U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49060 AT3G49060 AT3G49060 |
| fragaria_vesca | FvH4_7g29840 FvH4_7g29840 FvH4_7g29840 FvH4_7g29840 FvH4_7g29840 FvH4_7g29840 |
| malus_domestica | MD01G1205000.v1.1 |
| prunus_persica | Prupe.2G297400_v2.0.a1 |
| pyrus_communis | pycom01g21460 |
| rosa_chinensis | RchiOBHm_Chr1g0377811 |
| rosa_laevigata | RLG00000026496 |
| rosa_multiflora | Rmu_co8492821.1_g000001 Rmu_sc0004824.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00281040 |
| rosa_rugosa | Rorug01G0405200 |
| rosa_samantha | Rh1AG427100 Rh1BG382200 Rh1CG396100 Rh1DG413200 |
| rosa_wichuraiana | Rw1G037150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1315, 2033 |
| AccII | CGCG | 5 cut(s) | 59, 109, 162, 862, 1907 |
| AccIII | TCCGGA | 1 cut(s) | 1245 |
| AciI | CCGC | 6 cut(s) | 59, 65, 104, 323, 563, 2003 |
| AclI | AACGTT | 2 cut(s) | 1641, 2190 |
| AcoI | YGGCCR | 1 cut(s) | 2030 |
| AcsI | RAATTY | 3 cut(s) | 265, 1190, 1376 |
| AcuI | CTGAAG | 1 cut(s) | 1094 |
| AcyI | GRCGYC | 1 cut(s) | 527 |
| AfaI | GTAC | 2 cut(s) | 573, 961 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 796, 1475, 1826, 1952, 2347 |
| AflII | CTTAAG | 1 cut(s) | 1133 |
| AflIII | ACRYGT | 1 cut(s) | 1905 |
| AgsI | TTSAA | 9 cut(s) | 302, 665, 1064, 1216, 1439, 1448, 1486, 1716, 1875 |
| AjnI | CCWGG | 3 cut(s) | 170, 1764, 2232 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1121, 1153 |
| Alw21I | GWGCWC | 2 cut(s) | 724, 1212 |
| Alw26I | GTCTC | 7 cut(s) | 38, 587, 1301, 1578, 1584, 2019, 2159 |
| Aor13HI | TCCGGA | 1 cut(s) | 1245 |
| AoxI | GGCC | 3 cut(s) | 1943, 2030, 2201 |
| ApeKI | GCWGC | 5 cut(s) | 164, 395, 654, 1927, 2261 |
| ApoI | RAATTY | 3 cut(s) | 265, 1190, 1376 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1220 |
| AspLEI | GCGC | 6 cut(s) | 109, 164, 654, 862, 864, 1979 |
| AspS9I | GGNCC | 1 cut(s) | 773 |
| AsuHPI | GGTGA | 5 cut(s) | 235, 686, 1196, 1774, 1927 |
| AsuNHI | GCTAGC | 1 cut(s) | 2053 |
| AvaII | GGWCC | 1 cut(s) | 773 |
| BalI | TGGCCA | 1 cut(s) | 2032 |
| BamHI | GGATCC | 1 cut(s) | 1478 |
| BanII | GRGCYC | 1 cut(s) | 1212 |
| BauI | CACGAG | 2 cut(s) | 1256, 2040 |
| BbsI | GAAGAC | 3 cut(s) | 1297, 1311, 1623 |
| Bbv12I | GWGCWC | 2 cut(s) | 724, 1212 |
| BbvI | GCAGC | 5 cut(s) | 151, 382, 666, 1939, 2273 |
| BccI | CCATC | 5 cut(s) | 665, 1108, 1393, 1549, 2075 |
