AT5G63570

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
25451800 .. 25453845
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63570.2

Sequence Viewer

Length: 1425 bp
ATGTCGGCGACGCTTACAGGATCGGGAACTGCTTTGGGGTTTTCGTGTTCCTCGAAGATCTCGAAAAGAGTTTCTTCTTCACCAGCTTCTAACCGATGCTGCATCAAGATGTCTGTTTCCGTCGACGAGAAGAAGAAAAGTTTCAGTCTTCAGAAATCTGAGGAAGCTTTCAATGCTGCTAAGAATCTAATGCCTGGAGGTGTGAATTCCCCTGTTCGAGCATTCAAATCCGTTGGTGGACAACCTGTTTTGATTGATTCTGTTAAAGGCTCAAAAATGTGGGACATTGATGGAAATGAGTATATTGACTACGTTGGCTCTTGGGGACCTGCTATTATTGGCCATGCTGATGACGAGGTTCTTGCGGCTCTAGCTGAGACGATGAAGAAAGGAACAAGCTTTGGTGCTCCTTGTCTCTTGGAGAATGTTTTAGCTGAGATGGTTATATCAGCTGTTCCCAGCATTGAAATGGTTCGGTTTGTTAATTCTGGTACTGAAGCGTGTATGGGTGTGCTTCGTCTTGCCAGAGCTTTCACTAACAAAGAGAAGTTCATTAAGTTTGAAGGGTGTTATCACGGTCATGCTAACGCCTTCCTTGTTAAAGCTGGTAGTGGTGTTGCCACTTTGGGGCTACCGGACTCTCCAGGTGTCCCTAAAGCAGCTACTTCAGATACTTTAACAGCTCCGTACAATGATCTTGAAGCTGTTGAGAAGCTCTTTGCTGCGCATAAAGGGGAGATTTCTGCGGTAATTCTCGAACCTGTTGTTGGTAACTCCGGATTCATCCCTCCTACTCCGGAATTCATCAACGGTTTACGCCAGCTTACTAAAGACAATGGTGTTCTTCTCATCTTCGATGAAGTCATGACTGGATTTCGTCTAGCCTATGGTGGAGCCCAAGAATACTTTGGAATCACGCCTGATCTAACTACTCTTGGTAAAATTATTGGTGGGGGTCTTCCCGTGGGAGCATACGGTGGTAGACGTGATATTATGGAGATGGTTGCTCCCGCTGGACCAATGTACCAAGCCGGGACTCTAAGTGGTAATCCGCTGGCAATGACTGCAGGGATTCACACGCTGAAGCGGCTAAAGCAGGCAGGAACATATGAGTATTTAGACAAGATCACGAAGGAACTAACCAACGGAATCTTAGAAGCCGGAAAGAAAACCGGGCATCCAATGTGCGGGGGTTACATAAGCGGTATGTTTGGATTCTTTTTCGCAGAAGGACCGGTTTACAACTTTGCAGACTCAAAGAAGAGCGACACAGAGAAGTTTGGTAGGTTTTTCAGGGGAATGTTGGAAGAAGGTGTTTACTTTGCACCGTCTCAGTTTGAGGCCGGGTTTACGAGCTTGGCTCACACTCCCGAGGATATACAGTTAACAATTGCTGCGGCTGAGAGGGTACTGAGTAGGATCTAG

Protein Analysis

474

Amino Acids

50.37

Weight (kDa)

6.42

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 19 - 328 7.6e-73 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011111)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 726
Acc36I ACCTGC 1 cut(s) 337
AccI GTMKAC 2 cut(s) 123, 982
AccIII TCCGGA 2 cut(s) 776, 796
AciI CCGC 8 cut(s) 365, 746, 1011, 1052, 1087, 1188, 1203, 1397
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 2 cut(s) 205, 800
AcuI CTGAAG 4 cut(s) 134, 516, 651, 1103
AfaI GTAC 4 cut(s) 493, 689, 1025, 1410
