U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49060 AT3G49060 AT3G49060 |
| fragaria_vesca | FvH4_7g29840 FvH4_7g29840 FvH4_7g29840 FvH4_7g29840 FvH4_7g29840 FvH4_7g29840 |
| malus_domestica | MD01G1205000.v1.1 |
| prunus_persica | Prupe.2G297400_v2.0.a1 |
| pyrus_communis | pycom01g21460 |
| rosa_chinensis | RchiOBHm_Chr1g0377811 |
| rosa_laevigata | RLG00000026496 |
| rosa_multiflora | Rmu_co8492821.1_g000001 Rmu_sc0004824.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00281040 |
| rosa_rugosa | Rorug01G0405200 |
| rosa_samantha | Rh1AG427100 Rh1BG382200 Rh1CG396100 Rh1DG413200 |
| rosa_wichuraiana | Rw1G037150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1227 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1946 |
| Acc16I | TGCGCA | 1 cut(s) | 1813 |
| AccB1I | GGYRCC | 1 cut(s) | 767 |
| AciI | CCGC | 5 cut(s) | 56, 362, 1010, 1423, 1868 |
| AclWI | GGATC | 4 cut(s) | 1628, 1685, 1698, 1938 |
| AcoI | YGGCCR | 3 cut(s) | 439, 1638, 1865 |
| AcsI | RAATTY | 6 cut(s) | 181, 514, 728, 1133, 1177, 1464 |
| AcuI | CTGAAG | 1 cut(s) | 2033 |
| AfaI | GTAC | 3 cut(s) | 249, 553, 976 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1277, 1309, 1787 |
| AflII | CTTAAG | 1 cut(s) | 547 |
| AflIII | ACRYGT | 1 cut(s) | 2061 |
| AgeI | ACCGGT | 1 cut(s) | 1923 |
| AgsI | TTSAA | 5 cut(s) | 14, 287, 734, 803, 886 |
| AjiI | CACGTC | 2 cut(s) | 70, 1992 |
| AjnI | CCWGG | 2 cut(s) | 867, 1344 |
| Alw21I | GWGCWC | 2 cut(s) | 546, 1997 |
| Alw26I | GTCTC | 4 cut(s) | 35, 1700, 1854, 1982 |
| AlwI | GGATC | 4 cut(s) | 1628, 1685, 1698, 1938 |
| Ama87I | CYCGRG | 1 cut(s) | 1703 |
| AoxI | GGCC | 7 cut(s) | 99, 439, 777, 789, 952, 1638, 1865 |
| ApeKI | GCWGC | 9 cut(s) | 329, 332, 404, 505, 508, 662, 1112, 1410, 1979 |
| ApoI | RAATTY | 6 cut(s) | 181, 514, 728, 1133, 1177, 1464 |
| AsiGI | ACCGGT | 1 cut(s) | 1923 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 561 |
| AspLEI | GCGC | 1 cut(s) | 1814 |
| AspS9I | GGNCC | 5 cut(s) | 99, 372, 952, 1420, 1939 |
| AsuHPI | GGTGA | 4 cut(s) | 137, 1024, 1607, 1639 |
| AsuII | TTCGAA | 1 cut(s) | 1468 |
| AvaI | CYCGRG | 1 cut(s) | 1703 |
| AvaII | GGWCC | 3 cut(s) | 372, 1420, 1939 |
| BaeGI | GKGCMC | 1 cut(s) | 496 |
| BalI | TGGCCA | 1 cut(s) | 441 |
| BamHI | GGATCC | 1 cut(s) | 1690 |
| BanI | GGYRCC | 1 cut(s) | 767 |
