	397
BstF5I	GGATG	3 cut(s)	498, 947, 1122
BstKTI	GATC	4 cut(s)	270, 673, 693, 957
BstMBI	GATC	4 cut(s)	267, 670, 690, 954
BstMWI	GCNNNNNNNGC	2 cut(s)	458, 942
BstNI	CCWGG	3 cut(s)	6, 344, 849
BstNSI	RCATGY	2 cut(s)	158, 327
BstSCI	CCNGG	6 cut(s)	4, 342, 779, 847, 908, 1088
BstSFI	CTRYAG	2 cut(s)	813, 1143
BstSLI	GKGCMC	1 cut(s)	224
BstSNI	TACGTA	1 cut(s)	173
BstV1I	GCAGC	4 cut(s)	415, 478, 1126, 1129
BstV2I	GAAGAC	1 cut(s)	1125
BstX2I	RGATCY	1 cut(s)	954
BstYI	RGATCY	1 cut(s)	954
BstZ17I	GTATAC	1 cut(s)	1063
BsuRI	GGCC	5 cut(s)	74, 347, 363, 981, 1088
BtgI	CCRYGG	1 cut(s)	397
BtsCI	GGATG	3 cut(s)	498, 947, 1122
BtsIMutI	CAGTG	3 cut(s)	357, 971, 1023
BveI	ACCTGC	1 cut(s)	752
Cac8I	GCNNGC	1 cut(s)	325
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr13I	GGNCC	5 cut(s)	137, 346, 764, 783, 979
Csp6I	GTAC	5 cut(s)	26, 170, 174, 315, 772
CviAII	CATG	6 cut(s)	155, 226, 324, 398, 404, 1102
CviQI	GTAC	5 cut(s)	26, 170, 174, 315, 772
DdeI	CTNAG	4 cut(s)	271, 310, 329, 1167
DpnI	GATC	4 cut(s)	269, 672, 692, 956
DpnII	GATC	4 cut(s)	267, 670, 690, 954
EaeI	YGGCCR	2 cut(s)	72, 361
Eam1104I	CTCTTC	1 cut(s)	908
EarI	CTCTTC	1 cut(s)	908
EciI	GGCGGA	2 cut(s)	329, 741
Eco105I	TACGTA	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	75, 397
Eco24I	GRGCYC	1 cut(s)	83
Eco47I	GGWCC	3 cut(s)	137, 764, 783
Eco57I	CTGAAG	3 cut(s)	339, 995, 1137
EcoO109I	RGGNCCY	3 cut(s)	137, 783, 979
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	3 cut(s)	4, 342, 847
EcoT14I	CCWWGG	2 cut(s)	75, 397
EcoT22I	ATGCAT	1 cut(s)	947
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	2 cut(s)	75, 397
FaeI	CATG	6 cut(s)	158, 229, 327, 401, 407, 1105
FaqI	GGGAC	1 cut(s)	796
FatI	CATG	6 cut(s)	154, 225, 323, 397, 403, 1101
FauNDI	CATATG	1 cut(s)	721
FblI	GTMKAC	1 cut(s)	1062
Fnu4HI	GCNGC	5 cut(s)	429, 492, 793, 1140, 1143
FokI	GGATG	3 cut(s)	485, 954, 1109
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	5 cut(s)	429, 492, 793, 1140, 1143
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	5 cut(s)	429, 492, 793, 1140, 1143
GsaI	CCCAGC	1 cut(s)	924
GsuI	CTGGAG	2 cut(s)	27, 1070
HaeIII	GGCC	5 cut(s)	74, 347, 363, 981, 1088
HapII	CCGG	3 cut(s)	780, 909, 1089
Hin1II	CATG	6 cut(s)	158, 229, 327, 401, 407, 1105
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	4 cut(s)	410, 820, 826, 1128
HpaII	CCGG	3 cut(s)	780, 909, 1089
Hpy166II	GTNNAC	7 cut(s)	50, 222, 307, 767, 884, 987, 1063
Hpy188I	TCNGA	2 cut(s)	825, 1127
Hpy188III	TCNNGA	3 cut(s)	234, 668, 1115
Hpy8I	GTNNAC	7 cut(s)	50, 222, 307, 767, 884, 987, 1063
HpyAV	CCTTC	7 cut(s)	240, 418, 723, 796, 970, 1049, 1083
HpyCH4III	ACNGT	4 cut(s)	587, 771, 1018, 1080
HpyCH4IV	ACGT	2 cut(s)	28, 172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	458, 942
HpyF3I	CTNAG	4 cut(s)	271, 310, 329, 1167
HpySE526I	ACGT	2 cut(s)	28, 172
Hsp92II	CATG	6 cut(s)	158, 229, 327, 401, 407, 1105
Kzo9I	GATC	4 cut(s)	267, 670, 690, 954
LmnI	GCTCC	4 cut(s)	342, 641, 844, 1075
Lsp1109I	GCAGC	4 cut(s)	415, 478, 1126, 1129
LweI	GCATC	3 cut(s)	895, 932, 990
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	2 cut(s)	28, 172
MaeIII	GTNAC	4 cut(s)	392, 473, 854, 1012
MalI	GATC	4 cut(s)	269, 672, 692, 956
MboI	GATC	4 cut(s)	267, 670, 690, 954
MboII	GAAGA	5 cut(s)	212, 382, 925, 960, 1130
MfeI	CAATTG	1 cut(s)	711
MflI	RGATCY	1 cut(s)	954
MhlI	GDGCHC	5 cut(s)	83, 224, 339, 592, 646
