U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49060 AT3G49060 AT3G49060 |
| fragaria_vesca | FvH4_7g29840 FvH4_7g29840 FvH4_7g29840 FvH4_7g29840 FvH4_7g29840 FvH4_7g29840 |
| malus_domestica | MD01G1205000.v1.1 |
| prunus_persica | Prupe.2G297400_v2.0.a1 |
| pyrus_communis | pycom01g21460 |
| rosa_chinensis | RchiOBHm_Chr1g0377811 |
| rosa_laevigata | RLG00000026496 |
| rosa_multiflora | Rmu_co8492821.1_g000001 Rmu_sc0004824.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00281040 |
| rosa_rugosa | Rorug01G0405200 |
| rosa_samantha | Rh1AG427100 Rh1BG382200 Rh1CG396100 Rh1DG413200 |
| rosa_wichuraiana | Rw1G037150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1284 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2003 |
| Acc16I | TGCGCA | 1 cut(s) | 1870 |
| AccBSI | CCGCTC | 1 cut(s) | 2187 |
| AciI | CCGC | 8 cut(s) | 56, 148, 393, 542, 1067, 1480, 1925, 2187 |
| AclWI | GGATC | 5 cut(s) | 1685, 1715, 1742, 1755, 2117 |
| AcoI | YGGCCR | 2 cut(s) | 469, 1922 |
| AcsI | RAATTY | 6 cut(s) | 181, 547, 785, 1190, 1234, 1521 |
| AcuI | CTGAAG | 2 cut(s) | 2090, 2240 |
| AfaI | GTAC | 5 cut(s) | 249, 586, 1033, 1757, 2197 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1334, 1366, 1844 |
| AflII | CTTAAG | 1 cut(s) | 580 |
| AgeI | ACCGGT | 1 cut(s) | 1980 |
| AgsI | TTSAA | 8 cut(s) | 14, 287, 791, 860, 943, 1987, 2182, 2270 |
| AjiI | CACGTC | 2 cut(s) | 70, 142 |
| AjnI | CCWGG | 1 cut(s) | 1401 |
| Alw21I | GWGCWC | 2 cut(s) | 579, 2223 |
| Alw26I | GTCTC | 4 cut(s) | 35, 486, 1757, 1911 |
| AlwI | GGATC | 5 cut(s) | 1685, 1715, 1742, 1755, 2117 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 644 |
| AoxI | GGCC | 6 cut(s) | 99, 469, 834, 846, 1009, 1922 |
| ApeKI | GCWGC | 9 cut(s) | 329, 332, 434, 538, 719, 1169, 1467, 2036, 2135 |
| ApoI | RAATTY | 6 cut(s) | 181, 547, 785, 1190, 1234, 1521 |
| AseI | ATTAAT | 1 cut(s) | 695 |
| AsiGI | ACCGGT | 1 cut(s) | 1980 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 594 |
| AspLEI | GCGC | 2 cut(s) | 1871, 2254 |
| AspS9I | GGNCC | 5 cut(s) | 99, 403, 1009, 1477, 1996 |
| AsuC2I | CCSGG | 1 cut(s) | 986 |
| AsuHPI | GGTGA | 3 cut(s) | 1081, 1664, 1696 |
| AsuII | TTCGAA | 1 cut(s) | 1525 |
| AsuNHI | GCTAGC | 1 cut(s) | 437 |
| AvaII | GGWCC | 3 cut(s) | 403, 1477, 1996 |
| BaeGI | GKGCMC | 1 cut(s) | 526 |