| Bbv12I | GWGCWC | 2 cut(s) | 546, 1997 |
| BbvCI | CCTCAGC | 1 cut(s) | 588 |
| BbvI | GCAGC | 9 cut(s) | 319, 341, 416, 492, 495, 674, 1099, 1422, 1966 |
| BccI | CCATC | 8 cut(s) | 53, 253, 316, 637, 758, 1195, 1930, 2032 |
| BceAI | ACGGC | 1 cut(s) | 86 |
| BciT130I | CCWGG | 2 cut(s) | 869, 1346 |
| BcoDI | GTCTC | 4 cut(s) | 35, 1700, 1854, 1982 |
| BfaI | CTAG | 7 cut(s) | 408, 581, 621, 959, 1377, 1817, 1871 |
| BfmI | CTRYAG | 1 cut(s) | 333 |
| BfrI | CTTAAG | 1 cut(s) | 547 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 776, 1431 |
| BglII | AGATCT | 1 cut(s) | 613 |
| BlpI | GCTNAGC | 1 cut(s) | 1094 |
| Bme1390I | CCNGG | 2 cut(s) | 869, 1346 |
| Bme18I | GGWCC | 3 cut(s) | 372, 1420, 1939 |
| BmeT110I | CYCGRG | 1 cut(s) | 1703 |
| BmgBI | CACGTC | 2 cut(s) | 70, 1992 |
| BmgT120I | GGNCC | 5 cut(s) | 99, 372, 952, 1420, 1939 |
| BmiI | GGNNCC | 3 cut(s) | 537, 769, 1692 |
| BmrFI | CCNGG | 2 cut(s) | 869, 1346 |
| BmsI | GCATC | 5 cut(s) | 574, 1345, 1561, 1614, 1839 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1979, 2011 |
| BpmI | CTGGAG | 2 cut(s) | 968, 1878 |
| Bpu10I | CCTNAGC | 1 cut(s) | 588 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1094 |
| Bpu14I | TTCGAA | 1 cut(s) | 1468 |
| BpuEI | CTTGAG | 2 cut(s) | 1342, 1436 |
| BsaBI | GATNNNNATC | 1 cut(s) | 218 |
| BsaI | GGTCTC | 1 cut(s) | 35 |
| BsaJI | CCNNGG | 3 cut(s) | 771, 1457, 1537 |
| BsaWI | WCCGGW | 2 cut(s) | 538, 1923 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 216, 246, 1910, 1940 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1277, 1309, 1787 |
| Bse118I | RCCGGY | 1 cut(s) | 1923 |
| Bse1I | ACTGG | 2 cut(s) | 529, 1868 |
| Bse3DI | GCAATG | 1 cut(s) | 1476 |
| Bse8I | GATNNNNATC | 1 cut(s) | 218 |
| BseBI | CCWGG | 2 cut(s) | 869, 1346 |
| BseDI | CCNNGG | 3 cut(s) | 771, 1457, 1537 |
| BseGI | GGATG | 8 cut(s) | 37, 652, 895, 1187, 1336, 1576, 1941, 2024 |
| BseJI | GATNNNNATC | 1 cut(s) | 218 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1277, 1309, 1787 |
| BseMI | GCAATG | 1 cut(s) | 1476 |
| BseMII | CTCAG | 3 cut(s) | 579, 1187, 1977 |
| BseNI | ACTGG | 2 cut(s) | 529, 1868 |
| BseRI | GAGGAG | 4 cut(s) | 287, 665, 1007, 1931 |
| BseSI | GKGCMC | 1 cut(s) | 496 |
| BseXI | GCAGC | 9 cut(s) | 319, 341, 416, 492, 495, 674, 1099, 1422, 1966 |
| BsgI | GTGCAG | 1 cut(s) | 254 |
