AT3G49400

Transcription factor IIIC subunit delta N-term

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009196
Physical Location & Seq
Reverse (-)
18319060 .. 18324624
5565 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49400.3

Sequence Viewer

Length: 2679 bp
ATGGCGTCGCGGTTTCAGGAAGCTTCACTGGTTACTTCACCGTCGTATCCTAACGCCGTCGCTTGGTCATCGGAAAATCTCATCGCCGTCGCTGCTGGTCATCTAGTCATCATCATTAATCCGGCTTTGCCTACTGGCCCTCGTGGATTGATCACAATCTCTGACGCCGAGCTTTATCAGATTGGTCGTGTTCGCTCTCAAGATTTGCTAACTGGTGGACTCTTGCCTTCGAGTTTGAAGCGGGAAAGAAGTCCATGTGTTCGATCTCTCTCATGGTCTGAGATAGGAATGTCTCCAAACCACGGGTGCTTACTGGCTGTTTGCACAGCGGAAGGAAGGGTTAAGCTATACCGACCTCCATATTCTGATTTCTGTGCTGAGTGGATTGAGATTGTTGATATATCTAAAATGCTTTATGAGAATCTATCAAGCATGAACTTTGGAGAGTCCAAAAATCCTTCTACTTCATTATCTAAGGATCAAGTGGTAGAACATGACCATGAGGAGGATGAAAGGATTTCAAGTCTGAAGGCACGCAAGCGAAGAAAAACAAGTGCAAATAACATCAACTTGCATGAAAAGAATTATACAGATCGAGCATCATGTTCCAAGCAAGACAGTAAAGCAGAGCATAATGTACTTGAGATTGAAGTATATAAACAGGCAAGCAATGGCCAAGATCGTCGTTCCTTGCCTAAAGCTCTAAAAAAATGCAGTCAAGAGATAAGTCCGCAAACGTATGTGTCTCGTGAGGCATTATTATCCTCCCATTCCGTTGCCTGGTCATCTCTTCTAAGATTCTCATCAGAAAGTTCTTGTGGGAATATGTTAAGATTCTCTCTTTTGGCAATTGGTTCAAAGTCCGGGAGCGTTTCCATATGGAAAGTTCATGCACCTGAATGCTATCACATTGAACGCAGCAATGTATCTCCCATGGTGGAACTTACTGCTATAGTTCAGACCCATAGCTCATGGGTTTCAACAATGAGTTGGGGAATTTTTGGCTGTGATTCTTCGAATCCGCAAGTGGTGTTGGTTACTGGGAGTTGTGATGGTAGTGTGAAAATTTGGATGAGCAACAAAGAAGACTTGCAAAATTCTGTGGAGGTCTATAAATCTTCATTCTTTCTACTAAAAGAGGTTGTAGCAGTGAATCCTGTTCAGGTTTCAACGCTTTCTTTTGTTGTAAGCAACCATTATAATGCAATGCACTTGGCAATCGGTAAAGGATCTGGTTCTTTCGAAGTATGGAAGTGTGAAATATCTACAAGAAAGTTTGAACAAATTGTTTCAACTAATGCTCATAACCAAGTGGTTACAGGTCTAGCTTGGTCATATGATGGCCGTTGTTTGTACAGTTGCAGTCAGGATAATTATGTCCGGAGCTGGATTTTATGTGAGAATGCCATCTCTGAAGTGCCAATTCCTGCAAACACTCCTGGTCTCAGTAGCACGACTGATCTTCCTGATGATTTTCTATCATGCCTTGGTGTGGCATTGTCACCTGGAAACCTTGCTGTTGCTTTGGTCCGCAACTTTAACGTTGAACTCTTGAATCCAATGTACCAAGCCAGGTCGCAGAAGGCTGCTGTAGAATTCCTCTGGAATGGTGCACAACAATCTGGTGAGTCAGAAGATTCTACAGAGACGGTAACCGAAGCTATTCTGGGTTTCTCAAAGAATGAATTCGCAAATTGGGAATCCAATATTCTCTGGTCGTTAAAAGAATTCAACTATTTGAATAAGCCTCTAGTTCTTTGGGATATGGTAGCTGCAATGCTGGCGTTCAAACAATCAATGCCAGAGTTTGTTGAATTAGTATTAACTAAATGGCTCTCTGTGTCATACCTTGGATTTCATGATGATATCTCCATGGAAGATCTCGTGCCAAAGATCACCAAACGCTTCTCTGATGTTCCTTCCAGGCTGTTACACATTCTCAACGTAATCTCTAGACGTGTAATGTTATCGGAACTCAAAACAGAAGAAATCAACAGAAAACTGCAAGGTCAGAGAACGAACGATGAAGGAGAAATTGATCTGTGGCTCAAACTGCTTCAAGAAAGTGAACGAGAACTCCGAGAAAGACTGGTTGGTCTCAGTTTCTCGGCTTATTTACTCGCTGAGTCATCTCAGGGTACTATTTCGCCTCCCTCTTGGAATTGGCGTCCAGCTGGATTGGCTCTGTTGCAACAATGGGTTGAGATAAATCGTGATATTGTCCATAGTCAGCTGGAAACACTTTCCTTAGAAGTAAAATCTAGTCGAACGAGATCAAGTAATAGCACAGAAACTGCATTAGAGGAAGAGAAATGTCCTTATTGTGCAGCGCCAGTAAATTTCCACTCAGCAGAGGAAGCCTTTTGCGAATCTTCGCACCAAAAAAAAAAGAAGAGCAAAGACAAAGAGAGATGTGATGAAAGCCACAAGCTTGAGAGGTGTTGTGTCTCAATGCAAGTATGTCCACCAACTCCTTTATGGTTCTGCAAATGCTGCAACCGAATGACTTTAGAACTCGCTCCAGAGACCTTATTTGCATTGCCTTCGTTCCCGAGTGATCTCAAATCACTTCCAAAATCTTCCTTTAGCAAAGTTGCCTCGAAACCGTTCTGCCTCTTCTGTGGAGTTCTCTTGCAGAGAAAGCAGCCTGAGTTTCTGCTCTCAGCCTCACCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TFIIIC_delta WD40 zf-TFIIIC

Protein Analysis

892

Amino Acids

99.72

Weight (kDa)

6.23

Isoelectric Point (pI)

59.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_2nd PF25172 201 - 330 9.7e-07 WDR3 second beta-propeller domain
Beta-prop_EML_2 PF23414 207 - 325 4.3e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 260 - 328 3.5e-06 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 263 - 330 2.4e-06 CDC20/Fizzy WD40 domain
WD40 PF00400 293 - 327 5.6e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1200
AasI GACNNNNNNGTC 1 cut(s) 2094
AccII CGCG 1 cut(s) 10
AccIII TCCGGA 1 cut(s) 1380
AciI CCGC 6 cut(s) 10, 241, 329, 731, 1022, 1531
AclI AACGTT 1 cut(s) 1542
AclWI GGATC 2 cut(s) 486, 1237
AcoI YGGCCR 2 cut(s) 673, 1342
AcsI RAATTY 7 cut(s) 996, 1065, 1096, 1595, 1685, 1727, 2338
AcuI CTGAAG 2 cut(s) 548, 1434
AcyI GRCGYC 3 cut(s) 5, 165, 2167
AfaI GTAC 4 cut(s) 639, 1355, 1565, 2140
AfiI CCNNNNNNNGG 5 cut(s) 63, 302, 505, 780, 1492
AflIII ACRYGT 1 cut(s) 1957
AjiI CACGTC 1 cut(s) 1958
AjnI CCWGG 5 cut(s) 779, 1438, 1504, 1571, 1922
AjuI GAANNNNNNNTTGG 2 cut(s) 2076, 2108
AleI CACNNNNGTG 1 cut(s) 2674
AloI GAACNNNNNNTCC 2 cut(s) 2061, 2093
Alw21I GWGCWC 1 cut(s) 1615
Alw26I GTCTC 7 cut(s) 297, 750, 1448, 1640, 2102, 2452, 2519
Alw44I GTGCAC 1 cut(s) 1611
AlwI GGATC 2 cut(s) 486, 1237
AlwNI CAGNNNCTG 1 cut(s) 2294
Ama87I CYCGRG 1 cut(s) 2551
Aor13HI TCCGGA 1 cut(s) 1380
AoxI GGCC 3 cut(s) 136, 673, 1342