| BalI | TGGCCA | 1 cut(s) | 471 |
| BamHI | GGATCC | 1 cut(s) | 1747 |
| BanII | GRGCYC | 1 cut(s) | 2223 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2151, 2183 |
| Bbv12I | GWGCWC | 2 cut(s) | 579, 2223 |
| BbvCI | CCTCAGC | 1 cut(s) | 645 |
| BbvI | GCAGC | 9 cut(s) | 319, 341, 446, 525, 731, 1156, 1479, 2023, 2147 |
| BccI | CCATC | 7 cut(s) | 253, 316, 1252, 1987, 2089, 2135, 2169 |
| BceAI | ACGGC | 1 cut(s) | 86 |
| BciT130I | CCWGG | 1 cut(s) | 1403 |
| BcnI | CCSGG | 1 cut(s) | 986 |
| BcoDI | GTCTC | 4 cut(s) | 35, 486, 1757, 1911 |
| BfaI | CTAG | 6 cut(s) | 438, 614, 1016, 1434, 1874, 1928 |
| BfmI | CTRYAG | 3 cut(s) | 333, 636, 2282 |
| BfrI | CTTAAG | 1 cut(s) | 580 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 833, 1488 |
| BglII | AGATCT | 2 cut(s) | 632, 670 |
| BlpI | GCTNAGC | 1 cut(s) | 1151 |
| BmcAI | AGTACT | 1 cut(s) | 2197 |
| Bme1390I | CCNGG | 2 cut(s) | 986, 1403 |
| Bme18I | GGWCC | 3 cut(s) | 403, 1477, 1996 |
| BmgBI | CACGTC | 2 cut(s) | 70, 142 |
| BmgT120I | GGNCC | 5 cut(s) | 99, 403, 1009, 1477, 1996 |
| BmiI | GGNNCC | 3 cut(s) | 570, 1749, 2241 |
| BmrFI | CCNGG | 2 cut(s) | 986, 1403 |
| BmsI | GCATC | 6 cut(s) | 631, 814, 1402, 1618, 1671, 1896 |
| BmtI | GCTAGC | 1 cut(s) | 441 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2036, 2068 |
| BpmI | CTGGAG | 2 cut(s) | 1025, 1935 |
| Bpu10I | CCTNAGC | 1 cut(s) | 645 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1151 |
| Bpu14I | TTCGAA | 1 cut(s) | 1525 |
| BpuEI | CTTGAG | 4 cut(s) | 1232, 1399, 1493, 2237 |
| BpuMI | CCSGG | 1 cut(s) | 986 |
| BsaAI | YACGTR | 2 cut(s) | 1759, 2129 |
| BsaBI | GATNNNNATC | 1 cut(s) | 218 |
| BsaI | GGTCTC | 1 cut(s) | 35 |
| BsaJI | CCNNGG | 3 cut(s) | 828, 1514, 1594 |
| BsaWI | WCCGGW | 2 cut(s) | 571, 1980 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 177, 207, 216, 246, 1967, 1997 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1334, 1366, 1844 |
| Bse118I | RCCGGY | 1 cut(s) | 1980 |
| Bse1I | ACTGG | 2 cut(s) | 562, 1925 |
| Bse3DI | GCAATG | 3 cut(s) | 1034, 1533, 1965 |
| Bse8I | GATNNNNATC | 1 cut(s) | 218 |
| BseBI | CCWGG | 1 cut(s) | 1403 |
| BseDI | CCNNGG | 3 cut(s) | 828, 1514, 1594 |
| BseGI | GGATG | 8 cut(s) | 37, 952, 1244, 1393, 1633, 1998, 2081, 2180 |
| BseJI | GATNNNNATC | 1 cut(s) | 218 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1334, 1366, 1844 |