| BshFI | GGCC | 7 cut(s) | 101, 441, 779, 791, 954, 1640, 1867 |
| BshNI | GGYRCC | 1 cut(s) | 767 |
| BshTI | ACCGGT | 1 cut(s) | 1923 |
| BsiHKAI | GWGCWC | 2 cut(s) | 546, 1997 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1703 |
| BsiSI | CCGG | 3 cut(s) | 539, 1637, 1924 |
| BslFI | GGGAC | 3 cut(s) | 77, 944, 2025 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1277, 1309, 1787 |
| BsmAI | GTCTC | 4 cut(s) | 35, 1700, 1854, 1982 |
| BsmBI | CGTCTC | 1 cut(s) | 1982 |
| BsmFI | GGGAC | 3 cut(s) | 77, 944, 2025 |
| BsmI | GAATGC | 2 cut(s) | 2133, 2168 |
| BsnI | GGCC | 7 cut(s) | 101, 441, 779, 791, 954, 1640, 1867 |
| Bso31I | GGTCTC | 1 cut(s) | 35 |
| BsoBI | CYCGRG | 1 cut(s) | 1703 |
| Bsp119I | TTCGAA | 1 cut(s) | 1468 |
| Bsp1286I | GDGCHC | 3 cut(s) | 496, 546, 1997 |
| Bsp1407I | TGTACA | 1 cut(s) | 974 |
| Bsp143I | GATC | 7 cut(s) | 219, 613, 999, 1158, 1633, 1690, 1930 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1094 |
| Bsp19I | CCATGG | 3 cut(s) | 771, 1457, 1537 |
| BspACI | CCGC | 5 cut(s) | 56, 362, 1010, 1423, 1868 |
| BspANI | GGCC | 7 cut(s) | 101, 441, 779, 791, 954, 1640, 1867 |
| BspCNI | CTCAG | 3 cut(s) | 580, 1186, 1978 |
| BspLI | GGNNCC | 3 cut(s) | 537, 769, 1692 |
| BspMAI | CTGCAG | 1 cut(s) | 337 |
| BspPI | GGATC | 4 cut(s) | 1628, 1685, 1698, 1938 |
| BspQI | GCTCTTC | 1 cut(s) | 12 |
| BspT104I | TTCGAA | 1 cut(s) | 1468 |
| BspT107I | GGYRCC | 1 cut(s) | 767 |
| BspTI | CTTAAG | 1 cut(s) | 547 |
| BspTNI | GGTCTC | 1 cut(s) | 35 |
| BsrDI | GCAATG | 1 cut(s) | 1476 |
| BsrFI | RCCGGY | 1 cut(s) | 1923 |
| BsrGI | TGTACA | 1 cut(s) | 974 |
| BsrI | ACTGG | 2 cut(s) | 529, 1868 |
| BssAI | RCCGGY | 1 cut(s) | 1923 |
| BssECI | CCNNGG | 3 cut(s) | 771, 1457, 1537 |
| BssMI | GATC | 7 cut(s) | 219, 613, 999, 1158, 1633, 1690, 1930 |
| BssT1I | CCWWGG | 3 cut(s) | 771, 1457, 1537 |
| Bst2UI | CCWGG | 2 cut(s) | 869, 1346 |
| Bst4CI | ACNGT | 1 cut(s) | 979 |
| Bst6I | CTCTTC | 4 cut(s) | 12, 33, 1458, 2157 |
| BstAFI | CTTAAG | 1 cut(s) | 547 |
| BstAUI | TGTACA | 1 cut(s) | 974 |
| BstBI | TTCGAA | 1 cut(s) | 1468 |
| BstC8I | GCNNGC | 6 cut(s) | 237, 693, 855, 1117, 1432, 1878 |
| BstDEI | CTNAG | 8 cut(s) | 588, 816, 940, 1094, 1173, 1897, 1986, 2004 |
| BstDSI | CCRYGG | 3 cut(s) | 771, 1457, 1537 |
| BstEII | GGTNACC | 1 cut(s) | 2053 |