ApaLI GTGCAC 1 cut(s) 1611
ApeKI GCWGC 7 cut(s) 92, 918, 1586, 1772, 2327, 2493, 2644
ApoI RAATTY 7 cut(s) 996, 1065, 1096, 1595, 1685, 1727, 2338
AseI ATTAAT 1 cut(s) 117
Asp700I GAANNNNTTC 3 cut(s) 1662, 1685, 2606
AspLEI GCGC 1 cut(s) 2332
AspS9I GGNCC 2 cut(s) 137, 1528
AsuC2I CCSGG 1 cut(s) 865
AsuHPI GGTGA 5 cut(s) 30, 1494, 1637, 1888, 2661
AsuII TTCGAA 2 cut(s) 1016, 1242
AvaI CYCGRG 1 cut(s) 2551
AvaII GGWCC 1 cut(s) 1528
BaeGI GKGCMC 1 cut(s) 1615
BaeI ACNNNNGTAYC 2 cut(s) 29, 62
BalI TGGCCA 1 cut(s) 675
BauI CACGAG 3 cut(s) 141, 747, 1883
BbsI GAAGAC 1 cut(s) 1092
Bbv12I GWGCWC 1 cut(s) 1615
BbvI GCAGC 7 cut(s) 79, 930, 1573, 1759, 2339, 2480, 2656
BccI CCATC 3 cut(s) 1046, 1334, 1415
BceAI ACGGC 3 cut(s) 41, 71, 1329
BcgI CGANNNNNNTGC 2 cut(s) 2526, 2560
BciT130I CCWGG 5 cut(s) 781, 1440, 1506, 1573, 1924
BciVI GTATCC 1 cut(s) 57
BclI TGATCA 1 cut(s) 150
BcnI CCSGG 1 cut(s) 865
BcoDI GTCTC 7 cut(s) 297, 750, 1448, 1640, 2102, 2452, 2519
BfaI CTAG 5 cut(s) 104, 1325, 1751, 1953, 2262
BfmI CTRYAG 3 cut(s) 951, 1590, 1641
BfoI RGCGCY 1 cut(s) 2333
BfuI GTATCC 1 cut(s) 57
BglII AGATCT 1 cut(s) 1879
BisI GCNGC 7 cut(s) 93, 919, 1587, 1773, 2328, 2494, 2645
BlsI GCNGC 7 cut(s) 94, 920, 1588, 1774, 2329, 2495, 2646
Bme1390I CCNGG 6 cut(s) 781, 865, 1440, 1506, 1573, 1924
Bme18I GGWCC 1 cut(s) 1528
BmeT110I CYCGRG 1 cut(s) 2551
BmgBI CACGTC 1 cut(s) 1958
BmgT120I GGNCC 2 cut(s) 137, 1528
BmrFI CCNGG 6 cut(s) 781, 865, 1440, 1506, 1573, 1924
BmrI ACTGGG 1 cut(s) 1050
BmsI GCATC 1 cut(s) 608
BmuI ACTGGG 1 cut(s) 1050
BpiI GAAGAC 1 cut(s) 1092
BpmI CTGGAG 1 cut(s) 2505
Bpu14I TTCGAA 2 cut(s) 1016, 1242
BpuEI CTTGAG 3 cut(s) 183, 662, 2453
BpuMI CCSGG 1 cut(s) 865
BsaBI GATNNNNATC 2 cut(s) 155, 802
BsaHI GRCGYC 3 cut(s) 5, 165, 2167
BsaI GGTCTC 3 cut(s) 1448, 2102, 2519
BsaJI CCNNGG 5 cut(s) 301, 933, 1486, 1849, 1872
BsaWI WCCGGW 1 cut(s) 1380
BsaXI ACNNNNNCTCC 2 cut(s) 2061, 2091
Bsc4I CCNNNNNNNGG 5 cut(s) 63, 302, 505, 780, 1492
Bse1I ACTGG 7 cut(s) 33, 139, 217, 318, 1045, 2094, 2333
Bse3DI GCAATG 5 cut(s) 676, 928, 1212, 1782, 2537
Bse8I GATNNNNATC 2 cut(s) 155, 802
BseAI TCCGGA 1 cut(s) 1380
BseBI CCWGG 5 cut(s) 781, 1440, 1506, 1573, 1924
BseDI CCNNGG 5 cut(s) 301, 933, 1486, 1849, 1872