| BseMI | GCAATG | 3 cut(s) | 1034, 1533, 1965 |
| BseMII | CTCAG | 3 cut(s) | 636, 1244, 2034 |
| BseNI | ACTGG | 2 cut(s) | 562, 1925 |
| BseRI | GAGGAG | 4 cut(s) | 287, 722, 1064, 1988 |
| BseSI | GKGCMC | 1 cut(s) | 526 |
| BseXI | GCAGC | 9 cut(s) | 319, 341, 446, 525, 731, 1156, 1479, 2023, 2147 |
| BsgI | GTGCAG | 2 cut(s) | 254, 1206 |
| BshFI | GGCC | 6 cut(s) | 101, 471, 836, 848, 1011, 1924 |
| BshTI | ACCGGT | 1 cut(s) | 1980 |
| BsiHKAI | GWGCWC | 2 cut(s) | 579, 2223 |
| BsiSI | CCGG | 3 cut(s) | 572, 985, 1981 |
| BslFI | GGGAC | 2 cut(s) | 77, 1001 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1334, 1366, 1844 |
| BsmAI | GTCTC | 4 cut(s) | 35, 486, 1757, 1911 |
| BsmFI | GGGAC | 2 cut(s) | 77, 1001 |
| BsnI | GGCC | 6 cut(s) | 101, 471, 836, 848, 1011, 1924 |
| Bso31I | GGTCTC | 1 cut(s) | 35 |
| Bsp119I | TTCGAA | 1 cut(s) | 1525 |
| Bsp1286I | GDGCHC | 3 cut(s) | 526, 579, 2223 |
| Bsp1407I | TGTACA | 1 cut(s) | 1031 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1151 |
| Bsp19I | CCATGG | 3 cut(s) | 828, 1514, 1594 |
| BspACI | CCGC | 8 cut(s) | 56, 148, 393, 542, 1067, 1480, 1925, 2187 |
| BspANI | GGCC | 6 cut(s) | 101, 471, 836, 848, 1011, 1924 |
| BspCNI | CTCAG | 3 cut(s) | 637, 1243, 2035 |
| BspHI | TCATGA | 1 cut(s) | 2115 |
| BspLI | GGNNCC | 3 cut(s) | 570, 1749, 2241 |
| BspMAI | CTGCAG | 2 cut(s) | 337, 640 |
| BspOI | GCTAGC | 1 cut(s) | 441 |
| BspPI | GGATC | 5 cut(s) | 1685, 1715, 1742, 1755, 2117 |
| BspQI | GCTCTTC | 1 cut(s) | 12 |
| BspT104I | TTCGAA | 1 cut(s) | 1525 |
| BspTI | CTTAAG | 1 cut(s) | 580 |
| BspTNI | GGTCTC | 1 cut(s) | 35 |
| BsrBI | CCGCTC | 1 cut(s) | 2187 |
| BsrDI | GCAATG | 3 cut(s) | 1034, 1533, 1965 |
| BsrFI | RCCGGY | 1 cut(s) | 1980 |
| BsrGI | TGTACA | 1 cut(s) | 1031 |
| BsrI | ACTGG | 2 cut(s) | 562, 1925 |
| BssAI | RCCGGY | 1 cut(s) | 1980 |
| BssECI | CCNNGG | 3 cut(s) | 828, 1514, 1594 |
| BssT1I | CCWWGG | 3 cut(s) | 828, 1514, 1594 |
| Bst2UI | CCWGG | 1 cut(s) | 1403 |
| Bst4CI | ACNGT | 5 cut(s) | 46, 1036, 2195, 2274, 2286 |
| Bst6I | CTCTTC | 4 cut(s) | 12, 33, 1515, 2154 |
| BstAFI | CTTAAG | 1 cut(s) | 580 |
| BstAUI | TGTACA | 1 cut(s) | 1031 |
| BstBAI | YACGTR | 2 cut(s) | 1759, 2129 |
| BstBI | TTCGAA | 1 cut(s) | 1525 |
| BstC8I | GCNNGC | 9 cut(s) | 237, 374, 439, 750, 912, 1113, 1174, 1489, 1935 |