| BstF5I | GGATG | 8 cut(s) | 37, 652, 895, 1187, 1336, 1576, 1941, 2024 |
| BstHHI | GCGC | 1 cut(s) | 1814 |
| BstKTI | GATC | 7 cut(s) | 222, 616, 1002, 1161, 1636, 1693, 1933 |
| BstMAI | GTCTC | 4 cut(s) | 35, 1700, 1854, 1982 |
| BstMBI | GATC | 7 cut(s) | 219, 613, 999, 1158, 1633, 1690, 1930 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 776, 1431, 1873, 1898 |
| BstNI | CCWGG | 2 cut(s) | 869, 1346 |
| BstNSI | RCATGY | 3 cut(s) | 1249, 1253, 2065 |
| BstPI | GGTNACC | 1 cut(s) | 2053 |
| BstSCI | CCNGG | 2 cut(s) | 867, 1344 |
| BstSFI | CTRYAG | 1 cut(s) | 333 |
| BstSLI | GKGCMC | 1 cut(s) | 496 |
| BstV1I | GCAGC | 9 cut(s) | 319, 341, 416, 492, 495, 674, 1099, 1422, 1966 |
| BstX2I | RGATCY | 3 cut(s) | 613, 1633, 1690 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1199 |
| BstYI | RGATCY | 3 cut(s) | 613, 1633, 1690 |
| BsuRI | GGCC | 7 cut(s) | 101, 441, 779, 791, 954, 1640, 1867 |
| BtgI | CCRYGG | 3 cut(s) | 771, 1457, 1537 |
| BtgZI | GCGATG | 1 cut(s) | 177 |
| BtrI | CACGTC | 2 cut(s) | 70, 1992 |
| BtsCI | GGATG | 8 cut(s) | 37, 652, 895, 1187, 1336, 1576, 1941, 2024 |
| BtsI | GCAGTG | 1 cut(s) | 1908 |
| BtsIMutI | CAGTG | 3 cut(s) | 1352, 1840, 1908 |
| Cac8I | GCNNGC | 6 cut(s) | 237, 693, 855, 1117, 1432, 1878 |
| CfoI | GCGC | 1 cut(s) | 1814 |
| Cfr10I | RCCGGY | 1 cut(s) | 1923 |
| Cfr13I | GGNCC | 5 cut(s) | 99, 372, 952, 1420, 1939 |
| CseI | GACGC | 1 cut(s) | 97 |
| CsiI | ACCWGGT | 1 cut(s) | 1344 |
| Csp6I | GTAC | 3 cut(s) | 248, 552, 975 |
| CspAI | ACCGGT | 1 cut(s) | 1923 |
| CviQI | GTAC | 3 cut(s) | 248, 552, 975 |
| DdeI | CTNAG | 8 cut(s) | 588, 816, 940, 1094, 1173, 1897, 1986, 2004 |
| DpnI | GATC | 7 cut(s) | 221, 615, 1001, 1160, 1635, 1692, 1932 |
| DpnII | GATC | 7 cut(s) | 219, 613, 999, 1158, 1633, 1690, 1930 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1946 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1946 |
| EaeI | YGGCCR | 3 cut(s) | 439, 1638, 1865 |
| Eam1104I | CTCTTC | 4 cut(s) | 12, 33, 1458, 2157 |
| EarI | CTCTTC | 4 cut(s) | 12, 33, 1458, 2157 |
| EciI | GGCGGA | 1 cut(s) | 377 |
| Eco130I | CCWWGG | 3 cut(s) | 771, 1457, 1537 |
| Eco31I | GGTCTC | 1 cut(s) | 35 |
| Eco47I | GGWCC | 3 cut(s) | 372, 1420, 1939 |
| Eco57I | CTGAAG | 1 cut(s) | 2033 |
| Eco88I | CYCGRG | 1 cut(s) | 1703 |
| Eco91I | GGTNACC | 1 cut(s) | 2053 |