AfiI CCNNNNNNNGG 3 cut(s) 627, 767, 1187
AgeI ACCGGT 1 cut(s) 1234
AgsI TTSAA 5 cut(s) 172, 226, 467, 563, 701
AjiI CACGTC 1 cut(s) 986
AjnI CCWGG 2 cut(s) 193, 643
AjuI GAANNNNNNNTTGG 2 cut(s) 750, 782
Alw21I GWGCWC 1 cut(s) 409
Alw26I GTCTC 3 cut(s) 371, 419, 1335
AlwI GGATC 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 1370
Aor13HI TCCGGA 2 cut(s) 776, 796
AoxI GGCC 2 cut(s) 340, 1341
ApeKI GCWGC 5 cut(s) 99, 176, 659, 722, 1394
ApoI RAATTY 2 cut(s) 205, 800
AsiGI ACCGGT 1 cut(s) 1234
Asp700I GAANNNNTTC 2 cut(s) 140, 471
AspLEI GCGC 1 cut(s) 727
AspS9I GGNCC 3 cut(s) 326, 1016, 1232
AsuC2I CCSGG 3 cut(s) 1033, 1174, 1345
AsuHPI GGTGA 1 cut(s) 72
AvaI CYCGRG 1 cut(s) 1370
AvaII GGWCC 3 cut(s) 326, 1016, 1232
BaeI ACNNNNGTAYC 2 cut(s) 1007, 1040
BalI TGGCCA 1 cut(s) 342
BanII GRGCYC 1 cut(s) 898
BbsI GAAGAC 2 cut(s) 140, 950
Bbv12I GWGCWC 1 cut(s) 409
BbvI GCAGC 5 cut(s) 86, 163, 671, 709, 1381
BccI CCATC 3 cut(s) 284, 433, 994
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 2 cut(s) 195, 645
BcnI CCSGG 3 cut(s) 1033, 1174, 1345
BcoDI GTCTC 3 cut(s) 371, 419, 1335
BfaI CTAG 3 cut(s) 371, 881, 1423
BfmI CTRYAG 1 cut(s) 1065
BfuAI ACCTGC 1 cut(s) 337
BglII AGATCT 1 cut(s) 57
BisI GCNGC 8 cut(s) 100, 177, 366, 660, 723, 1088, 1395, 1398
BlsI GCNGC 8 cut(s) 101, 178, 367, 661, 724, 1089, 1396, 1399
Bme1390I CCNGG 5 cut(s) 195, 645, 1033, 1174, 1345
Bme18I GGWCC 3 cut(s) 326, 1016, 1232
BmeT110I CYCGRG 1 cut(s) 1370
BmgBI CACGTC 1 cut(s) 986
BmgT120I GGNCC 3 cut(s) 326, 1016, 1232
BmiI GGNNCC 2 cut(s) 327, 895
BmrFI CCNGG 5 cut(s) 195, 645, 1033, 1174, 1345
BmsI GCATC 3 cut(s) 86, 111, 1186
BpiI GAAGAC 2 cut(s) 140, 950
BplI GAGNNNNNCTC 2 cut(s) 1345, 1377
BpmI CTGGAG 2 cut(s) 216, 627
BpuMI CCSGG 3 cut(s) 1033, 1174, 1345
BsaJI CCNNGG 2 cut(s) 963, 1371
BsaWI WCCGGW 4 cut(s) 634, 776, 796, 1234
Bsc4I CCNNNNNNNGG 3 cut(s) 627, 767, 1187
Bse118I RCCGGY 1 cut(s) 1234
Bse1I ACTGG 1 cut(s) 874
Bse3DI GCAATG 1 cut(s) 1065
BseAI TCCGGA 2 cut(s) 776, 796
BseBI CCWGG 2 cut(s) 195, 645
BseDI CCNNGG 2 cut(s) 963, 1371
BseGI GGATG 2 cut(s) 783, 1177
BseLI CCNNNNNNNGG 3 cut(s) 627, 767, 1187
BseMI GCAATG 1 cut(s) 1065
