Rmu_co8492821.1_g000001

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8492821.1
Physical Location & Seq
Reverse (-)
1 .. 2308
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8492821.1_g000001.1.cds

Sequence Viewer

Length: 1671 bp
atgtacttgccatatgtaatagccacttataccgaagcatttgaaaacaggggagacagagaagataattctgaaatagaaagtgcccctcctttgctgctgctgaattcggctactggaacagaggaaccggagcacttaagtacagaatcaattctttggttgagaaatctagatgctgaggaagatgtcaatgaagtggaagatctgtcaaggaggttgaccccattactgatagatgaggaggaaaaagcagctggtggaagttatgataaagtaacgcaagccattttggacagaaagaactcaaaccaaatggaatttgaagatacagcaaggaggtggaaagtggaagatgatgccatggaggccaaatgcaaggccaaagcatttgaaagcttatgcactaaggagatgagccaaagaaaagagttggaagaattgcttgctacaattaggcaggaaacagaggggttgagggatgaatgtgataaatatatagaacaagtccagatattccgggacaagaacttagtgctggagggccaactagcagagtcgcaatgtacagttaaggagttagaggagaagatcatctctgcggtgaagctcttgattagttttagagaaaaacgggataacatgcaagcggagtatagaaatgcaataagaaaagtcaatcagctaagcacatcaggggaagctgcaagcttttgtcgtgcggaattccccgtattctcttttcttgagatcaatgaggcaactcagaattttgacccatcccagaagattggagaaggaaggtatggaagtgtttataaagggattcttcgccacatgcatgttgcaataaagatgttgccctcttatggttctaaaaggcaattagacttccaaaatgaggtagaggtcttgagcagagcaaggcatccaaacctggtaacactaattggaatgtgtccagaatctaggtcacttgtgtatgaataccttaaaaatggcagccttgaggaccgccttgcaggcaaagacaaggctccacctcttccatggcaaattcgaacatgcattgctactgaaatatgctctgcccttatcttccttcactcgaatatcccatgtattgtccatgggaatctaaaagcaagtaacattctcttggatgcaaactttgtgagcaaacttggtgatttgggcatcgtttccttaatttcacaaaatgaagatccgaccaacttcaccaaaatatgtaatgatccaaatggaacttttgtgtatatggatccagagtatgtggagacaggaaagcttacaagagaatcagatgtttactcatttgggattttattattacgacttttaactgcaagaccacttttggggatagtgaaagatgtgaaatgcgcactagagaatgacagcatcagtggtttgttggacgtttcagctggagactggccgctagagcaagcacgggagttggctctcttagcaatgaggtgttgtgaggagaaccggttgaatcggatggacctatctgtcgtccatgaggtaatgagaacttcatgtgctgcgtctgagtcttactcgatttctaagaagcttctccgaacaccatcccatttcgtctgccccattcttcaggtaacctacatgtactgtccattatgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

557

Amino Acids

63.15

Weight (kDa)

