AT3G50780

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006702
Physical Location & Seq
Reverse (-)
18875399 .. 18877744
2346 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50780.1

Sequence Viewer

Length: 1563 bp
ATGGCGGAGATCAAGAATGCTAAAGTAGAACAAAGGCAAACGAAGATTAGGAATGTTCCAGTAGCTGTAACTCCTGAAGGTTTCTGGTGTTGTCCTTCTCCTGTTGCGTTTCAAAAGACTCTTAAATCTCACAACTCTCTCACCAAACACAAGCAATCTTCTCCTGCTCTTCAACCTCCTAAGCCGGAGAAGAAACCATCTTCGACTACTATTAGATCCGTCATTGCTTCTGATGAAACTCAACAGAATTTGGGTAGTTTTGATACTGTTCATAGTATTGCTGTTCCTGCGACGGTTCAAGAGAGACCACAGAGGCAAAAGGTTGAGACTTTACCGAGGAAAGTTGCTATTGAGTTTGGTGAACCGGGAAGTAGTGATGCTAAAGTGATTTTGGTTGGGAAGCAAGGTTTTTGTGTGAAGCTTAGTGTTCATAAGAAAGTTTTGGTTGATCATAGTTGTTTCTTTGCTAAGAAACTAGCTGAGAAAGATTCGGTTTTTGCTTGTCTTGAGATTGAGAGCTGTGAAGATGCTGAGCTTTACGTTGAGACTATTGGACTTATGTATTGTAAAGATATGAAGCAACGACTTATGAAACAAAATGTTAGCAGAGTTCTTCGTGTCCTCAAGGTTGCAGAGCTTCTTGGTTTTAGTTCATGTATACAGTCTTGTTTGGATTACTTAGAAGCTGTGCCTTGGGTTGGGGAAGAAGAAGAGGAGAAAGTTATCTCATCGATTCTTAGATTAAAAACTGAAGGAGTTGGTGTCACGCCTGTTCTCAAACGAGTTGCTTCTAATGCTGTGGATCCACCAAAGGAGACGCTATCACGCATCATTGAGCTTGTTTTAAGAAGCAAAGAGGAGAAAAGTCGACGTGAGATGAAATCTATTGTTCTGAAGCTTCTTAGAGAACAGAATGGAGCCAATGTAGCTGATAACTTCAATGATACAATCTATTCCTCTTGCCAAACCTGCTTGGATTCGGTTCTGTCTCTGTTTAAACAAGCTTCTGAGGGAGAGAAACCTGAGACTGATACCAAACAGATTGCTGTAGAAGCAGATAACCTCACGTGGCTCCTTGATGTGTTAGCGGAAAGACAAGCTGCAGAGGAATTCTCAGTCACATGGGCAAACCAAAAGGAGCTCGCTTTGTTACATGAGAAGCTTCCTTTAATGTCTCGTTACCATATAAGCCGTGTAACATCTCGGCTCTTTATAGGGATTGGGAGAGGAGAATTGTTGCCTTCAAAGGACACTCGACTTCTGCTACTAACAACATGGTTGCAACCGTTGTTCAATGACTATAACTGGCTTCAACATGGTTGCAGATCGTTTGATGGTAAACTAGTGGAGGAAGGAATTGGTCGGACGATACTGACACTACCATTGGAAGATCAGCAGAGCATTTTACTGTCGTGGCTCGGGAGTTTTCTAAACGGAGGAGATGGATGTCCGAATCTTCAGAGAGCTTTTGAGGTTTGGTGGAGACGATCTTTCATTAGACCTTACTCAGATCGTCAAGCTAATGGTTCGTGTCAAACAGATTCAACTTCAAAAGAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB

Protein Analysis

520

Amino Acids

58.48

Weight (kDa)

7.85

Isoelectric Point (pI)