| BstDEI | CTNAG | 8 cut(s) | 645, 873, 997, 1151, 1230, 1954, 2043, 2061 |
| BstDSI | CCRYGG | 3 cut(s) | 828, 1514, 1594 |
| BstF5I | GGATG | 8 cut(s) | 37, 952, 1244, 1393, 1633, 1998, 2081, 2180 |
| BstHHI | GCGC | 2 cut(s) | 1871, 2254 |
| BstMAI | GTCTC | 4 cut(s) | 35, 486, 1757, 1911 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 833, 1488, 1930, 1955 |
| BstNI | CCWGG | 1 cut(s) | 1403 |
| BstNSI | RCATGY | 4 cut(s) | 1111, 1306, 1310, 1533 |
| BstSCI | CCNGG | 2 cut(s) | 984, 1401 |
| BstSFI | CTRYAG | 3 cut(s) | 333, 636, 2282 |
| BstSLI | GKGCMC | 1 cut(s) | 526 |
| BstV1I | GCAGC | 9 cut(s) | 319, 341, 446, 525, 731, 1156, 1479, 2023, 2147 |
| BstX2I | RGATCY | 4 cut(s) | 632, 670, 1690, 1747 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1256 |
| BstYI | RGATCY | 4 cut(s) | 632, 670, 1690, 1747 |
| BsuRI | GGCC | 6 cut(s) | 101, 471, 836, 848, 1011, 1924 |
| BtgI | CCRYGG | 3 cut(s) | 828, 1514, 1594 |
| BtrI | CACGTC | 2 cut(s) | 70, 142 |
| BtsCI | GGATG | 8 cut(s) | 37, 952, 1244, 1393, 1633, 1998, 2081, 2180 |
| BtsI | GCAGTG | 1 cut(s) | 2227 |
| BtsIMutI | CAGTG | 3 cut(s) | 1897, 2227, 2279 |
| Cac8I | GCNNGC | 9 cut(s) | 237, 374, 439, 750, 912, 1113, 1174, 1489, 1935 |
| CaiI | CAGNNNCTG | 1 cut(s) | 644 |
| CciI | TCATGA | 1 cut(s) | 2115 |
| CfoI | GCGC | 2 cut(s) | 1871, 2254 |
| Cfr10I | RCCGGY | 1 cut(s) | 1980 |
| Cfr13I | GGNCC | 5 cut(s) | 99, 403, 1009, 1477, 1996 |
| CseI | GACGC | 2 cut(s) | 97, 2028 |
| CsiI | ACCWGGT | 1 cut(s) | 1401 |
| Csp6I | GTAC | 5 cut(s) | 248, 585, 1032, 1756, 2196 |
| CspAI | ACCGGT | 1 cut(s) | 1980 |
| CviQI | GTAC | 5 cut(s) | 248, 585, 1032, 1756, 2196 |
| DdeI | CTNAG | 8 cut(s) | 645, 873, 997, 1151, 1230, 1954, 2043, 2061 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2003 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2003 |
| EaeI | YGGCCR | 2 cut(s) | 469, 1922 |
| Eam1104I | CTCTTC | 4 cut(s) | 12, 33, 1515, 2154 |
| EarI | CTCTTC | 4 cut(s) | 12, 33, 1515, 2154 |
| EciI | GGCGGA | 1 cut(s) | 408 |
| Ecl136II | GAGCTC | 1 cut(s) | 2221 |
| Eco130I | CCWWGG | 3 cut(s) | 828, 1514, 1594 |
| Eco24I | GRGCYC | 1 cut(s) | 2223 |
| Eco31I | GGTCTC | 1 cut(s) | 35 |
| Eco47I | GGWCC | 3 cut(s) | 403, 1477, 1996 |
| Eco53kI | GAGCTC | 1 cut(s) | 2221 |
| Eco57I | CTGAAG | 2 cut(s) | 2090, 2240 |