5.0

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 819
AasI GACNNNNNNGTC 1 cut(s) 1538
Acc16I TGCGCA 1 cut(s) 1405
AciI CCGC 5 cut(s) 602, 650, 722, 1015, 1460
AclWI GGATC 4 cut(s) 1220, 1250, 1277, 1290
AcoI YGGCCR 1 cut(s) 1457
AcsI RAATTY 5 cut(s) 106, 320, 725, 769, 1056
AcuI CTGAAG 1 cut(s) 1625
AfaI GTAC 4 cut(s) 5, 145, 568, 1658
AfiI CCNNNNNNNGG 3 cut(s) 869, 901, 1379
AflII CTTAAG 1 cut(s) 139
AflIII ACRYGT 1 cut(s) 1653
AgeI ACCGGT 1 cut(s) 1515
AgsI TTSAA 4 cut(s) 44, 326, 395, 1522
AjnI CCWGG 1 cut(s) 936
AluBI AGCT 9 cut(s) 257, 399, 610, 685, 704, 711, 1309, 1448, 1603
AluI AGCT 9 cut(s) 257, 399, 610, 685, 704, 711, 1309, 1448, 1603
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 3 cut(s) 48, 1292, 1446
AlwI GGATC 4 cut(s) 1220, 1250, 1277, 1290
AoxI GGCC 4 cut(s) 369, 381, 544, 1457
ApeKI GCWGC 6 cut(s) 97, 100, 254, 704, 1002, 1571
ApoI RAATTY 5 cut(s) 106, 320, 725, 769, 1056
AsiGI ACCGGT 1 cut(s) 1515
Asp700I GAANNNNTTC 1 cut(s) 153
AspLEI GCGC 1 cut(s) 1406
AspS9I GGNCC 3 cut(s) 544, 1012, 1531
AsuC2I CCSGG 1 cut(s) 521
AsuHPI GGTGA 3 cut(s) 616, 1199, 1231
AsuII TTCGAA 1 cut(s) 1060
AvaII GGWCC 2 cut(s) 1012, 1531
BaeGI GKGCMC 1 cut(s) 88
BamHI GGATCC 1 cut(s) 1282
Bbv12I GWGCWC 1 cut(s) 138
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 6 cut(s) 84, 87, 266, 691, 1014, 1558
BccI CCATC 3 cut(s) 787, 1522, 1624
BciT130I CCWGG 1 cut(s) 938
BcnI CCSGG 1 cut(s) 521
BcoDI GTCTC 3 cut(s) 48, 1292, 1446
BfaI CTAG 5 cut(s) 173, 551, 969, 1409, 1463
BfrI CTTAAG 1 cut(s) 139
BglI GCCNNNNNGGC 2 cut(s) 368, 1023
BglII AGATCT 1 cut(s) 205
BisI GCNGC 7 cut(s) 98, 101, 255, 705, 1003, 1460, 1572
BlpI GCTNAGC 1 cut(s) 686
BlsI GCNGC 7 cut(s) 99, 102, 256, 706, 1004, 1461, 1573
Bme1390I CCNGG 2 cut(s) 521, 938
Bme18I GGWCC 2 cut(s) 1012, 1531
BmgT120I GGNCC 3 cut(s) 544, 1012, 1531
BmiI GGNNCC 3 cut(s) 129, 1038, 1284
BmrFI CCNGG 2 cut(s) 521, 938
BmsI GCATC 6 cut(s) 166, 349, 937, 1153, 1206, 1431
BplI GAGNNNNNCTC 2 cut(s) 1571, 1603
BpmI CTGGAG 2 cut(s) 560, 1470
Bpu10I CCTNAGC 1 cut(s) 180
Bpu1102I GCTNAGC 1 cut(s) 686
Bpu14I TTCGAA 1 cut(s) 1060
BpuEI CTTGAG 3 cut(s) 767, 934, 1028
BpuMI CCSGG 1 cut(s) 521
BsaJI CCNNGG 3 cut(s) 363, 1049, 1129
BsaWI WCCGGW 2 cut(s) 130, 1515
BsaXI ACNNNNNCTCC 2 cut(s) 1502, 1532
Bsc4I CCNNNNNNNGG 3 cut(s) 869, 901, 1379
Bse118I RCCGGY 1 cut(s) 1515
Bse1I ACTGG 2 cut(s) 121, 1460
Bse3DI GCAATG 3 cut(s) 569, 1068, 1500
BseBI CCWGG 1 cut(s) 938
BseDI CCNNGG 3 cut(s) 363, 1049, 1129
BseGI GGATG 6 cut(s) 487, 779, 928, 1168, 1533, 1616
BseLI CCNNNNNNNGG 3 cut(s) 869, 901, 1379
BseMI GCAATG 3 cut(s) 569, 1068, 1500
BseMII CTCAG 3 cut(s) 171, 779, 1569
BseNI ACTGG 2 cut(s) 121, 1460