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	6 cut(s)	16, 147, 486, 711, 888, 991
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	820
Mox20I	TGGCCA	1 cut(s)	74
Mph1103I	ATGCAT	1 cut(s)	947
MroXI	GAANNNNTTC	2 cut(s)	294, 888
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	4 cut(s)	191, 378, 831, 839
MslI	CAYNNNNRTG	3 cut(s)	159, 290, 402
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	830
MspI	CCGG	3 cut(s)	780, 909, 1089
MspR9I	CCNGG	6 cut(s)	6, 344, 781, 849, 910, 1090
MunI	CAATTG	1 cut(s)	711
Mva1269I	GAATGC	1 cut(s)	1050
MvaI	CCWGG	3 cut(s)	6, 344, 849
MwoI	GCNNNNNNNGC	2 cut(s)	458, 942
NciI	CCSGG	3 cut(s)	781, 910, 1090
NcoI	CCATGG	1 cut(s)	397
NdeI	CATATG	1 cut(s)	721
NdeII	GATC	4 cut(s)	267, 670, 690, 954
NlaIII	CATG	6 cut(s)	158, 229, 327, 401, 407, 1105
NlaIV	GGNNCC	3 cut(s)	138, 784, 846
NmeAIII	GCCGAG	2 cut(s)	389, 663
NmuCI	GTSAC	1 cut(s)	1012
NsiI	ATGCAT	1 cut(s)	947
NspI	RCATGY	2 cut(s)	158, 327
PaeI	GCATGC	1 cut(s)	327
PctI	GAATGC	1 cut(s)	1050
PdmI	GAANNNNTTC	2 cut(s)	294, 888
PfeI	GAWTC	3 cut(s)	410, 820, 1128
PkrI	GCNGC	5 cut(s)	430, 493, 794, 1141, 1144
PleI	GAGTC	1 cut(s)	820
PpsI	GAGTC	1 cut(s)	820
Ppu21I	YACGTR	2 cut(s)	29, 173
PpuMI	RGGWCCY	2 cut(s)	137, 783
Psp5II	RGGWCCY	2 cut(s)	137, 783
Psp6I	CCWGG	3 cut(s)	4, 342, 847
PspFI	CCCAGC	1 cut(s)	920
PspGI	CCWGG	3 cut(s)	4, 342, 847
PspN4I	GGNNCC	3 cut(s)	138, 784, 846
PspPI	GGNCC	5 cut(s)	137, 346, 764, 783, 979
PspPPI	RGGWCCY	2 cut(s)	137, 783
PstI	CTGCAG	2 cut(s)	817, 1147
PstNI	CAGNNNCTG	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	954
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	5 cut(s)	27, 171, 175, 316, 773
RsaNI	GTAC	5 cut(s)	26, 170, 174, 315, 772
RseI	CAYNNNNRTG	3 cut(s)	159, 290, 402
SaqAI	TTAA	4 cut(s)	191, 378, 831, 839
SatI	GCNGC	5 cut(s)	429, 492, 793, 1140, 1143
Sau3AI	GATC	4 cut(s)	267, 670, 690, 954
Sau96I	GGNCC	5 cut(s)	137, 346, 764, 783, 979
SchI	GAGTC	1 cut(s)	820
ScrFI	CCNGG	6 cut(s)	6, 344, 781, 849, 910, 1090
SduI	GDGCHC	5 cut(s)	83, 224, 339, 592, 646
SfaNI	GCATC	3 cut(s)	895, 932, 990
SfcI	CTRYAG	2 cut(s)	813, 1143
SinI	GGWCC	3 cut(s)	137, 764, 783
SmiMI	CAYNNNNRTG	3 cut(s)	159, 290, 402
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
SnaBI	TACGTA	1 cut(s)	173
SphI	GCATGC	1 cut(s)	327
Sse9I	AATT	6 cut(s)	16, 147, 486, 711, 888, 991
SsiI	CCGC	6 cut(s)	340, 625, 702, 726, 792, 936
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	6 cut(s)	4, 342, 779, 847, 908, 1088
StyI	CCWWGG	2 cut(s)	75, 397
TaaI	ACNGT	4 cut(s)	587, 771, 1018, 1080
TaiI	ACGT	2 cut(s)	31, 175
TaqI	TCGA	2 cut(s)	298, 504
TasI	AATT	6 cut(s)	16, 147, 486, 711, 888, 991
TauI	GCSGC	1 cut(s)	795
TfiI	GAWTC	3 cut(s)	410, 820, 1128
Tru1I	TTAA	4 cut(s)	191, 378, 831, 839
Tru9I	TTAA	4 cut(s)	191, 378, 831, 839
TscAI	CASTG	3 cut(s)	364, 978, 1023
TseFI	GTSAC	1 cut(s)	1012
TseI	GCWGC	4 cut(s)	428, 491, 1139, 1142
Tsp45I	GTSAC	1 cut(s)	1012
TspDTI	ATGAA	4 cut(s)	213, 221, 402, 621
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	3 cut(s)	364, 978, 1023
Vha464I	CTTAAG	1 cut(s)	830
VneI	GTGCAC	1 cut(s)	220
VpaK11BI	GGWCC	3 cut(s)	137, 764, 783
XapI	RAATTY	2 cut(s)	16, 991
XbaI	TCTAGA	1 cut(s)	233
XceI	RCATGY	2 cut(s)	158, 327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	1062
XmnI	GAANNNNTTC	2 cut(s)	294, 888
XspI	CTAG	1 cut(s)	234
Zsp2I	ATGCAT	1 cut(s)	947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.