| BceAI | ACGGC | 1 cut(s) | 1735 |
| BciT130I | CCWGG | 3 cut(s) | 172, 1766, 2234 |
| BcoDI | GTCTC | 7 cut(s) | 38, 587, 1301, 1578, 1584, 2019, 2159 |
| BfaI | CTAG | 4 cut(s) | 569, 1889, 2054, 2387 |
| BfmI | CTRYAG | 1 cut(s) | 1925 |
| BfrI | CTTAAG | 1 cut(s) | 1133 |
| BisI | GCNGC | 7 cut(s) | 105, 165, 396, 563, 655, 1928, 2262 |
| BlsI | GCNGC | 7 cut(s) | 106, 166, 397, 564, 656, 1929, 2263 |
| Bme1390I | CCNGG | 3 cut(s) | 172, 1766, 2234 |
| Bme18I | GGWCC | 1 cut(s) | 773 |
| BmgT120I | GGNCC | 1 cut(s) | 773 |
| BmiI | GGNNCC | 1 cut(s) | 1480 |
| BmrFI | CCNGG | 3 cut(s) | 172, 1766, 2234 |
| BmsI | GCATC | 4 cut(s) | 407, 943, 1543, 1737 |
| BmtI | GCTAGC | 1 cut(s) | 2057 |
| BpiI | GAAGAC | 3 cut(s) | 1297, 1311, 1623 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1676, 1708 |
| BpmI | CTGGAG | 2 cut(s) | 716, 2003 |
| Bsa29I | ATCGAT | 1 cut(s) | 1251 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1247, 1773 |
| BsaHI | GRCGYC | 1 cut(s) | 527 |
| BsaI | GGTCTC | 2 cut(s) | 1301, 1584 |
| BsaJI | CCNNGG | 1 cut(s) | 90 |
| BsaWI | WCCGGW | 2 cut(s) | 1245, 1310 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 753, 783 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 796, 1475, 1826, 1952, 2347 |
| Bse118I | RCCGGY | 3 cut(s) | 766, 781, 2199 |
| Bse1I | ACTGG | 6 cut(s) | 30, 699, 957, 1299, 2033, 2033 |
| Bse3DI | GCAATG | 1 cut(s) | 318 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1247, 1773 |
| BseAI | TCCGGA | 1 cut(s) | 1245 |
| BseBI | CCWGG | 3 cut(s) | 172, 1766, 2234 |
| BseCI | ATCGAT | 1 cut(s) | 1251 |
| BseDI | CCNNGG | 1 cut(s) | 90 |
| BseGI | GGATG | 7 cut(s) | 46, 259, 859, 958, 1243, 1534, 2067 |
| BseJI | GATNNNNATC | 2 cut(s) | 1247, 1773 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 796, 1475, 1826, 1952, 2347 |
| BseMI | GCAATG | 1 cut(s) | 318 |
| BseMII | CTCAG | 6 cut(s) | 285, 819, 1277, 1674, 1823, 1952 |
| BseNI | ACTGG | 6 cut(s) | 30, 699, 957, 1299, 2033, 2033 |
| BsePI | GCGCGC | 1 cut(s) | 860 |
| BseRI | GAGGAG | 2 cut(s) | 646, 717 |
| BseXI | GCAGC | 5 cut(s) | 151, 382, 666, 1939, 2273 |
| BseYI | CCCAGC | 1 cut(s) | 932 |
| Bsh1236I | CGCG | 5 cut(s) | 59, 109, 162, 862, 1907 |
| BshFI | GGCC | 3 cut(s) | 1945, 2032, 2203 |
| BshVI | ATCGAT | 1 cut(s) | 1251 |
| BsiHKAI | GWGCWC | 2 cut(s) | 724, 1212 |
