MD10G1005800.v1.1

Transcription factor IIIC subunit delta N-term

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0009196
Physical Location & Seq
Reverse (-)
863535 .. 863941
407 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1005800.v1.1.491

Sequence Viewer

Length: 321 bp
ATGGCTTTTCATATTTATTGCATGCTGCCTACCATTTTATTACGGGACCAAGAACCCTGTGTTCAATCGATTTCTTGGTGCCCAGTTGGGCTTGCTCCGAACGCAGGCTGCTTGCTGGCTGTCTGCACCACCCAAGGTTTCGTCAAGCCTTATCGCTCCCCATATTGTGATTTTTGTGCTGAATGGATAGAGGTTGCGAATATATCTGCCAAGCTTTATGATTATCTTGTGAGTATTAATTTTGGGGAGGTACGGGCTTCTTCATCAAAACTGCAAGATATAAATGTAAGTCCTCTCATCTGTCAGGTGCAGTCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TFIIIC_delta WD40 zf-TFIIIC

Protein Analysis

107

Amino Acids

11.82

Weight (kDa)

5.08

Isoelectric Point (pI)

66.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIIC_delta PF12657 17 - 77 7.8e-06 Transcription factor IIIC subunit delta bet-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 78
AfaI GTAC 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
ApeKI GCWGC 2 cut(s) 25, 108
AseI ATTAAT 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 46
AvaII GGWCC 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 83
BanI GGYRCC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 12, 95
BisI GCNGC 2 cut(s) 26, 109
BlsI GCNGC 2 cut(s) 27, 110
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 47, 80
BmrI ACTGGG 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 77
Bsa29I ATCGAT 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 83
BseCI ATCGAT 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 2 cut(s) 12, 95
BsgI GTGCAG 1 cut(s) 109
BshNI GGYRCC 1 cut(s) 78
BshVI ATCGAT 1 cut(s) 68
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 83
BspDI ATCGAT 1 cut(s) 68
BspLI GGNNCC 2 cut(s) 47, 80
BspT107I GGYRCC 1 cut(s) 78
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 133
BstC8I GCNNGC 5 cut(s) 23, 93, 106, 113, 117
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 12, 95
Bsu15I ATCGAT 1 cut(s) 68
BsuTUI ATCGAT 1 cut(s) 68
Cac8I GCNNGC 5 cut(s) 23, 93, 106, 113, 117
Cfr13I GGNCC 1 cut(s) 46
ClaI ATCGAT 1 cut(s) 68
Csp6I GTAC 1 cut(s) 251
CviAII CATG 1 cut(s) 22
CviJI RGCY 7 cut(s) 5, 91, 108, 119, 148, 214, 257
CviKI_1 RGCY 7 cut(s) 5, 91, 108, 119, 148, 214, 257
CviQI GTAC 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 1 cut(s) 25
FaiI YATR 7 cut(s) 12, 23, 163, 203, 219, 281, 316
FaqI GGGAC 1 cut(s) 59
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 26, 109
Fsp4HI GCNGC 2 cut(s) 26, 109
GluI GCNGC 2 cut(s) 26, 109
Hin1II CATG 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 99
HpyCH4V TGCA 4 cut(s) 21, 126, 274, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
Hsp92II CATG 1 cut(s) 25
LmnI GCTCC 2 cut(s) 100, 161
LpnPI CCDG 5 cut(s) 70, 90, 96, 101, 290
Lsp1109I GCAGC 2 cut(s) 12, 95
MboII GAAGA 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 1 cut(s) 238
MnlI CCTC 3 cut(s) 184, 241, 303
MseI TTAA 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 101
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 2 cut(s) 47, 80
NspI RCATGY 1 cut(s) 25
PaeI GCATGC 1 cut(s) 25
PkrI GCNGC 2 cut(s) 27, 110
PshBI ATTAAT 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 47, 80
PspPI GGNCC 1 cut(s) 46
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 2 cut(s) 26, 109
Sau96I GGNCC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 83
SetI ASST 5 cut(s) 139, 195, 216, 252, 309
SinI GGWCC 1 cut(s) 46
SphI GCATGC 1 cut(s) 25
Sse9I AATT 1 cut(s) 238
StyI CCWWGG 1 cut(s) 133
TaqI TCGA 1 cut(s) 68
TasI AATT 1 cut(s) 238
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TseI GCWGC 2 cut(s) 25, 108
TspDTI ATGAA 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 46
VspI ATTAAT 1 cut(s) 237
XceI RCATGY 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.