56.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB-POZ_ANK-like PF25553 274 - 500 7.8e-60 BTB/POZ Ankyrin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 977
AccI GTMKAC 2 cut(s) 658, 868
AciI CCGC 2 cut(s) 5, 1088
AclWI GGATC 3 cut(s) 210, 797, 810
AcsI RAATTY 2 cut(s) 247, 1109
AcuI CTGAAG 4 cut(s) 96, 771, 914, 1442
AcvI CACGTG 1 cut(s) 1068
AfiI CCNNNNNNNGG 1 cut(s) 698
AgsI TTSAA 9 cut(s) 113, 173, 299, 940, 1245, 1294, 1313, 1545, 1551
AhlI ACTAGT 1 cut(s) 1342
AjiI CACGTC 1 cut(s) 872
Alw21I GWGCWC 1 cut(s) 1143
Alw26I GTCTC 8 cut(s) 298, 320, 539, 809, 993, 1019, 1179, 1477
AlwI GGATC 3 cut(s) 210, 797, 810
AlwNI CAGNNNCTG 1 cut(s) 65
Ama87I CYCGRG 1 cut(s) 1418
ApeKI GCWGC 1 cut(s) 1100
ApoI RAATTY 2 cut(s) 247, 1109
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 2 cut(s) 133, 371
AvaI CYCGRG 1 cut(s) 1418
BamHI GGATCC 1 cut(s) 802
BanII GRGCYC 1 cut(s) 1143
BbrPI CACGTG 1 cut(s) 1068
Bbv12I GWGCWC 1 cut(s) 1143
BbvI GCAGC 1 cut(s) 1087
BccI CCATC 3 cut(s) 205, 1328, 1436
BceAI ACGGC 1 cut(s) 1176
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 8 cut(s) 298, 320, 539, 809, 993, 1019, 1179, 1477
BcuI ACTAGT 1 cut(s) 1342
BfaI CTAG 2 cut(s) 476, 1343
BfmI CTRYAG 2 cut(s) 1047, 1101
BfuAI ACCTGC 1 cut(s) 977
BisI GCNGC 1 cut(s) 1101
BlpI GCTNAGC 1 cut(s) 531
BlsI GCNGC 1 cut(s) 1102
Bme1390I CCNGG 1 cut(s) 366
BmeT110I CYCGRG 1 cut(s) 1418
BmgBI CACGTC 1 cut(s) 872
BmiI GGNNCC 3 cut(s) 804, 919, 1073
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 3 cut(s) 367, 517, 837
BplI GAGNNNNNCTC 2 cut(s) 1097, 1129
Bpu10I CCTNAGC 1 cut(s) 180
Bpu1102I GCTNAGC 1 cut(s) 531
BpuEI CTTGAG 2 cut(s) 527, 608
BpuMI CCSGG 1 cut(s) 366
Bsa29I ATCGAT 1 cut(s) 731
BsaAI YACGTR 1 cut(s) 1068
BsaI GGTCTC 1 cut(s) 298
BsaJI CCNNGG 2 cut(s) 335, 692
BsaXI ACNNNNNCTCC 4 cut(s) 747, 777, 909, 939
Bsc4I CCNNNNNNNGG 1 cut(s) 698
Bse1I ACTGG 2 cut(s) 59, 1310
Bse3DI GCAATG 1 cut(s) 222
BseCI ATCGAT 1 cut(s) 731
BseDI CCNNGG 2 cut(s) 335, 692
BseGI GGATG 1 cut(s) 1451
BseLI CCNNNNNNNGG 1 cut(s) 698
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 6 cut(s) 471, 522, 999, 1014, 1128, 1521
BseNI ACTGG 2 cut(s) 59, 1310
BseRI GAGGAG 4 cut(s) 728, 872, 1242, 1452
BseXI GCAGC 1 cut(s) 1087
BshVI ATCGAT 1 cut(s) 731
BsiHKAI GWGCWC 1 cut(s) 1143
BsiHKCI CYCGRG 1 cut(s) 1418
BsiSI CCGG 2 cut(s) 185, 365
BslI CCNNNNNNNGG 1 cut(s) 698
BsmAI GTCTC 8 cut(s) 298, 320, 539, 809, 993, 1019, 1179, 1477
BsmBI CGTCTC 2 cut(s) 809, 1477
BsmI GAATGC 1 cut(s) 22
Bso31I GGTCTC 1 cut(s) 298
BsoBI CYCGRG 1 cut(s) 1418
Bsp1286I GDGCHC 1 cut(s) 1143
Bsp143I GATC 8 cut(s) 9, 215, 448, 802, 1325, 1390, 1487, 1510
Bsp1720I GCTNAGC 1 cut(s) 531
BspACI CCGC 2 cut(s) 5, 1088
BspCNI CTCAG 6 cut(s) 472, 523, 1000, 1015, 1127, 1520
BspDI ATCGAT 1 cut(s) 731
BspLI GGNNCC 3 cut(s) 804, 919, 1073
BspMAI CTGCAG 1 cut(s) 1105
BspMI ACCTGC 1 cut(s) 977
BspPI GGATC 3 cut(s) 210, 797, 810
BspQI GCTCTTC 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 2 cut(s) 59, 1310
BssECI CCNNGG 2 cut(s) 335, 692
BssMI GATC 8 cut(s) 9, 215, 448, 802, 1325, 1390, 1487, 1510
BssNAI GTATAC 1 cut(s) 659
BssT1I CCWWGG 1 cut(s) 692