BseGI GGATG 2 cut(s) 514, 1077
BseJI GATNNNNATC 2 cut(s) 155, 802
BseLI CCNNNNNNNGG 5 cut(s) 63, 302, 505, 780, 1492
BseMI GCAATG 5 cut(s) 676, 928, 1212, 1782, 2537
BseMII CTCAG 9 cut(s) 270, 369, 1459, 2113, 2115, 2147, 2361, 2640, 2676
BseNI ACTGG 7 cut(s) 33, 139, 217, 318, 1045, 2094, 2333
BseRI GAGGAG 1 cut(s) 518
BseSI GKGCMC 1 cut(s) 1615
BseXI GCAGC 7 cut(s) 79, 930, 1573, 1759, 2339, 2480, 2656
BsgI GTGCAG 1 cut(s) 2346
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 3 cut(s) 138, 675, 1344
BsiHKAI GWGCWC 1 cut(s) 1615
BsiHKCI CYCGRG 1 cut(s) 2551
BsiSI CCGG 3 cut(s) 122, 864, 1381
BslI CCNNNNNNNGG 5 cut(s) 63, 302, 505, 780, 1492
BsmAI GTCTC 7 cut(s) 297, 750, 1448, 1640, 2102, 2452, 2519
BsmBI CGTCTC 1 cut(s) 1640
BsmI GAATGC 2 cut(s) 905, 1408
BsnI GGCC 3 cut(s) 138, 675, 1344
Bso31I GGTCTC 3 cut(s) 1448, 2102, 2519
BsoBI CYCGRG 1 cut(s) 2551
Bsp119I TTCGAA 2 cut(s) 1016, 1242
Bsp1286I GDGCHC 1 cut(s) 1615
Bsp13I TCCGGA 1 cut(s) 1380
Bsp1407I TGTACA 1 cut(s) 1353
Bsp19I CCATGG 2 cut(s) 933, 1872
BspACI CCGC 6 cut(s) 10, 241, 329, 731, 1022, 1531
BspANI GGCC 3 cut(s) 138, 675, 1344
BspCNI CTCAG 9 cut(s) 271, 370, 1458, 2112, 2116, 2146, 2360, 2641, 2675
BspEI TCCGGA 1 cut(s) 1380
BspFNI CGCG 1 cut(s) 10
BspHI TCATGA 1 cut(s) 1858
BspPI GGATC 2 cut(s) 486, 1237
BspQI GCTCTTC 1 cut(s) 2387
BspT104I TTCGAA 2 cut(s) 1016, 1242
BspTNI GGTCTC 3 cut(s) 1448, 2102, 2519
BsrDI GCAATG 5 cut(s) 676, 928, 1212, 1782, 2537
BsrGI TGTACA 1 cut(s) 1353
BsrI ACTGG 7 cut(s) 33, 139, 217, 318, 1045, 2094, 2333
BssECI CCNNGG 5 cut(s) 301, 933, 1486, 1849, 1872
BssNI GRCGYC 3 cut(s) 5, 165, 2167
BssSI CACGAG 3 cut(s) 141, 747, 1883
BssT1I CCWWGG 4 cut(s) 933, 1486, 1849, 1872
Bst2BI CACGAG 3 cut(s) 141, 747, 1883
Bst2UI CCWGG 5 cut(s) 781, 1440, 1506, 1573, 1924
Bst4CI ACNGT 5 cut(s) 42, 620, 1358, 1651, 2607
Bst6I CTCTTC 4 cut(s) 795, 2301, 2387, 2621
BstACI GRCGYC 3 cut(s) 5, 165, 2167
BstAPI GCANNNNNTGC 1 cut(s) 2493
BstAUI TGTACA 1 cut(s) 1353
BstBI TTCGAA 2 cut(s) 1016, 1242
BstC8I GCNNGC 4 cut(s) 535, 539, 667, 1782
BstDSI CCRYGG 3 cut(s) 301, 933, 1872
BstEII GGTNACC 1 cut(s) 1651
BstF5I GGATG 2 cut(s) 514, 1077
BstFNI CGCG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 2333