| EcoICRI | GAGCTC | 1 cut(s) | 2221 |
| EcoRI | GAATTC | 2 cut(s) | 547, 1190 |
| EcoRII | CCWGG | 1 cut(s) | 1401 |
| EcoT14I | CCWWGG | 3 cut(s) | 828, 1514, 1594 |
| EcoT22I | ATGCAT | 2 cut(s) | 1308, 1535 |
| EcoT38I | GRGCYC | 1 cut(s) | 2223 |
| ErhI | CCWWGG | 3 cut(s) | 828, 1514, 1594 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 894, 926, 1278, 1310 |
| FaqI | GGGAC | 2 cut(s) | 77, 1001 |
| FauNDI | CATATG | 1 cut(s) | 2152 |
| FokI | GGATG | 8 cut(s) | 44, 959, 1231, 1380, 1640, 2005, 2068, 2187 |
| FriOI | GRGCYC | 1 cut(s) | 2223 |
| FspAI | RTGCGCAY | 1 cut(s) | 1870 |
| FspBI | CTAG | 6 cut(s) | 438, 614, 1016, 1434, 1874, 1928 |
| FspI | TGCGCA | 1 cut(s) | 1870 |
| GlaI | GCGC | 2 cut(s) | 1870, 2253 |
| GsuI | CTGGAG | 2 cut(s) | 1025, 1935 |
| HaeIII | GGCC | 6 cut(s) | 101, 471, 836, 848, 1011, 1924 |
| HapII | CCGG | 3 cut(s) | 572, 985, 1981 |
| HgaI | GACGC | 2 cut(s) | 97, 2028 |
| HhaI | GCGC | 2 cut(s) | 1871, 2254 |
| Hin6I | GCGC | 2 cut(s) | 1869, 2252 |
| HinP1I | GCGC | 2 cut(s) | 1869, 2252 |
| HincII | GTYRAC | 1 cut(s) | 687 |
| HindII | GTYRAC | 1 cut(s) | 687 |
| HindIII | AAGCTT | 4 cut(s) | 862, 1174, 1772, 2066 |
| HinfI | GANTC | 9 cut(s) | 214, 590, 1022, 1291, 1430, 1600, 1784, 1987, 2045 |
| HpaII | CCGG | 3 cut(s) | 572, 985, 1981 |
| HphI | GGTGA | 3 cut(s) | 1081, 1664, 1696 |
| Hpy166II | GTNNAC | 3 cut(s) | 145, 687, 1795 |
| Hpy8I | GTNNAC | 3 cut(s) | 145, 687, 1795 |
| Hpy99I | CGWCG | 3 cut(s) | 71, 91, 119 |
| HpyAV | CCTTC | 6 cut(s) | 146, 162, 937, 1256, 1260, 1577 |
| HpyCH4III | ACNGT | 5 cut(s) | 46, 1036, 2195, 2274, 2286 |
| HpyCH4IV | ACGT | 5 cut(s) | 69, 141, 1758, 1905, 2128 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 833, 1488, 1930, 1955 |
| HpyF3I | CTNAG | 8 cut(s) | 645, 873, 997, 1151, 1230, 1954, 2043, 2061 |
| HpySE526I | ACGT | 5 cut(s) | 69, 141, 1758, 1905, 2128 |
| HspAI | GCGC | 2 cut(s) | 1869, 2252 |
| LguI | GCTCTTC | 1 cut(s) | 12 |
| LmnI | GCTCC | 5 cut(s) | 6, 224, 446, 574, 1507 |
| Lsp1109I | GCAGC | 9 cut(s) | 319, 341, 446, 525, 731, 1156, 1479, 2023, 2147 |
| LweI | GCATC | 6 cut(s) | 631, 814, 1402, 1618, 1671, 1896 |
| MabI | ACCWGGT | 1 cut(s) | 1401 |
| MaeI | CTAG | 6 cut(s) | 438, 614, 1016, 1434, 1874, 1928 |
| MaeII | ACGT | 5 cut(s) | 69, 141, 1758, 1905, 2128 |
| MaeIII | GTNAC | 7 cut(s) | 616, 624, 742, 1405, 1437, 1613, 2144 |