BseMII CTCAG 6 cut(s) 150, 366, 426, 1346, 1392, 1403
BseNI ACTGG 1 cut(s) 874
BseXI GCAGC 5 cut(s) 86, 163, 671, 709, 1381
BseYI CCCAGC 1 cut(s) 458
BshFI GGCC 2 cut(s) 342, 1343
BshTI ACCGGT 1 cut(s) 1234
BsiHKAI GWGCWC 1 cut(s) 409
BsiHKCI CYCGRG 1 cut(s) 1370
BsiSI CCGG 8 cut(s) 635, 777, 797, 1032, 1161, 1173, 1235, 1344
BslFI GGGAC 4 cut(s) 296, 339, 635, 1048
BslI CCNNNNNNNGG 3 cut(s) 627, 767, 1187
BsmAI GTCTC 3 cut(s) 371, 419, 1335
BsmBI CGTCTC 2 cut(s) 371, 1335
BsmFI GGGAC 4 cut(s) 296, 339, 635, 1048
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 2 cut(s) 342, 1343
BsoBI CYCGRG 1 cut(s) 1370
Bsp1286I GDGCHC 2 cut(s) 409, 898
Bsp13I TCCGGA 2 cut(s) 776, 796
Bsp143I GATC 6 cut(s) 20, 57, 694, 922, 1125, 1419
BspACI CCGC 8 cut(s) 365, 746, 1011, 1052, 1087, 1188, 1203, 1397
BspANI GGCC 2 cut(s) 342, 1343
BspCNI CTCAG 6 cut(s) 151, 367, 427, 1345, 1393, 1404
BspEI TCCGGA 2 cut(s) 776, 796
BspHI TCATGA 1 cut(s) 864
BspLI GGNNCC 2 cut(s) 327, 895
BspMAI CTGCAG 1 cut(s) 1069
BspMI ACCTGC 1 cut(s) 337
BspPI GGATC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 1256
BsrDI GCAATG 1 cut(s) 1065
BsrFI RCCGGY 1 cut(s) 1234
BsrI ACTGG 1 cut(s) 874
BssAI RCCGGY 1 cut(s) 1234
BssECI CCNNGG 2 cut(s) 963, 1371
BssMI GATC 6 cut(s) 20, 57, 694, 922, 1125, 1419
Bst2UI CCWGG 2 cut(s) 195, 645
Bst4CI ACNGT 5 cut(s) 578, 812, 977, 1329, 1383
Bst6I CTCTTC 1 cut(s) 1256
BstAPI GCANNNNNTGC 1 cut(s) 1064
BstC8I GCNNGC 3 cut(s) 821, 1056, 1098
BstDEI CTNAG 9 cut(s) 159, 180, 375, 435, 1040, 1153, 1332, 1401, 1412
BstDSI CCRYGG 1 cut(s) 963
BstF5I GGATG 2 cut(s) 783, 1177
BstHHI GCGC 1 cut(s) 727
BstKTI GATC 6 cut(s) 23, 60, 697, 925, 1128, 1422
BstMAI GTCTC 3 cut(s) 371, 419, 1335
BstMBI GATC 6 cut(s) 20, 57, 694, 922, 1125, 1419
BstMWI GCNNNNNNNGC 5 cut(s) 173, 371, 1064, 1087, 1093
BstNI CCWGG 2 cut(s) 195, 645
BstSCI CCNGG 5 cut(s) 193, 643, 1031, 1172, 1343
BstSFI CTRYAG 1 cut(s) 1065
BstV1I GCAGC 5 cut(s) 86, 163, 671, 709, 1381
BstV2I GAAGAC 2 cut(s) 140, 950
BstX2I RGATCY 2 cut(s) 57, 1419
BstYI RGATCY 2 cut(s) 57, 1419
BsuRI GGCC 2 cut(s) 342, 1343
BtgI CCRYGG 1 cut(s) 963
BtrI CACGTC 1 cut(s) 986