BseRI GAGGAG 3 cut(s) 257, 599, 1523
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 6 cut(s) 84, 87, 266, 691, 1014, 1558
BshFI GGCC 4 cut(s) 371, 383, 546, 1459
BshTI ACCGGT 1 cut(s) 1515
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 3 cut(s) 131, 520, 1516
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 3 cut(s) 869, 901, 1379
BsmAI GTCTC 3 cut(s) 48, 1292, 1446
BsmFI GGGAC 1 cut(s) 536
BsnI GGCC 4 cut(s) 371, 383, 546, 1459
Bsp119I TTCGAA 1 cut(s) 1060
Bsp1286I GDGCHC 2 cut(s) 88, 138
Bsp1407I TGTACA 1 cut(s) 566
Bsp143I GATC 6 cut(s) 205, 591, 750, 1225, 1255, 1282
Bsp1720I GCTNAGC 1 cut(s) 686
Bsp19I CCATGG 3 cut(s) 363, 1049, 1129
BspACI CCGC 5 cut(s) 602, 650, 722, 1015, 1460
BspANI GGCC 4 cut(s) 371, 383, 546, 1459
BspCNI CTCAG 3 cut(s) 172, 778, 1570
BspLI GGNNCC 3 cut(s) 129, 1038, 1284
BspPI GGATC 4 cut(s) 1220, 1250, 1277, 1290
BspT104I TTCGAA 1 cut(s) 1060
BspTI CTTAAG 1 cut(s) 139
BsrDI GCAATG 3 cut(s) 569, 1068, 1500
BsrFI RCCGGY 1 cut(s) 1515
BsrGI TGTACA 1 cut(s) 566
BsrI ACTGG 2 cut(s) 121, 1460
BssAI RCCGGY 1 cut(s) 1515
BssECI CCNNGG 3 cut(s) 363, 1049, 1129
BssMI GATC 6 cut(s) 205, 591, 750, 1225, 1255, 1282
BssT1I CCWWGG 3 cut(s) 363, 1049, 1129
Bst2UI CCWGG 1 cut(s) 938
Bst4CI ACNGT 2 cut(s) 571, 1661
Bst6I CTCTTC 1 cut(s) 1050
BstAFI CTTAAG 1 cut(s) 139
BstAUI TGTACA 1 cut(s) 566
BstBI TTCGAA 1 cut(s) 1060
BstC8I GCNNGC 6 cut(s) 285, 447, 648, 709, 1024, 1470
BstDEI CTNAG 8 cut(s) 180, 408, 532, 686, 765, 1489, 1578, 1596
BstDSI CCRYGG 3 cut(s) 363, 1049, 1129
BstEII GGTNACC 1 cut(s) 1645
BstF5I GGATG 6 cut(s) 487, 779, 928, 1168, 1533, 1616
BstHHI GCGC 1 cut(s) 1406
BstKTI GATC 6 cut(s) 208, 594, 753, 1228, 1258, 1285
BstMAI GTCTC 3 cut(s) 48, 1292, 1446
BstMBI GATC 6 cut(s) 205, 591, 750, 1225, 1255, 1282
BstMWI GCNNNNNNNGC 4 cut(s) 368, 1023, 1465, 1490
BstNI CCWGG 1 cut(s) 938
BstNSI RCATGY 5 cut(s) 646, 841, 845, 1068, 1657
BstPI GGTNACC 1 cut(s) 1645
BstSCI CCNGG 2 cut(s) 519, 936
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 6 cut(s) 84, 87, 266, 691, 1014, 1558
BstX2I RGATCY 3 cut(s) 205, 1225, 1282
BstXI CCANNNNNNTGG 1 cut(s) 791
BstYI RGATCY 3 cut(s) 205, 1225, 1282
BsuRI GGCC 4 cut(s) 371, 383, 546, 1459
BtgI CCRYGG 3 cut(s) 363, 1049, 1129
BtsCI GGATG 6 cut(s) 487, 779, 928, 1168, 1533, 1616
BtsIMutI CAGTG 1 cut(s) 1432
Cac8I GCNNGC 6 cut(s) 285, 447, 648, 709, 1024, 1470
CfoI GCGC 1 cut(s) 1406
Cfr10I RCCGGY 1 cut(s) 1515
Cfr13I GGNCC 3 cut(s) 544, 1012, 1531
CseI GACGC 1 cut(s) 1563
CsiI ACCWGGT 1 cut(s) 936
Csp6I GTAC 4 cut(s) 4, 144, 567, 1657
CspAI ACCGGT 1 cut(s) 1515
CviQI GTAC 4 cut(s) 4, 144, 567, 1657
DdeI CTNAG 8 cut(s) 180, 408, 532, 686, 765, 1489, 1578, 1596
DpnI GATC 6 cut(s) 207, 593, 752, 1227, 1257, 1284