| MbiI | CCGCTC | 1 cut(s) | 2187 |
| MflI | RGATCY | 4 cut(s) | 632, 670, 1690, 1747 |
| MhlI | GDGCHC | 3 cut(s) | 526, 579, 2223 |
| MlsI | TGGCCA | 1 cut(s) | 471 |
| MluNI | TGGCCA | 1 cut(s) | 471 |
| MlyI | GAGTC | 2 cut(s) | 1031, 2054 |
| MmeI | TCCRAC | 3 cut(s) | 879, 1718, 1881 |
| Mox20I | TGGCCA | 1 cut(s) | 471 |
| Mph1103I | ATGCAT | 2 cut(s) | 1308, 1535 |
| MroXI | GAANNNNTTC | 1 cut(s) | 594 |
| MscI | TGGCCA | 1 cut(s) | 471 |
| MseI | TTAA | 5 cut(s) | 581, 695, 1458, 1673, 1826 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1305 |
| Msp20I | TGGCCA | 1 cut(s) | 471 |
| MspA1I | CMGCKG | 4 cut(s) | 332, 544, 722, 1913 |
| MspCI | CTTAAG | 1 cut(s) | 580 |
| MspI | CCGG | 3 cut(s) | 572, 985, 1981 |
| MspR9I | CCNGG | 2 cut(s) | 986, 1403 |
| MvaI | CCWGG | 1 cut(s) | 1403 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 833, 1488, 1930, 1955 |
| NciI | CCSGG | 1 cut(s) | 986 |
| NcoI | CCATGG | 3 cut(s) | 828, 1514, 1594 |
| NdeI | CATATG | 1 cut(s) | 2152 |
| NheI | GCTAGC | 1 cut(s) | 437 |
| NlaIV | GGNNCC | 3 cut(s) | 570, 1749, 2241 |
| NmeAIII | GCCGAG | 1 cut(s) | 277 |
| NmuCI | GTSAC | 2 cut(s) | 616, 1437 |
| NsbI | TGCGCA | 1 cut(s) | 1870 |
| NsiI | ATGCAT | 2 cut(s) | 1308, 1535 |
| NspI | RCATGY | 4 cut(s) | 1111, 1306, 1310, 1533 |
| NspV | TTCGAA | 1 cut(s) | 1525 |
| PagI | TCATGA | 1 cut(s) | 2115 |
| PciSI | GCTCTTC | 1 cut(s) | 12 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 300 |
| PdmI | GAANNNNTTC | 1 cut(s) | 594 |
| PfeI | GAWTC | 7 cut(s) | 214, 590, 1291, 1430, 1600, 1784, 1987 |
| PfoI | TCCNGGA | 1 cut(s) | 984 |
| PinAI | ACCGGT | 1 cut(s) | 1980 |
| PleI | GAGTC | 2 cut(s) | 1030, 2053 |
| PpsI | GAGTC | 2 cut(s) | 1030, 2053 |
| Ppu21I | YACGTR | 2 cut(s) | 1759, 2129 |
| PshBI | ATTAAT | 1 cut(s) | 695 |
| PsiI | TTATAA | 1 cut(s) | 1284 |
| Psp124BI | GAGCTC | 1 cut(s) | 2223 |
| Psp6I | CCWGG | 1 cut(s) | 1401 |
| PspGI | CCWGG | 1 cut(s) | 1401 |
| PspN4I | GGNNCC | 3 cut(s) | 570, 1749, 2241 |
| PspPI | GGNCC | 5 cut(s) | 99, 403, 1009, 1477, 1996 |
| PstI | CTGCAG | 2 cut(s) | 337, 640 |
| PstNI | CAGNNNCTG | 1 cut(s) | 644 |
| PsuI | RGATCY | 4 cut(s) | 632, 670, 1690, 1747 |
| PvuII | CAGCTG | 3 cut(s) | 332, 722, 1913 |
| RsaI | GTAC | 5 cut(s) | 249, 586, 1033, 1757, 2197 |