BtsCI GGATG 2 cut(s) 783, 1177
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 3 cut(s) 821, 1056, 1098
CciI TCATGA 1 cut(s) 864
CfoI GCGC 1 cut(s) 727
Cfr10I RCCGGY 1 cut(s) 1234
Cfr13I GGNCC 3 cut(s) 326, 1016, 1232
CseI GACGC 1 cut(s) 19
Csp6I GTAC 4 cut(s) 492, 688, 1024, 1409
CspAI ACCGGT 1 cut(s) 1234
CviAII CATG 3 cut(s) 344, 581, 865
CviQI GTAC 4 cut(s) 492, 688, 1024, 1409
DdeI CTNAG 9 cut(s) 159, 180, 375, 435, 1040, 1153, 1332, 1401, 1412
DpnI GATC 6 cut(s) 22, 59, 696, 924, 1127, 1421
DpnII GATC 6 cut(s) 20, 57, 694, 922, 1125, 1419
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 1256
EarI CTCTTC 1 cut(s) 1256
Eco24I GRGCYC 1 cut(s) 898
Eco47I GGWCC 3 cut(s) 326, 1016, 1232
Eco57I CTGAAG 4 cut(s) 134, 516, 651, 1103
Eco88I CYCGRG 1 cut(s) 1370
EcoO109I RGGNCCY 1 cut(s) 326
EcoRI GAATTC 2 cut(s) 205, 800
EcoRII CCWGG 2 cut(s) 193, 643
EcoT38I GRGCYC 1 cut(s) 898
Esp3I CGTCTC 2 cut(s) 371, 1335
FaeI CATG 3 cut(s) 347, 584, 868
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FaqI GGGAC 4 cut(s) 296, 339, 635, 1048
FatI CATG 3 cut(s) 343, 580, 864
FauI CCCGC 2 cut(s) 1018, 1181
FauNDI CATATG 1 cut(s) 1108
FblI GTMKAC 2 cut(s) 123, 982
Fnu4HI GCNGC 8 cut(s) 100, 177, 366, 660, 723, 1088, 1395, 1398
FokI GGATG 2 cut(s) 770, 1164
FriOI GRGCYC 1 cut(s) 898
Fsp4HI GCNGC 8 cut(s) 100, 177, 366, 660, 723, 1088, 1395, 1398
FspBI CTAG 3 cut(s) 371, 881, 1423
FspI TGCGCA 1 cut(s) 726
GlaI GCGC 1 cut(s) 726
GluI GCNGC 8 cut(s) 100, 177, 366, 660, 723, 1088, 1395, 1398
GsaI CCCAGC 1 cut(s) 462
GsuI CTGGAG 2 cut(s) 216, 627
HaeIII GGCC 2 cut(s) 342, 1343
HapII CCGG 8 cut(s) 635, 777, 797, 1032, 1161, 1173, 1235, 1344
HgaI GACGC 1 cut(s) 19
HhaI GCGC 1 cut(s) 727
Hin1II CATG 3 cut(s) 347, 584, 868
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HincII GTYRAC 2 cut(s) 124, 1386
HindII GTYRAC 2 cut(s) 124, 1386
HindIII AAGCTT 2 cut(s) 165, 397
HpaI GTTAAC 1 cut(s) 1386
HpaII CCGG 8 cut(s) 635, 777, 797, 1032, 1161, 1173, 1235, 1344
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 8 cut(s) 124, 239, 815, 983, 1240, 1318, 1350, 1386
Hpy188I TCNGA 3 cut(s) 153, 160, 670
Hpy8I GTNNAC 8 cut(s) 124, 239, 815, 983, 1240, 1318, 1350, 1386