| BsiSI | CCGG | 6 cut(s) | 120, 767, 782, 1246, 1311, 2200 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 796, 1475, 1826, 1952, 2347 |
| BsmAI | GTCTC | 7 cut(s) | 38, 587, 1301, 1578, 1584, 2019, 2159 |
| BsmBI | CGTCTC | 1 cut(s) | 38 |
| BsnI | GGCC | 3 cut(s) | 1945, 2032, 2203 |
| Bso31I | GGTCTC | 2 cut(s) | 1301, 1584 |
| Bsp1286I | GDGCHC | 2 cut(s) | 724, 1212 |
| Bsp13I | TCCGGA | 1 cut(s) | 1245 |
| BspACI | CCGC | 6 cut(s) | 59, 65, 104, 323, 563, 2003 |
| BspANI | GGCC | 3 cut(s) | 1945, 2032, 2203 |
| BspCNI | CTCAG | 6 cut(s) | 286, 818, 1278, 1675, 1822, 1953 |
| BspDI | ATCGAT | 1 cut(s) | 1251 |
| BspEI | TCCGGA | 1 cut(s) | 1245 |
| BspFNI | CGCG | 5 cut(s) | 59, 109, 162, 862, 1907 |
| BspHI | TCATGA | 1 cut(s) | 1098 |
| BspLI | GGNNCC | 1 cut(s) | 1480 |
| BspMAI | CTGCAG | 1 cut(s) | 1929 |
| BspOI | GCTAGC | 1 cut(s) | 2057 |
| BspQI | GCTCTTC | 1 cut(s) | 2385 |
| BspTI | CTTAAG | 1 cut(s) | 1133 |
| BspTNI | GGTCTC | 2 cut(s) | 1301, 1584 |
| BsrDI | GCAATG | 1 cut(s) | 318 |
| BsrFI | RCCGGY | 3 cut(s) | 766, 781, 2199 |
| BsrI | ACTGG | 6 cut(s) | 30, 699, 957, 1299, 2033, 2033 |
| BssAI | RCCGGY | 3 cut(s) | 766, 781, 2199 |
| BssECI | CCNNGG | 1 cut(s) | 90 |
| BssHII | GCGCGC | 1 cut(s) | 860 |
| BssNI | GRCGYC | 1 cut(s) | 527 |
| BssSI | CACGAG | 2 cut(s) | 1256, 2040 |
| Bst2BI | CACGAG | 2 cut(s) | 1256, 2040 |
| Bst2UI | CCWGG | 3 cut(s) | 172, 1766, 2234 |
| Bst4CI | ACNGT | 3 cut(s) | 94, 919, 2124 |
| Bst6I | CTCTTC | 2 cut(s) | 942, 2385 |
| BstACI | GRCGYC | 1 cut(s) | 527 |
| BstAFI | CTTAAG | 1 cut(s) | 1133 |
| BstC8I | GCNNGC | 5 cut(s) | 137, 160, 862, 2055, 2201 |
| BstDEI | CTNAG | 9 cut(s) | 31, 294, 805, 1286, 1683, 1755, 1809, 1961, 2107 |
| BstDSI | CCRYGG | 1 cut(s) | 90 |
| BstEII | GGTNACC | 1 cut(s) | 506 |
| BstF5I | GGATG | 7 cut(s) | 46, 259, 859, 958, 1243, 1534, 2067 |
| BstFNI | CGCG | 5 cut(s) | 59, 109, 162, 862, 1907 |
| BstHHI | GCGC | 6 cut(s) | 109, 164, 654, 862, 864, 1979 |
| BstMAI | GTCTC | 7 cut(s) | 38, 587, 1301, 1578, 1584, 2019, 2159 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 164, 2063 |
| BstNI | CCWGG | 3 cut(s) | 172, 1766, 2234 |
| BstPI | GGTNACC | 1 cut(s) | 506 |
| BstSCI | CCNGG | 3 cut(s) | 170, 1764, 2232 |
| BstSFI | CTRYAG | 1 cut(s) | 1925 |
| BstUI | CGCG | 5 cut(s) | 59, 109, 162, 862, 1907 |
| BstV1I | GCAGC | 5 cut(s) | 151, 382, 666, 1939, 2273 |