BstHHI GCGC 1 cut(s) 2332
BstMAI GTCTC 7 cut(s) 297, 750, 1448, 1640, 2102, 2452, 2519
BstMWI GCNNNNNNNGC 7 cut(s) 92, 1781, 2053, 2180, 2357, 2493, 2641
BstNI CCWGG 5 cut(s) 781, 1440, 1506, 1573, 1924
BstPI GGTNACC 1 cut(s) 1651
BstSCI CCNGG 6 cut(s) 779, 863, 1438, 1504, 1571, 1922
BstSFI CTRYAG 3 cut(s) 951, 1590, 1641
BstSLI GKGCMC 1 cut(s) 1615
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 7 cut(s) 79, 930, 1573, 1759, 2339, 2480, 2656
BstV2I GAAGAC 1 cut(s) 1092
BstX2I RGATCY 2 cut(s) 1229, 1879
BstYI RGATCY 2 cut(s) 1229, 1879
BsuI GTATCC 1 cut(s) 57
BsuRI GGCC 3 cut(s) 138, 675, 1344
BtgI CCRYGG 3 cut(s) 301, 933, 1872
BtgZI GCGATG 1 cut(s) 67
BtrI CACGTC 1 cut(s) 1958
BtsCI GGATG 2 cut(s) 514, 1077
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 2 cut(s) 26, 1155
Cac8I GCNNGC 4 cut(s) 535, 539, 667, 1782
CaiI CAGNNNCTG 1 cut(s) 2294
CciI TCATGA 1 cut(s) 1858
CfoI GCGC 1 cut(s) 2332
Cfr13I GGNCC 2 cut(s) 137, 1528
CseI GACGC 2 cut(s) 173, 2156
Csp6I GTAC 4 cut(s) 638, 1354, 1564, 2139
CviQI GTAC 4 cut(s) 638, 1354, 1564, 2139
DrdI GACNNNNNNGTC 1 cut(s) 2094
DseDI GACNNNNNNGTC 1 cut(s) 2094
EaeI YGGCCR 2 cut(s) 673, 1342
Eam1104I CTCTTC 4 cut(s) 795, 2301, 2387, 2621
EarI CTCTTC 4 cut(s) 795, 2301, 2387, 2621
Eco130I CCWWGG 4 cut(s) 933, 1486, 1849, 1872
Eco31I GGTCTC 3 cut(s) 1448, 2102, 2519
Eco32I GATATC 1 cut(s) 1867
Eco47I GGWCC 1 cut(s) 1528
Eco57I CTGAAG 2 cut(s) 548, 1434
Eco88I CYCGRG 1 cut(s) 2551
Eco91I GGTNACC 1 cut(s) 1651
EcoO65I GGTNACC 1 cut(s) 1651
EcoRI GAATTC 3 cut(s) 1595, 1685, 1727
EcoRII CCWGG 5 cut(s) 779, 1438, 1504, 1571, 1922
EcoRV GATATC 1 cut(s) 1867
EcoT14I CCWWGG 4 cut(s) 933, 1486, 1849, 1872
ErhI CCWWGG 4 cut(s) 933, 1486, 1849, 1872
Esp3I CGTCTC 1 cut(s) 1640
FauI CCCGC 1 cut(s) 234
FauNDI CATATG 2 cut(s) 878, 1336
FbaI TGATCA 1 cut(s) 150
Fnu4HI GCNGC 7 cut(s) 93, 919, 1587, 1773, 2328, 2494, 2645
FokI GGATG 2 cut(s) 521, 1084
Fsp4HI GCNGC 7 cut(s) 93, 919, 1587, 1773, 2328, 2494, 2645
FspBI CTAG 5 cut(s) 104, 1325, 1751, 1953, 2262
GlaI GCGC 1 cut(s) 2331
GluI GCNGC 7 cut(s) 93, 919, 1587, 1773, 2328, 2494, 2645
GsuI CTGGAG 1 cut(s) 2505
HaeII RGCGCY 1 cut(s) 2333
HaeIII GGCC 3 cut(s) 138, 675, 1344
