Rh7DG104600

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011111
Physical Location & Seq
Reverse (-)
8901081 .. 8904346
3266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG104600.1

Sequence Viewer

Length: 1044 bp
ATGAAGAAAGGAACAAGCTTTGGTGCACCTTGTCTTCTAGAAAATGTTCTGGCAAAAATGGTGATTGAAGCTGTTCCAAGCATTGAAATGGTTCGGTTTGTTAACTCAGGCACAGAAGCATGTATGGGTGTGCTTCGTCTGGCCCGTGCATATACTGGCCGAGGGAAGATAATTAAGTTTGAAGGCTGTTACCATGGCCATGCTGATCCATTCCTTGTCAAGGCTGGTAGTGGGGTTGCCACATTAGGACTTCCAGACTCACCAGGTGTTCCTAAAGCAGCGACTATTGATACGCTAACAGCCCCTTACAATGACTTGTCAGCCGTGGAAGCTCTTTTTCAAAGTAACAAAGGAGAAGTTGCAGCAATCATCCTTGAACCAGTTGTTGGGAACTCTGGTTTTATCACTCCTACCCCAGATTTCCTTAATGGAATACGCAAACTCACCAAAGAACATGGTGCTCTCCTCATTTTTGATGAAGTGATGACTGGGTTCCGTTTGTCTTATGGTGGAGCTCAGGAGTATTTTGGTATTACTCCTGATTTAACAACACTTGGGAAGATCATTGGTGGCGGTCTACCAGTTGGTGCATATGGTGGAAGGAGGGAGATGATGGAAATGGTGGCACCAGCAGGGCCAATGTATCAGGCTGGGACCTTGAGTGGTAACCCGCTAGCAATGACTGCTGGAATTCACACCCTTGAGAGGTTGAAGGAGCCAGGCAGCTATGAACACCTGAACAAGATTACAGGTGACCTTATTCAAGGTATCATAGATGCTGGGAAGAAGGCTGGACATGCAATTTGTGGTGGGTATATCAGCGGGATGTTTGGATTCTTCTTCACTGAAGGGCCTGTTTACAACTTTGATGATGCAAAAAAGAGTGATACCGCAAAGTTTGGAAGGTTTTATAGGGGAATGCTGGAGGAAGGTGTATACTTTGCTCCCTCACAGTTTGAGGCTGGGTTTACAAGCTTGGCTCATACTCCTGAGGATATCCAAAATACAATAGCTGCTGCAGAGAAAGTTTTAAGGCAGATATAG

Protein Analysis

347

Amino Acids

36.91

Weight (kDa)