DpnII GATC 6 cut(s) 205, 591, 750, 1225, 1255, 1282
DrdI GACNNNNNNGTC 1 cut(s) 1538
DseDI GACNNNNNNGTC 1 cut(s) 1538
EaeI YGGCCR 1 cut(s) 1457
Eam1104I CTCTTC 1 cut(s) 1050
EarI CTCTTC 1 cut(s) 1050
Eco130I CCWWGG 3 cut(s) 363, 1049, 1129
Eco47I GGWCC 2 cut(s) 1012, 1531
Eco57I CTGAAG 1 cut(s) 1625
Eco91I GGTNACC 1 cut(s) 1645
EcoO65I GGTNACC 1 cut(s) 1645
EcoRI GAATTC 2 cut(s) 106, 725
EcoRII CCWGG 1 cut(s) 936
EcoT14I CCWWGG 3 cut(s) 363, 1049, 1129
EcoT22I ATGCAT 2 cut(s) 843, 1070
ErhI CCWWGG 3 cut(s) 363, 1049, 1129
FalI AAGNNNNNCTT 4 cut(s) 429, 461, 813, 845
FaqI GGGAC 1 cut(s) 536
FauNDI CATATG 1 cut(s) 13
Fnu4HI GCNGC 7 cut(s) 98, 101, 255, 705, 1003, 1460, 1572
FokI GGATG 6 cut(s) 494, 766, 915, 1175, 1540, 1603
Fsp4HI GCNGC 7 cut(s) 98, 101, 255, 705, 1003, 1460, 1572
FspAI RTGCGCAY 1 cut(s) 1405
FspBI CTAG 5 cut(s) 173, 551, 969, 1409, 1463
FspI TGCGCA 1 cut(s) 1405
GlaI GCGC 1 cut(s) 1405
GluI GCNGC 7 cut(s) 98, 101, 255, 705, 1003, 1460, 1572
GsuI CTGGAG 2 cut(s) 560, 1470
HaeIII GGCC 4 cut(s) 371, 383, 546, 1459
HapII CCGG 3 cut(s) 131, 520, 1516
HgaI GACGC 1 cut(s) 1563
HhaI GCGC 1 cut(s) 1406
Hin6I GCGC 1 cut(s) 1404
HinP1I GCGC 1 cut(s) 1404
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HindIII AAGCTT 4 cut(s) 397, 709, 1307, 1601
HinfI GANTC 8 cut(s) 149, 557, 826, 965, 1135, 1319, 1522, 1580
HpaII CCGG 3 cut(s) 131, 520, 1516
HphI GGTGA 3 cut(s) 616, 1199, 1231
Hpy166II GTNNAC 2 cut(s) 222, 1330
Hpy188I TCNGA 7 cut(s) 73, 768, 1230, 1324, 1527, 1579, 1610
Hpy188III TCNNGA 7 cut(s) 173, 511, 613, 746, 913, 962, 1286
Hpy8I GTNNAC 2 cut(s) 222, 1330
HpyAV CCTTC 3 cut(s) 791, 795, 1112
HpyCH4III ACNGT 2 cut(s) 571, 1661
HpyCH4IV ACGT 1 cut(s) 1440
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 1023, 1465, 1490
HpyF3I CTNAG 8 cut(s) 180, 408, 532, 686, 765, 1489, 1578, 1596
HpySE526I ACGT 1 cut(s) 1440
HspAI GCGC 1 cut(s) 1404
Kzo9I GATC 6 cut(s) 205, 591, 750, 1225, 1255, 1282
LmnI GCTCC 2 cut(s) 133, 1042
Lsp1109I GCAGC 6 cut(s) 84, 87, 266, 691, 1014, 1558
LweI GCATC 6 cut(s) 166, 349, 937, 1153, 1206, 1431
MabI ACCWGGT 1 cut(s) 936
MaeI CTAG 5 cut(s) 173, 551, 969, 1409, 1463
MaeII ACGT 1 cut(s) 1440
MaeIII GTNAC 5 cut(s) 277, 940, 972, 1148, 1645
MalI GATC 6 cut(s) 207, 593, 752, 1227, 1257, 1284
MboI GATC 6 cut(s) 205, 591, 750, 1225, 1255, 1282
MflI RGATCY 3 cut(s) 205, 1225, 1282
MhlI GDGCHC 2 cut(s) 88, 138
MlyI GAGTC 2 cut(s) 566, 1589
MmeI TCCRAC 3 cut(s) 414, 1253, 1416
Mph1103I ATGCAT 2 cut(s) 843, 1070
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 5 cut(s) 140, 573, 993, 1208, 1361
MslI CAYNNNNRTG 1 cut(s) 840
MspA1I CMGCKG 2 cut(s) 257, 1448
MspCI CTTAAG 1 cut(s) 139