HapII CCGG 3 cut(s) 122, 864, 1381
HgaI GACGC 2 cut(s) 173, 2156
HhaI GCGC 1 cut(s) 2332
Hin1I GRCGYC 3 cut(s) 5, 165, 2167
Hin6I GCGC 1 cut(s) 2330
HinP1I GCGC 1 cut(s) 2330
HindIII AAGCTT 2 cut(s) 21, 2429
HpaII CCGG 3 cut(s) 122, 864, 1381
HphI GGTGA 5 cut(s) 30, 1494, 1637, 1888, 2661
Hpy166II GTNNAC 4 cut(s) 218, 1613, 2069, 2465
Hpy8I GTNNAC 4 cut(s) 218, 1613, 2069, 2465
Hpy99I CGWCG 5 cut(s) 10, 46, 62, 92, 687
HpyAV CCTTC 9 cut(s) 237, 326, 330, 468, 523, 1576, 1929, 2021, 2553
HpyCH4III ACNGT 5 cut(s) 42, 620, 1358, 1651, 2607
HpyCH4IV ACGT 4 cut(s) 737, 1542, 1944, 1957
HpyF10VI GCNNNNNNNGC 7 cut(s) 92, 1781, 2053, 2180, 2357, 2493, 2641
HpySE526I ACGT 4 cut(s) 737, 1542, 1944, 1957
Hsp92I GRCGYC 3 cut(s) 5, 165, 2167
HspAI GCGC 1 cut(s) 2330
Kpn2I TCCGGA 1 cut(s) 1380
Ksp22I TGATCA 1 cut(s) 150
LguI GCTCTTC 1 cut(s) 2387
LmnI GCTCC 3 cut(s) 867, 1383, 2524
Lsp1109I GCAGC 7 cut(s) 79, 930, 1573, 1759, 2339, 2480, 2656
LweI GCATC 1 cut(s) 608
MaeI CTAG 5 cut(s) 104, 1325, 1751, 1953, 2262
MaeII ACGT 4 cut(s) 737, 1542, 1944, 1957
MaeIII GTNAC 6 cut(s) 31, 1036, 1315, 1500, 1651, 1929
MfeI CAATTG 1 cut(s) 849
MflI RGATCY 2 cut(s) 1229, 1879
MhlI GDGCHC 1 cut(s) 1615
MlsI TGGCCA 1 cut(s) 675
MluNI TGGCCA 1 cut(s) 675
MlyI GAGTC 4 cut(s) 213, 455, 1637, 2135
Mox20I TGGCCA 1 cut(s) 675
MroI TCCGGA 1 cut(s) 1380
MroXI GAANNNNTTC 3 cut(s) 1662, 1685, 2606
MscI TGGCCA 1 cut(s) 675
MseI TTAA 6 cut(s) 117, 342, 830, 1539, 1721, 1823
MslI CAYNNNNRTG 4 cut(s) 498, 898, 1200, 2674
Msp20I TGGCCA 1 cut(s) 675
MspA1I CMGCKG 3 cut(s) 329, 2174, 2233
MspI CCGG 3 cut(s) 122, 864, 1381
MspR9I CCNGG 6 cut(s) 781, 865, 1440, 1506, 1573, 1924
MunI CAATTG 1 cut(s) 849
Mva1269I GAATGC 2 cut(s) 905, 1408
MvaI CCWGG 5 cut(s) 781, 1440, 1506, 1573, 1924
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 7 cut(s) 92, 1781, 2053, 2180, 2357, 2493, 2641
NciI CCSGG 1 cut(s) 865
NcoI CCATGG 2 cut(s) 933, 1872
NdeI CATATG 2 cut(s) 878, 1336
NmeAIII GCCGAG 2 cut(s) 193, 2087
NmuCI GTSAC 1 cut(s) 1500
NspV TTCGAA 2 cut(s) 1016, 1242
OliI CACNNNNGTG 1 cut(s) 2674
PagI TCATGA 1 cut(s) 1858
PciSI GCTCTTC 1 cut(s) 2387
PcsI WCGNNNNNNNCGW 1 cut(s) 2077
PctI GAATGC 2 cut(s) 905, 1408
PdmI GAANNNNTTC 3 cut(s) 1662, 1685, 2606