| RsaNI | GTAC | 5 cut(s) | 248, 585, 1032, 1756, 2196 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1305 |
| SacI | GAGCTC | 1 cut(s) | 2223 |
| SapI | GCTCTTC | 1 cut(s) | 12 |
| SaqAI | TTAA | 5 cut(s) | 581, 695, 1458, 1673, 1826 |
| Sau96I | GGNCC | 5 cut(s) | 99, 403, 1009, 1477, 1996 |
| ScaI | AGTACT | 1 cut(s) | 2197 |
| SchI | GAGTC | 2 cut(s) | 1031, 2054 |
| ScrFI | CCNGG | 2 cut(s) | 986, 1403 |
| SduI | GDGCHC | 3 cut(s) | 526, 579, 2223 |
| SexAI | ACCWGGT | 1 cut(s) | 1401 |
| SfaNI | GCATC | 6 cut(s) | 631, 814, 1402, 1618, 1671, 1896 |
| SfcI | CTRYAG | 3 cut(s) | 333, 636, 2282 |
| SfuI | TTCGAA | 1 cut(s) | 1525 |
| SinI | GGWCC | 3 cut(s) | 403, 1477, 1996 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1305 |
| SmlI | CTYRAG | 5 cut(s) | 580, 1211, 1378, 1472, 2216 |
| SmoI | CTYRAG | 5 cut(s) | 580, 1211, 1378, 1472, 2216 |
| SsiI | CCGC | 8 cut(s) | 56, 148, 393, 542, 1067, 1480, 1925, 2187 |
| SspI | AATATT | 1 cut(s) | 344 |
| SspMI | CTAG | 6 cut(s) | 438, 614, 1016, 1434, 1874, 1928 |
| SstI | GAGCTC | 1 cut(s) | 2223 |
| StyD4I | CCNGG | 2 cut(s) | 984, 1401 |
| StyI | CCWWGG | 3 cut(s) | 828, 1514, 1594 |
| TaaI | ACNGT | 5 cut(s) | 46, 1036, 2195, 2274, 2286 |
| TaiI | ACGT | 5 cut(s) | 72, 144, 1761, 1908, 2131 |
| TaqI | TCGA | 4 cut(s) | 1525, 1574, 2054, 2223 |
| TatI | WGTACW | 3 cut(s) | 584, 1031, 2195 |
| TauI | GCSGC | 2 cut(s) | 544, 1927 |
| TfiI | GAWTC | 7 cut(s) | 214, 590, 1291, 1430, 1600, 1784, 1987 |
| Tru1I | TTAA | 5 cut(s) | 581, 695, 1458, 1673, 1826 |
| Tru9I | TTAA | 5 cut(s) | 581, 695, 1458, 1673, 1826 |
| TscAI | CASTG | 3 cut(s) | 1897, 2234, 2279 |
| TseFI | GTSAC | 2 cut(s) | 616, 1437 |
| TseI | GCWGC | 9 cut(s) | 329, 332, 434, 538, 719, 1169, 1467, 2036, 2135 |
| Tsp45I | GTSAC | 2 cut(s) | 616, 1437 |
| TspGWI | ACGGA | 1 cut(s) | 265 |
| TspRI | CASTG | 3 cut(s) | 1897, 2234, 2279 |
| Vha464I | CTTAAG | 1 cut(s) | 580 |
| VpaK11BI | GGWCC | 3 cut(s) | 403, 1477, 1996 |
| VspI | ATTAAT | 1 cut(s) | 695 |
| XapI | RAATTY | 6 cut(s) | 181, 547, 785, 1190, 1234, 1521 |
| XceI | RCATGY | 4 cut(s) | 1111, 1306, 1310, 1533 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1512 |
| XmnI | GAANNNNTTC | 1 cut(s) | 594 |
| XspI | CTAG | 6 cut(s) | 438, 614, 1016, 1434, 1874, 1928 |
| ZrmI | AGTACT | 1 cut(s) | 2197 |
| Zsp2I | ATGCAT | 2 cut(s) | 1308, 1535 |