| BstV2I | GAAGAC | 3 cut(s) | 1297, 1311, 1623 |
| BstX2I | RGATCY | 7 cut(s) | 430, 1242, 1478, 1803, 1843, 1855, 2248 |
| BstYI | RGATCY | 7 cut(s) | 430, 1242, 1478, 1803, 1843, 1855, 2248 |
| Bsu15I | ATCGAT | 1 cut(s) | 1251 |
| BsuRI | GGCC | 3 cut(s) | 1945, 2032, 2203 |
| BsuTUI | ATCGAT | 1 cut(s) | 1251 |
| BtgI | CCRYGG | 1 cut(s) | 90 |
| BtsCI | GGATG | 7 cut(s) | 46, 259, 859, 958, 1243, 1534, 2067 |
| BtsI | GCAGTG | 1 cut(s) | 2118 |
| BtsIMutI | CAGTG | 4 cut(s) | 1283, 1550, 2005, 2118 |
| Cac8I | GCNNGC | 5 cut(s) | 137, 160, 862, 2055, 2201 |
| CciI | TCATGA | 1 cut(s) | 1098 |
| CfoI | GCGC | 6 cut(s) | 109, 164, 654, 862, 864, 1979 |
| Cfr10I | RCCGGY | 3 cut(s) | 766, 781, 2199 |
| Cfr13I | GGNCC | 1 cut(s) | 773 |
| ClaI | ATCGAT | 1 cut(s) | 1251 |
| CseI | GACGC | 4 cut(s) | 184, 516, 1493, 1894 |
| Csp6I | GTAC | 2 cut(s) | 572, 960 |
| CviAII | CATG | 9 cut(s) | 212, 417, 889, 893, 1099, 1181, 1656, 1736, 1850 |
| CviQI | GTAC | 2 cut(s) | 572, 960 |
| DdeI | CTNAG | 9 cut(s) | 31, 294, 805, 1286, 1683, 1755, 1809, 1961, 2107 |
| DraI | TTTAAA | 1 cut(s) | 205 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1315, 2033 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1315, 2033 |
| EaeI | YGGCCR | 1 cut(s) | 2030 |
| Eam1104I | CTCTTC | 2 cut(s) | 942, 2385 |
| EarI | CTCTTC | 2 cut(s) | 942, 2385 |
| EciI | GGCGGA | 1 cut(s) | 80 |
| Ecl136II | GAGCTC | 1 cut(s) | 1210 |
| Eco147I | AGGCCT | 1 cut(s) | 1945 |
| Eco24I | GRGCYC | 1 cut(s) | 1212 |
| Eco31I | GGTCTC | 2 cut(s) | 1301, 1584 |
| Eco47I | GGWCC | 1 cut(s) | 773 |
| Eco53kI | GAGCTC | 1 cut(s) | 1210 |
| Eco57I | CTGAAG | 1 cut(s) | 1094 |
| Eco91I | GGTNACC | 1 cut(s) | 506 |
| EcoICRI | GAGCTC | 1 cut(s) | 1210 |
| EcoO65I | GGTNACC | 1 cut(s) | 506 |
| EcoRI | GAATTC | 1 cut(s) | 265 |
| EcoRII | CCWGG | 3 cut(s) | 170, 1764, 2232 |
| EcoT22I | ATGCAT | 2 cut(s) | 894, 1007 |
| EcoT38I | GRGCYC | 1 cut(s) | 1212 |
| Esp3I | CGTCTC | 1 cut(s) | 38 |
| FaeI | CATG | 9 cut(s) | 215, 420, 892, 896, 1102, 1184, 1659, 1739, 1853 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 119, 151, 495, 527, 1419, 1451 |
| FatI | CATG | 9 cut(s) | 211, 416, 888, 892, 1098, 1180, 1655, 1735, 1849 |
| FauI | CCCGC | 1 cut(s) | 316 |
| FauNDI | CATATG | 1 cut(s) | 1474 |
| Fnu4HI | GCNGC | 7 cut(s) | 105, 165, 396, 563, 655, 1928, 2262 |