| EcoO65I | GGTNACC | 1 cut(s) | 2053 |
| EcoRI | GAATTC | 1 cut(s) | 1133 |
| EcoRII | CCWGG | 2 cut(s) | 867, 1344 |
| EcoT14I | CCWWGG | 3 cut(s) | 771, 1457, 1537 |
| EcoT22I | ATGCAT | 1 cut(s) | 1251 |
| ErhI | CCWWGG | 3 cut(s) | 771, 1457, 1537 |
| Esp3I | CGTCTC | 1 cut(s) | 1982 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 837, 869, 1221, 1253 |
| FaqI | GGGAC | 3 cut(s) | 77, 944, 2025 |
| FauNDI | CATATG | 1 cut(s) | 1975 |
| FokI | GGATG | 8 cut(s) | 44, 659, 902, 1174, 1323, 1583, 1948, 2011 |
| FspAI | RTGCGCAY | 1 cut(s) | 1813 |
| FspBI | CTAG | 7 cut(s) | 408, 581, 621, 959, 1377, 1817, 1871 |
| FspI | TGCGCA | 1 cut(s) | 1813 |
| GlaI | GCGC | 1 cut(s) | 1813 |
| GsuI | CTGGAG | 2 cut(s) | 968, 1878 |
| HaeIII | GGCC | 7 cut(s) | 101, 441, 779, 791, 954, 1640, 1867 |
| HapII | CCGG | 3 cut(s) | 539, 1637, 1924 |
| HgaI | GACGC | 1 cut(s) | 97 |
| HhaI | GCGC | 1 cut(s) | 1814 |
| Hin6I | GCGC | 1 cut(s) | 1812 |
| HinP1I | GCGC | 1 cut(s) | 1812 |
| HincII | GTYRAC | 1 cut(s) | 630 |
| HindII | GTYRAC | 1 cut(s) | 630 |
| HindIII | AAGCTT | 4 cut(s) | 805, 1117, 1715, 2009 |
| HinfI | GANTC | 7 cut(s) | 214, 557, 965, 1234, 1373, 1543, 1727 |
| HpaII | CCGG | 3 cut(s) | 539, 1637, 1924 |
| HphI | GGTGA | 4 cut(s) | 137, 1024, 1607, 1639 |
| Hpy166II | GTNNAC | 5 cut(s) | 145, 630, 1738, 2087, 2178 |
| Hpy188III | TCNNGA | 9 cut(s) | 106, 581, 919, 1021, 1321, 1370, 1694, 1703, 1705 |
| Hpy8I | GTNNAC | 5 cut(s) | 145, 630, 1738, 2087, 2178 |
| Hpy99I | CGWCG | 3 cut(s) | 71, 91, 119 |
| HpyAV | CCTTC | 4 cut(s) | 146, 162, 880, 1199 |
| HpyCH4III | ACNGT | 1 cut(s) | 979 |
| HpyCH4IV | ACGT | 6 cut(s) | 69, 141, 895, 1472, 1848, 1991 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 776, 1431, 1873, 1898 |
| HpyF3I | CTNAG | 8 cut(s) | 588, 816, 940, 1094, 1173, 1897, 1986, 2004 |
| HpySE526I | ACGT | 6 cut(s) | 69, 141, 895, 1472, 1848, 1991 |
| HspAI | GCGC | 1 cut(s) | 1812 |
| Kzo9I | GATC | 7 cut(s) | 219, 613, 999, 1158, 1633, 1690, 1930 |
| LguI | GCTCTTC | 1 cut(s) | 12 |
| LmnI | GCTCC | 4 cut(s) | 6, 224, 541, 1450 |
| Lsp1109I | GCAGC | 9 cut(s) | 319, 341, 416, 492, 495, 674, 1099, 1422, 1966 |
| LweI | GCATC | 5 cut(s) | 574, 1345, 1561, 1614, 1839 |
| MabI | ACCWGGT | 1 cut(s) | 1344 |
| MaeI | CTAG | 7 cut(s) | 408, 581, 621, 959, 1377, 1817, 1871 |