Hpy99I CGWCG 3 cut(s) 13, 125, 128
HpyAV CCTTC 5 cut(s) 557, 601, 1126, 1223, 1304
HpyCH4III ACNGT 5 cut(s) 578, 812, 977, 1329, 1383
HpyCH4IV ACGT 2 cut(s) 312, 985
HpyCH4V TGCA 4 cut(s) 102, 1067, 1250, 1325
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 371, 1064, 1087, 1093
HpyF3I CTNAG 9 cut(s) 159, 180, 375, 435, 1040, 1153, 1332, 1401, 1412
HpySE526I ACGT 2 cut(s) 312, 985
Hsp92II CATG 3 cut(s) 347, 584, 868
HspAI GCGC 1 cut(s) 725
Kpn2I TCCGGA 2 cut(s) 776, 796
KspAI GTTAAC 1 cut(s) 1386
Kzo9I GATC 6 cut(s) 20, 57, 694, 922, 1125, 1419
LguI GCTCTTC 1 cut(s) 1256
LmnI GCTCC 5 cut(s) 412, 688, 893, 968, 1012
Lsp1109I GCAGC 5 cut(s) 86, 163, 671, 709, 1381
LweI GCATC 3 cut(s) 86, 111, 1186
MaeI CTAG 3 cut(s) 371, 881, 1423
MaeII ACGT 2 cut(s) 312, 985
MaeIII GTNAC 2 cut(s) 770, 1193
MalI GATC 6 cut(s) 22, 59, 696, 924, 1127, 1421
MboI GATC 6 cut(s) 20, 57, 694, 922, 1125, 1419
MfeI CAATTG 1 cut(s) 1389
MflI RGATCY 2 cut(s) 57, 1419
MhlI GDGCHC 2 cut(s) 409, 898
MlsI TGGCCA 1 cut(s) 342
MluCI AATT 6 cut(s) 205, 484, 750, 800, 942, 1389
MluNI TGGCCA 1 cut(s) 342
MlyI GAGTC 3 cut(s) 632, 1030, 1247
MmeI TCCRAC 1 cut(s) 1284
MnlI CCTC 8 cut(s) 61, 154, 191, 349, 798, 1333, 1366, 1398
Mox20I TGGCCA 1 cut(s) 342
MroI TCCGGA 2 cut(s) 776, 796
MroXI GAANNNNTTC 2 cut(s) 140, 471
MscI TGGCCA 1 cut(s) 342
MseI TTAA 6 cut(s) 264, 483, 555, 600, 677, 1385
MslI CAYNNNNRTG 4 cut(s) 107, 348, 467, 579
Msp20I TGGCCA 1 cut(s) 342
MspA1I CMGCKG 3 cut(s) 452, 1013, 1054
MspI CCGG 8 cut(s) 635, 777, 797, 1032, 1161, 1173, 1235, 1344
MspR9I CCNGG 5 cut(s) 195, 645, 1033, 1174, 1345
MunI CAATTG 1 cut(s) 1389
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 2 cut(s) 195, 645
MwoI GCNNNNNNNGC 5 cut(s) 173, 371, 1064, 1087, 1093
NciI CCSGG 3 cut(s) 1033, 1174, 1345
NdeI CATATG 1 cut(s) 1108
NdeII GATC 6 cut(s) 20, 57, 694, 922, 1125, 1419
NlaIII CATG 3 cut(s) 347, 584, 868
NlaIV GGNNCC 2 cut(s) 327, 895
NsbI TGCGCA 1 cut(s) 726
PagI TCATGA 1 cut(s) 864
PciSI GCTCTTC 1 cut(s) 1256
PcsI WCGNNNNNNNCGW 2 cut(s) 50, 59
PctI GAATGC 1 cut(s) 221
PdmI GAANNNNTTC 2 cut(s) 140, 471
PfeI GAWTC 7 cut(s) 184, 257, 780, 912, 1072, 1149, 1215