| FokI | GGATG | 7 cut(s) | 53, 266, 866, 965, 1250, 1521, 2054 |
| FriOI | GRGCYC | 1 cut(s) | 1212 |
| Fsp4HI | GCNGC | 7 cut(s) | 105, 165, 396, 563, 655, 1928, 2262 |
| FspBI | CTAG | 4 cut(s) | 569, 1889, 2054, 2387 |
| GlaI | GCGC | 6 cut(s) | 108, 163, 653, 861, 863, 1978 |
| GluI | GCNGC | 7 cut(s) | 105, 165, 396, 563, 655, 1928, 2262 |
| GsaI | CCCAGC | 1 cut(s) | 936 |
| GsuI | CTGGAG | 2 cut(s) | 716, 2003 |
| HaeIII | GGCC | 3 cut(s) | 1945, 2032, 2203 |
| HapII | CCGG | 6 cut(s) | 120, 767, 782, 1246, 1311, 2200 |
| HgaI | GACGC | 4 cut(s) | 184, 516, 1493, 1894 |
| HhaI | GCGC | 6 cut(s) | 109, 164, 654, 862, 864, 1979 |
| Hin1I | GRCGYC | 1 cut(s) | 527 |
| Hin1II | CATG | 9 cut(s) | 215, 420, 892, 896, 1102, 1184, 1659, 1739, 1853 |
| Hin6I | GCGC | 6 cut(s) | 107, 162, 652, 860, 862, 1977 |
| HinP1I | GCGC | 6 cut(s) | 107, 162, 652, 860, 862, 1977 |
| HincII | GTYRAC | 2 cut(s) | 692, 802 |
| HindII | GTYRAC | 2 cut(s) | 692, 802 |
| HindIII | AAGCTT | 2 cut(s) | 987, 1058 |
| HpaII | CCGG | 6 cut(s) | 120, 767, 782, 1246, 1311, 2200 |
| HphI | GGTGA | 5 cut(s) | 235, 686, 1196, 1774, 1927 |
| Hpy166II | GTNNAC | 3 cut(s) | 692, 802, 1279 |
| Hpy8I | GTNNAC | 3 cut(s) | 692, 802, 1279 |
| Hpy99I | CGWCG | 3 cut(s) | 59, 1509, 2329 |
| HpyAV | CCTTC | 7 cut(s) | 842, 989, 1397, 1709, 1935, 2166, 2217 |
| HpyCH4III | ACNGT | 3 cut(s) | 94, 919, 2124 |
| HpyCH4IV | ACGT | 3 cut(s) | 1641, 2190, 2324 |
| HpyCH4V | TGCA | 9 cut(s) | 318, 398, 462, 892, 978, 1005, 1728, 1927, 2358 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 164, 2063 |
| HpyF3I | CTNAG | 9 cut(s) | 31, 294, 805, 1286, 1683, 1755, 1809, 1961, 2107 |
| HpySE526I | ACGT | 3 cut(s) | 1641, 2190, 2324 |
| Hsp92I | GRCGYC | 1 cut(s) | 527 |
| Hsp92II | CATG | 9 cut(s) | 215, 420, 892, 896, 1102, 1184, 1659, 1739, 1853 |
| HspAI | GCGC | 6 cut(s) | 107, 162, 652, 860, 862, 1977 |
| Kpn2I | TCCGGA | 1 cut(s) | 1245 |
| KroI | GCCGGC | 1 cut(s) | 2199 |
| KroNI | GCCGGC | 1 cut(s) | 2201 |
| LguI | GCTCTTC | 1 cut(s) | 2385 |
| LmnI | GCTCC | 3 cut(s) | 392, 475, 1207 |
| Lsp1109I | GCAGC | 5 cut(s) | 151, 382, 666, 1939, 2273 |
| LweI | GCATC | 4 cut(s) | 407, 943, 1543, 1737 |
| MaeI | CTAG | 4 cut(s) | 569, 1889, 2054, 2387 |
| MaeII | ACGT | 3 cut(s) | 1641, 2190, 2324 |
| MaeIII | GTNAC | 5 cut(s) | 110, 506, 1464, 1546, 1780 |