6.01

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 17 - 264 5.3e-57 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48730 AT5G63570 AT5G63570
fragaria_vesca FvH4_5g08950 FvH4_5g08950
malus_domestica MD06G1136900.v1.1 MD14G1151700.v1.1
prunus_persica Prupe.5G146800_v2.0.a1 Prupe.5G146800_v2.0.a1
pyrus_communis pycom06g12820
rosa_chinensis RchiOBHm_Chr7g0189421
rosa_laevigata RLG00000003783 RLG00000004612
rosa_multiflora Rmu_sc0001282.1_g000016
rosa_roxburghii Rroxscaffold_3G00256580 Rroxscaffold_3G00265490
rosa_rugosa Rorug06G0497700
rosa_samantha Rh7BG105200 Rh7DG104600
rosa_wichuraiana Rw7G008870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 625
AccB7I CCANNNNNTGG 1 cut(s) 386
AccI GTMKAC 2 cut(s) 577, 936
AciI CCGC 4 cut(s) 573, 671, 822, 891
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 2 cut(s) 157, 196
AcsI RAATTY 1 cut(s) 690
AcuI CTGAAG 1 cut(s) 867
AdeI CACNNNGTG 1 cut(s) 266
AfiI CCNNNNNNNGG 3 cut(s) 220, 386, 705
AgsI TTSAA 7 cut(s) 68, 86, 182, 341, 377, 712, 764
AjnI CCWGG 2 cut(s) 262, 718
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
AluBI AGCT 7 cut(s) 18, 71, 332, 515, 726, 975, 1013
AluI AGCT 7 cut(s) 18, 71, 332, 515, 726, 975, 1013
Alw21I GWGCWC 3 cut(s) 28, 463, 517
Alw44I GTGCAC 1 cut(s) 24
AlwI GGATC 1 cut(s) 200
AoxI GGCC 5 cut(s) 141, 157, 196, 635, 851
ApaLI GTGCAC 1 cut(s) 24
ApeKI GCWGC 5 cut(s) 278, 362, 723, 1013, 1016
ApoI RAATTY 1 cut(s) 690
ArsI GACNNNNNNTTYG 2 cut(s) 786, 818
Asp700I GAANNNNTTC 3 cut(s) 45, 72, 90
AspS9I GGNCC 4 cut(s) 142, 635, 654, 851
AsuHPI GGTGA 4 cut(s) 73, 252, 436, 764
AsuNHI GCTAGC 1 cut(s) 673
AvaII GGWCC 1 cut(s) 654
AxyI CCTNAGG 1 cut(s) 990
BaeGI GKGCMC 1 cut(s) 28
BalI TGGCCA 1 cut(s) 198
BanI GGYRCC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 3 cut(s) 28, 463, 517
BbvI GCAGC 5 cut(s) 290, 374, 735, 1000, 1003
BccI CCATC 1 cut(s) 607
BceAI ACGGC 1 cut(s) 308
BciT130I CCWGG 2 cut(s) 264, 720
BfaI CTAG 2 cut(s) 38, 674
BfmI CTRYAG 1 cut(s) 1017
BisI GCNGC 5 cut(s) 279, 363, 724, 1014, 1017
BlsI GCNGC 5 cut(s) 280, 364, 725, 1015, 1018
Bme1390I CCNGG 2 cut(s) 264, 720
Bme18I GGWCC 1 cut(s) 654
BmgT120I GGNCC 4 cut(s) 142, 635, 654, 851
BmiI GGNNCC 4 cut(s) 494, 627, 655, 717
BmrFI CCNGG 2 cut(s) 264, 720
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 2 cut(s) 766, 862
BmtI GCTAGC 1 cut(s) 677
BmuI ACTGGG 1 cut(s) 498
BpiI GAAGAC 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 944
Bpu10I CCTNAGC 1 cut(s) 516
BpuEI CTTGAG 2 cut(s) 679, 722
BsaJI CCNNGG 3 cut(s) 160, 193, 324
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 386, 705
Bse1I ACTGG 4 cut(s) 160, 380, 493, 581
Bse21I CCTNAGG 1 cut(s) 990
Bse3DI GCAATG 1 cut(s) 684
BseBI CCWGG 2 cut(s) 264, 720
BseDI CCNNGG 3 cut(s) 160, 193, 324
BseGI GGATG 2 cut(s) 369, 831
BseLI CCNNNNNNNGG 3 cut(s) 220, 386, 705
BseMI GCAATG 1 cut(s) 684
BseMII CTCAG 3 cut(s) 120, 530, 981
BseNI ACTGG 4 cut(s) 160, 380, 493, 581
BseRI GAGGAG 1 cut(s) 455
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 5 cut(s) 290, 374, 735, 1000, 1003
BseYI CCCAGC 3 cut(s) 650, 779, 962
BshFI GGCC 5 cut(s) 143, 159, 198, 637, 853
BshNI GGYRCC 1 cut(s) 625
BsiHKAI GWGCWC 3 cut(s) 28, 463, 517
BslFI GGGAC 1 cut(s) 667
BslI CCNNNNNNNGG 3 cut(s) 220, 386, 705
BsmFI GGGAC 1 cut(s) 667
BsmI GAATGC 1 cut(s) 924
BsnI GGCC 5 cut(s) 143, 159, 198, 637, 853
Bsp1286I GDGCHC 3 cut(s) 28, 463, 517