PinAI ACCGGT 1 cut(s) 1234
PkrI GCNGC 8 cut(s) 101, 178, 367, 661, 724, 1089, 1396, 1399
PleI GAGTC 3 cut(s) 632, 1030, 1247
PpsI GAGTC 3 cut(s) 632, 1030, 1247
PpuMI RGGWCCY 1 cut(s) 326
Psp5II RGGWCCY 1 cut(s) 326
Psp6I CCWGG 2 cut(s) 193, 643
PspFI CCCAGC 1 cut(s) 458
PspGI CCWGG 2 cut(s) 193, 643
PspN4I GGNNCC 2 cut(s) 327, 895
PspPI GGNCC 3 cut(s) 326, 1016, 1232
PspPPI RGGWCCY 1 cut(s) 326
PstI CTGCAG 1 cut(s) 1069
PsuI RGATCY 2 cut(s) 57, 1419
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 4 cut(s) 493, 689, 1025, 1410
RsaNI GTAC 4 cut(s) 492, 688, 1024, 1409
RseI CAYNNNNRTG 4 cut(s) 107, 348, 467, 579
SalI GTCGAC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 1256
SaqAI TTAA 6 cut(s) 264, 483, 555, 600, 677, 1385
SatI GCNGC 8 cut(s) 100, 177, 366, 660, 723, 1088, 1395, 1398
Sau3AI GATC 6 cut(s) 20, 57, 694, 922, 1125, 1419
Sau96I GGNCC 3 cut(s) 326, 1016, 1232
SchI GAGTC 3 cut(s) 632, 1030, 1247
ScrFI CCNGG 5 cut(s) 195, 645, 1033, 1174, 1345
SduI GDGCHC 2 cut(s) 409, 898
SfaNI GCATC 3 cut(s) 86, 111, 1186
SfcI CTRYAG 1 cut(s) 1065
SgrDI CGTCGACG 1 cut(s) 122
SinI GGWCC 3 cut(s) 326, 1016, 1232
SmiMI CAYNNNNRTG 4 cut(s) 107, 348, 467, 579
Sse9I AATT 6 cut(s) 205, 484, 750, 800, 942, 1389
SsiI CCGC 8 cut(s) 365, 746, 1011, 1052, 1087, 1188, 1203, 1397
SspMI CTAG 3 cut(s) 371, 881, 1423
StyD4I CCNGG 5 cut(s) 193, 643, 1031, 1172, 1343
TaaI ACNGT 5 cut(s) 578, 812, 977, 1329, 1383
TaiI ACGT 2 cut(s) 315, 988
TaqI TCGA 6 cut(s) 53, 62, 123, 217, 756, 855
TasI AATT 6 cut(s) 205, 484, 750, 800, 942, 1389
TauI GCSGC 3 cut(s) 368, 1090, 1400
TfiI GAWTC 7 cut(s) 184, 257, 780, 912, 1072, 1149, 1215
Tru1I TTAA 6 cut(s) 264, 483, 555, 600, 677, 1385
Tru9I TTAA 6 cut(s) 264, 483, 555, 600, 677, 1385
TseI GCWGC 5 cut(s) 99, 176, 659, 722, 1394
TspDTI ATGAA 5 cut(s) 398, 541, 772, 793, 873
TspGWI ACGGA 4 cut(s) 109, 220, 675, 1161
VpaK11BI GGWCC 3 cut(s) 326, 1016, 1232
XapI RAATTY 2 cut(s) 205, 800
XcmI CCANNNNNNNNNTGG 2 cut(s) 466, 905
XmiI GTMKAC 2 cut(s) 123, 982
XmnI GAANNNNTTC 2 cut(s) 140, 471
XspI CTAG 3 cut(s) 371, 881, 1423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.