| MflI | RGATCY | 7 cut(s) | 430, 1242, 1478, 1803, 1843, 1855, 2248 |
| MhlI | GDGCHC | 2 cut(s) | 724, 1212 |
| MlsI | TGGCCA | 1 cut(s) | 2032 |
| MluCI | AATT | 9 cut(s) | 265, 357, 372, 611, 794, 1040, 1190, 1376, 2014 |
| MluI | ACGCGT | 1 cut(s) | 1905 |
| MluNI | TGGCCA | 1 cut(s) | 2032 |
| MlyI | GAGTC | 4 cut(s) | 797, 1022, 1325, 1580 |
| MmeI | TCCRAC | 4 cut(s) | 301, 1106, 1119, 1308 |
| Mox20I | TGGCCA | 1 cut(s) | 2032 |
| Mph1103I | ATGCAT | 2 cut(s) | 894, 1007 |
| MroI | TCCGGA | 1 cut(s) | 1245 |
| MroNI | GCCGGC | 1 cut(s) | 2199 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1220 |
| MscI | TGGCCA | 1 cut(s) | 2032 |
| MseI | TTAA | 7 cut(s) | 204, 375, 641, 1008, 1134, 1299, 1520 |
| MslI | CAYNNNNRTG | 1 cut(s) | 876 |
| Msp20I | TGGCCA | 1 cut(s) | 2032 |
| MspA1I | CMGCKG | 2 cut(s) | 577, 1813 |
| MspCI | CTTAAG | 1 cut(s) | 1133 |
| MspI | CCGG | 6 cut(s) | 120, 767, 782, 1246, 1311, 2200 |
| MspR9I | CCNGG | 3 cut(s) | 172, 1766, 2234 |
| MvaI | CCWGG | 3 cut(s) | 172, 1766, 2234 |
| MvnI | CGCG | 5 cut(s) | 59, 109, 162, 862, 1907 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 164, 2063 |
| NaeI | GCCGGC | 1 cut(s) | 2201 |
| NdeI | CATATG | 1 cut(s) | 1474 |
| NgoMIV | GCCGGC | 1 cut(s) | 2199 |
| NheI | GCTAGC | 1 cut(s) | 2053 |
| NlaIII | CATG | 9 cut(s) | 215, 420, 892, 896, 1102, 1184, 1659, 1739, 1853 |
| NlaIV | GGNNCC | 1 cut(s) | 1480 |
| NmeAIII | GCCGAG | 1 cut(s) | 343 |
| NmuCI | GTSAC | 1 cut(s) | 1780 |
| NsiI | ATGCAT | 2 cut(s) | 894, 1007 |
| PagI | TCATGA | 1 cut(s) | 1098 |
| PauI | GCGCGC | 1 cut(s) | 860 |
| PceI | AGGCCT | 1 cut(s) | 1945 |
| PciSI | GCTCTTC | 1 cut(s) | 2385 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1611 |
| PdiI | GCCGGC | 1 cut(s) | 2201 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1220 |
| PfoI | TCCNGGA | 3 cut(s) | 170, 1764, 2232 |
| PkrI | GCNGC | 7 cut(s) | 106, 166, 397, 564, 656, 1929, 2263 |
| PleI | GAGTC | 4 cut(s) | 797, 1021, 1324, 1579 |
| PpsI | GAGTC | 4 cut(s) | 797, 1021, 1324, 1579 |
| Psp124BI | GAGCTC | 1 cut(s) | 1212 |
| Psp1406I | AACGTT | 2 cut(s) | 1641, 2190 |
| Psp6I | CCWGG | 3 cut(s) | 170, 1764, 2232 |
| PspEI | GGTNACC | 1 cut(s) | 506 |
| PspFI | CCCAGC | 1 cut(s) | 932 |
| PspGI | CCWGG | 3 cut(s) | 170, 1764, 2232 |
| PspN4I | GGNNCC | 1 cut(s) | 1480 |
| PspPI | GGNCC | 1 cut(s) | 773 |