Bsp143I GATC 2 cut(s) 205, 561
Bsp19I CCATGG 1 cut(s) 193
BspACI CCGC 4 cut(s) 573, 671, 822, 891
BspANI GGCC 5 cut(s) 143, 159, 198, 637, 853
BspCNI CTCAG 3 cut(s) 119, 529, 982
BspLI GGNNCC 4 cut(s) 494, 627, 655, 717
BspMAI CTGCAG 1 cut(s) 1021
BspOI GCTAGC 1 cut(s) 677
BspPI GGATC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 625
BsrDI GCAATG 1 cut(s) 684
BsrI ACTGG 4 cut(s) 160, 380, 493, 581
BssECI CCNNGG 3 cut(s) 160, 193, 324
BssMI GATC 2 cut(s) 205, 561
BssNAI GTATAC 1 cut(s) 937
BssT1I CCWWGG 1 cut(s) 193
Bst1107I GTATAC 1 cut(s) 937
Bst2UI CCWGG 2 cut(s) 264, 720
Bst4CI ACNGT 1 cut(s) 954
BstAPI GCANNNNNTGC 1 cut(s) 683
BstC8I GCNNGC 1 cut(s) 675
BstDEI CTNAG 3 cut(s) 106, 516, 990
BstDSI CCRYGG 2 cut(s) 193, 324
BstEII GGTNACC 2 cut(s) 665, 752
BstENI CCTNNNNNAGG 1 cut(s) 218
BstF5I GGATG 2 cut(s) 369, 831
BstKTI GATC 2 cut(s) 208, 564
BstMBI GATC 2 cut(s) 205, 561
BstMWI GCNNNNNNNGC 3 cut(s) 329, 683, 797
BstNI CCWGG 2 cut(s) 264, 720
BstNSI RCATGY 2 cut(s) 123, 800
BstPI GGTNACC 2 cut(s) 665, 752
BstSCI CCNGG 2 cut(s) 262, 718
BstSFI CTRYAG 1 cut(s) 1017
BstSLI GKGCMC 1 cut(s) 28
BstV1I GCAGC 5 cut(s) 290, 374, 735, 1000, 1003
BstV2I GAAGAC 1 cut(s) 26
BstZ17I GTATAC 1 cut(s) 937
Bsu36I CCTNAGG 1 cut(s) 990
BsuRI GGCC 5 cut(s) 143, 159, 198, 637, 853
BtgI CCRYGG 2 cut(s) 193, 324
BtsCI GGATG 2 cut(s) 369, 831
BtsIMutI CAGTG 1 cut(s) 843
Cac8I GCNNGC 1 cut(s) 675
Cfr13I GGNCC 4 cut(s) 142, 635, 654, 851
CsiI ACCWGGT 1 cut(s) 262
CviAII CATG 5 cut(s) 120, 194, 200, 455, 797
DdeI CTNAG 3 cut(s) 106, 516, 990
DpnI GATC 2 cut(s) 207, 563
DpnII GATC 2 cut(s) 205, 561
DraIII CACNNNGTG 1 cut(s) 266
EaeI YGGCCR 2 cut(s) 157, 196
Ecl136II GAGCTC 1 cut(s) 515
Eco130I CCWWGG 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 517
Eco32I GATATC 1 cut(s) 997
Eco47I GGWCC 1 cut(s) 654
Eco53kI GAGCTC 1 cut(s) 515
Eco57I CTGAAG 1 cut(s) 867
Eco81I CCTNAGG 1 cut(s) 990
Eco91I GGTNACC 2 cut(s) 665, 752
EcoICRI GAGCTC 1 cut(s) 515
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoO109I RGGNCCY 2 cut(s) 654, 851
EcoO65I GGTNACC 2 cut(s) 665, 752
EcoRI GAATTC 1 cut(s) 690
EcoRII CCWGG 2 cut(s) 262, 718
EcoRV GATATC 1 cut(s) 997
EcoT14I CCWWGG 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 517
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 5 cut(s) 123, 197, 203, 458, 800
FaqI GGGAC 1 cut(s) 667
FatI CATG 5 cut(s) 119, 193, 199, 454, 796
FauI CCCGC 2 cut(s) 678, 815
FauNDI CATATG 1 cut(s) 592
FblI GTMKAC 2 cut(s) 577, 936
Fnu4HI GCNGC 5 cut(s) 279, 363, 724, 1014, 1017
FokI GGATG 2 cut(s) 356, 838
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 5 cut(s) 279, 363, 724, 1014, 1017
FspBI CTAG 2 cut(s) 38, 674
GluI GCNGC 5 cut(s) 279, 363, 724, 1014, 1017
GsaI CCCAGC 3 cut(s) 654, 783, 966
GsuI CTGGAG 1 cut(s) 944
HaeIII GGCC 5 cut(s) 143, 159, 198, 637, 853
Hin1II CATG 5 cut(s) 123, 197, 203, 458, 800
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 2 cut(s) 16, 973
HinfI GANTC 2 cut(s) 257, 834
HpaI GTTAAC 1 cut(s) 103
HphI GGTGA 4 cut(s) 73, 252, 436, 764
Hpy166II GTNNAC 6 cut(s) 26, 103, 578, 859, 937, 969
Hpy188III TCNNGA 5 cut(s) 38, 254, 518, 539, 989
Hpy8I GTNNAC 6 cut(s) 26, 103, 578, 859, 937, 969
HpyAV CCTTC 7 cut(s) 176, 594, 706, 781, 842, 897, 923
HpyCH4III ACNGT 1 cut(s) 954
HpyCH4V TGCA 7 cut(s) 26, 149, 362, 590, 800, 875, 1019
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 683, 797