MspI CCGG 3 cut(s) 131, 520, 1516
MspR9I CCNGG 2 cut(s) 521, 938
MvaI CCWGG 1 cut(s) 938
MwoI GCNNNNNNNGC 4 cut(s) 368, 1023, 1465, 1490
NciI CCSGG 1 cut(s) 521
NcoI CCATGG 3 cut(s) 363, 1049, 1129
NdeI CATATG 1 cut(s) 13
NdeII GATC 6 cut(s) 205, 591, 750, 1225, 1255, 1282
NlaIV GGNNCC 3 cut(s) 129, 1038, 1284
NmuCI GTSAC 1 cut(s) 972
NsbI TGCGCA 1 cut(s) 1405
NsiI ATGCAT 2 cut(s) 843, 1070
NspI RCATGY 5 cut(s) 646, 841, 845, 1068, 1657
NspV TTCGAA 1 cut(s) 1060
PciI ACATGT 1 cut(s) 1653
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 6 cut(s) 149, 826, 965, 1135, 1319, 1522
PfoI TCCNGGA 1 cut(s) 519
PinAI ACCGGT 1 cut(s) 1515
PkrI GCNGC 7 cut(s) 99, 102, 256, 706, 1004, 1461, 1573
PleI GAGTC 2 cut(s) 565, 1588
PpsI GAGTC 2 cut(s) 565, 1588
PscI ACATGT 1 cut(s) 1653
PsiI TTATAA 1 cut(s) 819
Psp6I CCWGG 1 cut(s) 936
PspEI GGTNACC 1 cut(s) 1645
PspGI CCWGG 1 cut(s) 936
PspN4I GGNNCC 3 cut(s) 129, 1038, 1284
PspPI GGNCC 3 cut(s) 544, 1012, 1531
PsuI RGATCY 3 cut(s) 205, 1225, 1282
PvuII CAGCTG 2 cut(s) 257, 1448
RsaI GTAC 4 cut(s) 5, 145, 568, 1658
RsaNI GTAC 4 cut(s) 4, 144, 567, 1657
RseI CAYNNNNRTG 1 cut(s) 840
SaqAI TTAA 5 cut(s) 140, 573, 993, 1208, 1361
SatI GCNGC 7 cut(s) 98, 101, 255, 705, 1003, 1460, 1572
Sau3AI GATC 6 cut(s) 205, 591, 750, 1225, 1255, 1282
Sau96I GGNCC 3 cut(s) 544, 1012, 1531
SchI GAGTC 2 cut(s) 566, 1589
ScrFI CCNGG 2 cut(s) 521, 938
SduI GDGCHC 2 cut(s) 88, 138
SexAI ACCWGGT 1 cut(s) 936
SfaNI GCATC 6 cut(s) 166, 349, 937, 1153, 1206, 1431
SfuI TTCGAA 1 cut(s) 1060
SinI GGWCC 2 cut(s) 1012, 1531
SmiMI CAYNNNNRTG 1 cut(s) 840
SmlI CTYRAG 4 cut(s) 139, 746, 913, 1007
SmoI CTYRAG 4 cut(s) 139, 746, 913, 1007
SsiI CCGC 5 cut(s) 602, 650, 722, 1015, 1460
SspMI CTAG 5 cut(s) 173, 551, 969, 1409, 1463
StyD4I CCNGG 2 cut(s) 519, 936
StyI CCWWGG 3 cut(s) 363, 1049, 1129
TaaI ACNGT 2 cut(s) 571, 1661
TaiI ACGT 1 cut(s) 1443
TaqI TCGA 3 cut(s) 1060, 1109, 1589
TatI WGTACW 4 cut(s) 3, 143, 566, 1656
TauI GCSGC 1 cut(s) 1462
TfiI GAWTC 6 cut(s) 149, 826, 965, 1135, 1319, 1522
Tru1I TTAA 5 cut(s) 140, 573, 993, 1208, 1361
Tru9I TTAA 5 cut(s) 140, 573, 993, 1208, 1361
TscAI CASTG 1 cut(s) 1432
TseFI GTSAC 1 cut(s) 972
TseI GCWGC 6 cut(s) 97, 100, 254, 704, 1002, 1571
Tsp45I GTSAC 1 cut(s) 972
TspDTI ATGAA 5 cut(s) 210, 498, 999, 1236, 1554
TspRI CASTG 1 cut(s) 1432
Vha464I CTTAAG 1 cut(s) 139
VpaK11BI GGWCC 2 cut(s) 1012, 1531
XapI RAATTY 5 cut(s) 106, 320, 725, 769, 1056
XbaI TCTAGA 1 cut(s) 172
XceI RCATGY 5 cut(s) 646, 841, 845, 1068, 1657
XcmI CCANNNNNNNNNTGG 1 cut(s) 1047
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 5 cut(s) 173, 551, 969, 1409, 1463
Zsp2I ATGCAT 2 cut(s) 843, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.