| PstI | CTGCAG | 1 cut(s) | 1929 |
| PsuI | RGATCY | 7 cut(s) | 430, 1242, 1478, 1803, 1843, 1855, 2248 |
| PteI | GCGCGC | 1 cut(s) | 860 |
| PvuII | CAGCTG | 2 cut(s) | 577, 1813 |
| RsaI | GTAC | 2 cut(s) | 573, 961 |
| RsaNI | GTAC | 2 cut(s) | 572, 960 |
| RseI | CAYNNNNRTG | 1 cut(s) | 876 |
| SacI | GAGCTC | 1 cut(s) | 1212 |
| SapI | GCTCTTC | 1 cut(s) | 2385 |
| SaqAI | TTAA | 7 cut(s) | 204, 375, 641, 1008, 1134, 1299, 1520 |
| SatI | GCNGC | 7 cut(s) | 105, 165, 396, 563, 655, 1928, 2262 |
| Sau96I | GGNCC | 1 cut(s) | 773 |
| SchI | GAGTC | 4 cut(s) | 797, 1022, 1325, 1580 |
| ScrFI | CCNGG | 3 cut(s) | 172, 1766, 2234 |
| SduI | GDGCHC | 2 cut(s) | 724, 1212 |
| SfaNI | GCATC | 4 cut(s) | 407, 943, 1543, 1737 |
| SfcI | CTRYAG | 1 cut(s) | 1925 |
| SinI | GGWCC | 1 cut(s) | 773 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 876 |
| SmlI | CTYRAG | 1 cut(s) | 1133 |
| SmoI | CTYRAG | 1 cut(s) | 1133 |
| Sse9I | AATT | 9 cut(s) | 265, 357, 372, 611, 794, 1040, 1190, 1376, 2014 |
| SseBI | AGGCCT | 1 cut(s) | 1945 |
| SsiI | CCGC | 6 cut(s) | 59, 65, 104, 323, 563, 2003 |
| SspMI | CTAG | 4 cut(s) | 569, 1889, 2054, 2387 |
| SstI | GAGCTC | 1 cut(s) | 1212 |
| StuI | AGGCCT | 1 cut(s) | 1945 |
| StyD4I | CCNGG | 3 cut(s) | 170, 1764, 2232 |
| TaaI | ACNGT | 3 cut(s) | 94, 919, 2124 |
| TaiI | ACGT | 3 cut(s) | 1644, 2193, 2327 |
| TaqI | TCGA | 8 cut(s) | 151, 336, 746, 1016, 1251, 1614, 2098, 2134 |
| TaqII | GACCGA | 1 cut(s) | 1566 |
| TasI | AATT | 9 cut(s) | 265, 357, 372, 611, 794, 1040, 1190, 1376, 2014 |
| TatI | WGTACW | 2 cut(s) | 571, 959 |
| TauI | GCSGC | 2 cut(s) | 107, 565 |
| Tru1I | TTAA | 7 cut(s) | 204, 375, 641, 1008, 1134, 1299, 1520 |
| Tru9I | TTAA | 7 cut(s) | 204, 375, 641, 1008, 1134, 1299, 1520 |
| TscAI | CASTG | 4 cut(s) | 1290, 1557, 2005, 2118 |
| TseFI | GTSAC | 1 cut(s) | 1780 |
| TseI | GCWGC | 5 cut(s) | 164, 395, 654, 1927, 2261 |
| Tsp45I | GTSAC | 1 cut(s) | 1780 |
| TspGWI | ACGGA | 7 cut(s) | 443, 1428, 1620, 1713, 1842, 2060, 2283 |
| TspRI | CASTG | 4 cut(s) | 1290, 1557, 2005, 2118 |
| Vha464I | CTTAAG | 1 cut(s) | 1133 |
| VpaK11BI | GGWCC | 1 cut(s) | 773 |
| XapI | RAATTY | 3 cut(s) | 265, 1190, 1376 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1220 |
| XspI | CTAG | 4 cut(s) | 569, 1889, 2054, 2387 |
| Zsp2I | ATGCAT | 2 cut(s) | 894, 1007 |