| MaeII | ACGT | 6 cut(s) | 69, 141, 895, 1472, 1848, 1991 |
| MaeIII | GTNAC | 6 cut(s) | 685, 966, 1348, 1380, 1556, 2053 |
| MalI | GATC | 7 cut(s) | 221, 615, 1001, 1160, 1635, 1692, 1932 |
| MboI | GATC | 7 cut(s) | 219, 613, 999, 1158, 1633, 1690, 1930 |
| MflI | RGATCY | 3 cut(s) | 613, 1633, 1690 |
| MhlI | GDGCHC | 3 cut(s) | 496, 546, 1997 |
| MlsI | TGGCCA | 1 cut(s) | 441 |
| MluNI | TGGCCA | 1 cut(s) | 441 |
| MlyI | GAGTC | 1 cut(s) | 974 |
| MmeI | TCCRAC | 3 cut(s) | 822, 1824, 1908 |
| Mox20I | TGGCCA | 1 cut(s) | 441 |
| Mph1103I | ATGCAT | 1 cut(s) | 1251 |
| MroXI | GAANNNNTTC | 1 cut(s) | 561 |
| MscI | TGGCCA | 1 cut(s) | 441 |
| MseI | TTAA | 5 cut(s) | 548, 1401, 1616, 1769, 2109 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1248 |
| Msp20I | TGGCCA | 1 cut(s) | 441 |
| MspA1I | CMGCKG | 3 cut(s) | 332, 665, 1856 |
| MspCI | CTTAAG | 1 cut(s) | 547 |
| MspI | CCGG | 3 cut(s) | 539, 1637, 1924 |
| MspR9I | CCNGG | 2 cut(s) | 869, 1346 |
| Mva1269I | GAATGC | 2 cut(s) | 2133, 2168 |
| MvaI | CCWGG | 2 cut(s) | 869, 1346 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 776, 1431, 1873, 1898 |
| NcoI | CCATGG | 3 cut(s) | 771, 1457, 1537 |
| NdeI | CATATG | 1 cut(s) | 1975 |
| NdeII | GATC | 7 cut(s) | 219, 613, 999, 1158, 1633, 1690, 1930 |
| NlaIV | GGNNCC | 3 cut(s) | 537, 769, 1692 |
| NmeAIII | GCCGAG | 1 cut(s) | 277 |
| NmuCI | GTSAC | 2 cut(s) | 966, 1380 |
| NsbI | TGCGCA | 1 cut(s) | 1813 |
| NsiI | ATGCAT | 1 cut(s) | 1251 |
| NspI | RCATGY | 3 cut(s) | 1249, 1253, 2065 |
| NspV | TTCGAA | 1 cut(s) | 1468 |
| PaeR7I | CTCGAG | 1 cut(s) | 1703 |
| PciI | ACATGT | 1 cut(s) | 2061 |
| PciSI | GCTCTTC | 1 cut(s) | 12 |
| PctI | GAATGC | 2 cut(s) | 2133, 2168 |
| PdmI | GAANNNNTTC | 1 cut(s) | 561 |
| PfeI | GAWTC | 6 cut(s) | 214, 557, 1234, 1373, 1543, 1727 |
| PinAI | ACCGGT | 1 cut(s) | 1923 |
| PleI | GAGTC | 1 cut(s) | 973 |
| PpsI | GAGTC | 1 cut(s) | 973 |
| PscI | ACATGT | 1 cut(s) | 2061 |
| PsiI | TTATAA | 1 cut(s) | 1227 |
| Psp6I | CCWGG | 2 cut(s) | 867, 1344 |
| PspEI | GGTNACC | 1 cut(s) | 2053 |
| PspGI | CCWGG | 2 cut(s) | 867, 1344 |
| PspN4I | GGNNCC | 3 cut(s) | 537, 769, 1692 |
| PspPI | GGNCC | 5 cut(s) | 99, 372, 952, 1420, 1939 |
| PstI | CTGCAG | 1 cut(s) | 337 |
| PsuI | RGATCY | 3 cut(s) | 613, 1633, 1690 |
| PvuII | CAGCTG | 3 cut(s) | 332, 665, 1856 |