PfoI TCCNGGA 1 cut(s) 863
PkrI GCNGC 7 cut(s) 94, 920, 1588, 1774, 2329, 2495, 2646
PleI GAGTC 4 cut(s) 213, 454, 1636, 2134
PpsI GAGTC 4 cut(s) 213, 454, 1636, 2134
PshBI ATTAAT 1 cut(s) 117
PsiI TTATAA 1 cut(s) 1200
Psp1406I AACGTT 1 cut(s) 1542
Psp6I CCWGG 5 cut(s) 779, 1438, 1504, 1571, 1922
PspEI GGTNACC 1 cut(s) 1651
PspGI CCWGG 5 cut(s) 779, 1438, 1504, 1571, 1922
PspPI GGNCC 2 cut(s) 137, 1528
PstNI CAGNNNCTG 1 cut(s) 2294
PsuI RGATCY 2 cut(s) 1229, 1879
PvuII CAGCTG 2 cut(s) 2174, 2233
RsaI GTAC 4 cut(s) 639, 1355, 1565, 2140
RsaNI GTAC 4 cut(s) 638, 1354, 1564, 2139
RseI CAYNNNNRTG 4 cut(s) 498, 898, 1200, 2674
SapI GCTCTTC 1 cut(s) 2387
SaqAI TTAA 6 cut(s) 117, 342, 830, 1539, 1721, 1823
SatI GCNGC 7 cut(s) 93, 919, 1587, 1773, 2328, 2494, 2645
Sau96I GGNCC 2 cut(s) 137, 1528
SchI GAGTC 4 cut(s) 213, 455, 1637, 2135
ScrFI CCNGG 6 cut(s) 781, 865, 1440, 1506, 1573, 1924
SduI GDGCHC 1 cut(s) 1615
SfaNI GCATC 1 cut(s) 608
SfcI CTRYAG 3 cut(s) 951, 1590, 1641
SfuI TTCGAA 2 cut(s) 1016, 1242
SinI GGWCC 1 cut(s) 1528
SmiMI CAYNNNNRTG 4 cut(s) 498, 898, 1200, 2674
SmlI CTYRAG 3 cut(s) 198, 641, 2432
SmoI CTYRAG 3 cut(s) 198, 641, 2432
SsiI CCGC 6 cut(s) 10, 241, 329, 731, 1022, 1531
SspI AATATT 1 cut(s) 1708
SspMI CTAG 5 cut(s) 104, 1325, 1751, 1953, 2262
StyD4I CCNGG 6 cut(s) 779, 863, 1438, 1504, 1571, 1922
StyI CCWWGG 4 cut(s) 933, 1486, 1849, 1872
TaaI ACNGT 5 cut(s) 42, 620, 1358, 1651, 2607
TaiI ACGT 4 cut(s) 740, 1545, 1947, 1960
TaqI TCGA 7 cut(s) 230, 262, 595, 1016, 1242, 2266, 2600
TatI WGTACW 2 cut(s) 637, 1353
Tru1I TTAA 6 cut(s) 117, 342, 830, 1539, 1721, 1823
Tru9I TTAA 6 cut(s) 117, 342, 830, 1539, 1721, 1823
TscAI CASTG 2 cut(s) 33, 1155
TseFI GTSAC 1 cut(s) 1500
TseI GCWGC 7 cut(s) 92, 918, 1586, 1772, 2327, 2493, 2644
Tsp45I GTSAC 1 cut(s) 1500
TspGWI ACGGA 1 cut(s) 763
TspRI CASTG 2 cut(s) 33, 1155
VneI GTGCAC 1 cut(s) 1611
VpaK11BI GGWCC 1 cut(s) 1528
VspI ATTAAT 1 cut(s) 117
XapI RAATTY 7 cut(s) 996, 1065, 1096, 1595, 1685, 1727, 2338
XbaI TCTAGA 1 cut(s) 1952
XcmI CCANNNNNNNNNTGG 1 cut(s) 2475
XmnI GAANNNNTTC 3 cut(s) 1662, 1685, 2606
XspI CTAG 5 cut(s) 104, 1325, 1751, 1953, 2262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.