HpyF3I CTNAG 3 cut(s) 106, 516, 990
Hsp92II CATG 5 cut(s) 123, 197, 203, 458, 800
KspAI GTTAAC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 205, 561
LmnI GCTCC 3 cut(s) 512, 715, 949
Lsp1109I GCAGC 5 cut(s) 290, 374, 735, 1000, 1003
LweI GCATC 2 cut(s) 766, 862
MabI ACCWGGT 1 cut(s) 262
MaeI CTAG 2 cut(s) 38, 674
MaeIII GTNAC 4 cut(s) 188, 344, 665, 752
MalI GATC 2 cut(s) 207, 563
MboI GATC 2 cut(s) 205, 561
MboII GAAGA 7 cut(s) 16, 26, 178, 571, 796, 829, 832
MhlI GDGCHC 3 cut(s) 28, 463, 517
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 3 cut(s) 171, 690, 801
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 8 cut(s) 155, 476, 597, 699, 919, 952, 958, 985
Mox20I TGGCCA 1 cut(s) 198
MroXI GAANNNNTTC 3 cut(s) 45, 72, 90
MscI TGGCCA 1 cut(s) 198
MseI TTAA 5 cut(s) 102, 174, 426, 545, 1031
MslI CAYNNNNRTG 2 cut(s) 86, 198
Msp20I TGGCCA 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 822
MspR9I CCNGG 2 cut(s) 264, 720
Mva1269I GAATGC 1 cut(s) 924
MvaI CCWGG 2 cut(s) 264, 720
MwoI GCNNNNNNNGC 3 cut(s) 329, 683, 797
NcoI CCATGG 1 cut(s) 193
NdeI CATATG 1 cut(s) 592
NdeII GATC 2 cut(s) 205, 561
NheI GCTAGC 1 cut(s) 673
NlaIII CATG 5 cut(s) 123, 197, 203, 458, 800
NlaIV GGNNCC 4 cut(s) 494, 627, 655, 717
NmeAIII GCCGAG 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 752
NspI RCATGY 2 cut(s) 123, 800
PcsI WCGNNNNNNNCGW 1 cut(s) 142
PctI GAATGC 1 cut(s) 924
PdmI GAANNNNTTC 3 cut(s) 45, 72, 90
PfeI GAWTC 1 cut(s) 834
PflMI CCANNNNNTGG 1 cut(s) 386
PkrI GCNGC 5 cut(s) 280, 364, 725, 1015, 1018
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 654
Psp124BI GAGCTC 1 cut(s) 517
Psp5II RGGWCCY 1 cut(s) 654
Psp6I CCWGG 2 cut(s) 262, 718
PspEI GGTNACC 2 cut(s) 665, 752
PspFI CCCAGC 3 cut(s) 650, 779, 962
PspGI CCWGG 2 cut(s) 262, 718
PspN4I GGNNCC 4 cut(s) 494, 627, 655, 717
PspPI GGNCC 4 cut(s) 142, 635, 654, 851
PspPPI RGGWCCY 1 cut(s) 654
PstI CTGCAG 1 cut(s) 1021
RseI CAYNNNNRTG 2 cut(s) 86, 198
SacI GAGCTC 1 cut(s) 517
SaqAI TTAA 5 cut(s) 102, 174, 426, 545, 1031
SatI GCNGC 5 cut(s) 279, 363, 724, 1014, 1017
Sau3AI GATC 2 cut(s) 205, 561
Sau96I GGNCC 4 cut(s) 142, 635, 654, 851
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 264, 720
SduI GDGCHC 3 cut(s) 28, 463, 517
SexAI ACCWGGT 1 cut(s) 262
SfaNI GCATC 2 cut(s) 766, 862
SfcI CTRYAG 1 cut(s) 1017
SinI GGWCC 1 cut(s) 654
SmiMI CAYNNNNRTG 2 cut(s) 86, 198
SmlI CTYRAG 2 cut(s) 658, 701
SmoI CTYRAG 2 cut(s) 658, 701
Sse9I AATT 3 cut(s) 171, 690, 801
SsiI CCGC 4 cut(s) 573, 671, 822, 891
SspMI CTAG 2 cut(s) 38, 674
SstI GAGCTC 1 cut(s) 517
StyD4I CCNGG 2 cut(s) 262, 718
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 954
TasI AATT 3 cut(s) 171, 690, 801
TfiI GAWTC 1 cut(s) 834
Tru1I TTAA 5 cut(s) 102, 174, 426, 545, 1031
Tru9I TTAA 5 cut(s) 102, 174, 426, 545, 1031
TscAI CASTG 1 cut(s) 850
TseFI GTSAC 1 cut(s) 752
TseI GCWGC 5 cut(s) 278, 362, 723, 1013, 1016
Tsp45I GTSAC 1 cut(s) 752
TspDTI ATGAA 3 cut(s) 17, 492, 744
TspGWI ACGGA 1 cut(s) 485
TspRI CASTG 1 cut(s) 850
Van91I CCANNNNNTGG 1 cut(s) 386
VneI GTGCAC 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 654
XagI CCTNNNNNAGG 1 cut(s) 218
XapI RAATTY 1 cut(s) 690
XbaI TCTAGA 1 cut(s) 37
XceI RCATGY 2 cut(s) 123, 800
XmiI GTMKAC 2 cut(s) 577, 936
XmnI GAANNNNTTC 3 cut(s) 45, 72, 90
XspI CTAG 2 cut(s) 38, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.