| RsaI | GTAC | 3 cut(s) | 249, 553, 976 |
| RsaNI | GTAC | 3 cut(s) | 248, 552, 975 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1248 |
| SapI | GCTCTTC | 1 cut(s) | 12 |
| SaqAI | TTAA | 5 cut(s) | 548, 1401, 1616, 1769, 2109 |
| Sau3AI | GATC | 7 cut(s) | 219, 613, 999, 1158, 1633, 1690, 1930 |
| Sau96I | GGNCC | 5 cut(s) | 99, 372, 952, 1420, 1939 |
| SchI | GAGTC | 1 cut(s) | 974 |
| ScrFI | CCNGG | 2 cut(s) | 869, 1346 |
| SduI | GDGCHC | 3 cut(s) | 496, 546, 1997 |
| SexAI | ACCWGGT | 1 cut(s) | 1344 |
| SfaNI | GCATC | 5 cut(s) | 574, 1345, 1561, 1614, 1839 |
| SfcI | CTRYAG | 1 cut(s) | 333 |
| Sfr274I | CTCGAG | 1 cut(s) | 1703 |
| SfuI | TTCGAA | 1 cut(s) | 1468 |
| SinI | GGWCC | 3 cut(s) | 372, 1420, 1939 |
| SlaI | CTCGAG | 1 cut(s) | 1703 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1248 |
| SmlI | CTYRAG | 4 cut(s) | 547, 1321, 1415, 1703 |
| SmoI | CTYRAG | 4 cut(s) | 547, 1321, 1415, 1703 |
| SsiI | CCGC | 5 cut(s) | 56, 362, 1010, 1423, 1868 |
| SspI | AATATT | 1 cut(s) | 344 |
| SspMI | CTAG | 7 cut(s) | 408, 581, 621, 959, 1377, 1817, 1871 |
| StyD4I | CCNGG | 2 cut(s) | 867, 1344 |
| StyI | CCWWGG | 3 cut(s) | 771, 1457, 1537 |
| TaaI | ACNGT | 1 cut(s) | 979 |
| TaiI | ACGT | 6 cut(s) | 72, 144, 898, 1475, 1851, 1994 |
| TaqI | TCGA | 4 cut(s) | 1468, 1517, 1704, 1997 |
| TatI | WGTACW | 2 cut(s) | 551, 974 |
| TauI | GCSGC | 1 cut(s) | 1870 |
| TfiI | GAWTC | 6 cut(s) | 214, 557, 1234, 1373, 1543, 1727 |
| Tru1I | TTAA | 5 cut(s) | 548, 1401, 1616, 1769, 2109 |
| Tru9I | TTAA | 5 cut(s) | 548, 1401, 1616, 1769, 2109 |
| TscAI | CASTG | 3 cut(s) | 1359, 1840, 1908 |
| TseFI | GTSAC | 2 cut(s) | 966, 1380 |
| TseI | GCWGC | 9 cut(s) | 329, 332, 404, 505, 508, 662, 1112, 1410, 1979 |
| Tsp45I | GTSAC | 2 cut(s) | 966, 1380 |
| TspGWI | ACGGA | 1 cut(s) | 265 |
| TspRI | CASTG | 3 cut(s) | 1359, 1840, 1908 |
| Vha464I | CTTAAG | 1 cut(s) | 547 |
| VpaK11BI | GGWCC | 3 cut(s) | 372, 1420, 1939 |
| XapI | RAATTY | 6 cut(s) | 181, 514, 728, 1133, 1177, 1464 |
| XbaI | TCTAGA | 1 cut(s) | 580 |
| XceI | RCATGY | 3 cut(s) | 1249, 1253, 2065 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1455 |
| XhoI | CTCGAG | 1 cut(s) | 1703 |
| XmnI | GAANNNNTTC | 1 cut(s) | 561 |
| XspI | CTAG | 7 cut(s) | 408, 581, 621, 959, 1377, 1817, 1871 |
| Zsp2I | ATGCAT | 1 cut(s) | 1251 |