Bst1107I GTATAC 1 cut(s) 659
Bst4CI ACNGT 5 cut(s) 268, 295, 663, 1287, 1410
Bst6I CTCTTC 2 cut(s) 174, 705
BstBAI YACGTR 1 cut(s) 1068
BstC8I GCNNGC 1 cut(s) 1143
BstF5I GGATG 1 cut(s) 1451
BstKTI GATC 8 cut(s) 12, 218, 451, 805, 1328, 1393, 1490, 1513
BstMAI GTCTC 8 cut(s) 298, 320, 539, 809, 993, 1019, 1179, 1477
BstMBI GATC 8 cut(s) 9, 215, 448, 802, 1325, 1390, 1487, 1510
BstMWI GCNNNNNNNGC 5 cut(s) 287, 794, 926, 969, 1052
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 2 cut(s) 1047, 1101
BstV1I GCAGC 1 cut(s) 1087
BstX2I RGATCY 2 cut(s) 215, 802
BstYI RGATCY 2 cut(s) 215, 802
BstZ17I GTATAC 1 cut(s) 659
Bsu15I ATCGAT 1 cut(s) 731
BsuTUI ATCGAT 1 cut(s) 731
BtrI CACGTC 1 cut(s) 872
BtsCI GGATG 1 cut(s) 1451
BveI ACCTGC 1 cut(s) 977
Cac8I GCNNGC 1 cut(s) 1143
CaiI CAGNNNCTG 1 cut(s) 65
ClaI ATCGAT 1 cut(s) 731
CseI GACGC 1 cut(s) 826
CviAII CATG 5 cut(s) 654, 1122, 1154, 1275, 1316
DpnI GATC 8 cut(s) 11, 217, 450, 804, 1327, 1392, 1489, 1512
DpnII GATC 8 cut(s) 9, 215, 448, 802, 1325, 1390, 1487, 1510
DraI TTTAAA 1 cut(s) 997
Eam1104I CTCTTC 2 cut(s) 174, 705
EarI CTCTTC 2 cut(s) 174, 705
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 1141
Eco130I CCWWGG 1 cut(s) 692
Eco24I GRGCYC 1 cut(s) 1143
Eco31I GGTCTC 1 cut(s) 298
Eco53kI GAGCTC 1 cut(s) 1141
Eco57I CTGAAG 4 cut(s) 96, 771, 914, 1442
Eco72I CACGTG 1 cut(s) 1068
Eco88I CYCGRG 1 cut(s) 1418
EcoICRI GAGCTC 1 cut(s) 1141
EcoRI GAATTC 1 cut(s) 1109
EcoT14I CCWWGG 1 cut(s) 692
EcoT38I GRGCYC 1 cut(s) 1143
ErhI CCWWGG 1 cut(s) 692
Esp3I CGTCTC 2 cut(s) 809, 1477
FaeI CATG 5 cut(s) 657, 1125, 1157, 1278, 1319
FatI CATG 5 cut(s) 653, 1121, 1153, 1274, 1315
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 2 cut(s) 658, 868
Fnu4HI GCNGC 1 cut(s) 1101
FokI GGATG 1 cut(s) 1458
FriOI GRGCYC 1 cut(s) 1143
Fsp4HI GCNGC 1 cut(s) 1101
FspBI CTAG 2 cut(s) 476, 1343
GluI GCNGC 1 cut(s) 1101
HapII CCGG 2 cut(s) 185, 365
HgaI GACGC 1 cut(s) 826
Hin1II CATG 5 cut(s) 657, 1125, 1157, 1278, 1319
HincII GTYRAC 1 cut(s) 869
HindII GTYRAC 1 cut(s) 869
HindIII AAGCTT 4 cut(s) 419, 896, 1002, 1160
HinfI GANTC 6 cut(s) 118, 488, 733, 977, 1453, 1541
HpaII CCGG 2 cut(s) 185, 365
HphI GGTGA 2 cut(s) 133, 371
Hpy166II GTNNAC 4 cut(s) 362, 659, 869, 1340
Hpy188I TCNGA 7 cut(s) 232, 894, 1009, 1365, 1452, 1461, 1510
Hpy188III TCNNGA 5 cut(s) 13, 74, 299, 506, 1420
Hpy8I GTNNAC 4 cut(s) 362, 659, 869, 1340
Hpy99I CGWCG 2 cut(s) 295, 873
HpyAV CCTTC 5 cut(s) 71, 105, 746, 1251, 1346
HpyCH4III ACNGT 5 cut(s) 268, 295, 663, 1287, 1410
HpyCH4IV ACGT 3 cut(s) 540, 871, 1067
HpyCH4V TGCA 4 cut(s) 632, 1103, 1282, 1323
HpyF10VI GCNNNNNNNGC 5 cut(s) 287, 794, 926, 969, 1052
HpySE526I ACGT 3 cut(s) 540, 871, 1067
Hsp92II CATG 5 cut(s) 657, 1125, 1157, 1278, 1319
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 8 cut(s) 9, 215, 448, 802, 1325, 1390, 1487, 1510
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 3 cut(s) 917, 1077, 1138
Lsp1109I GCAGC 1 cut(s) 1087
LweI GCATC 3 cut(s) 367, 517, 837
MaeI CTAG 2 cut(s) 476, 1343
MaeII ACGT 3 cut(s) 540, 871, 1067
MaeIII GTNAC 6 cut(s) 67, 763, 1117, 1149, 1178, 1195
MalI GATC 8 cut(s) 11, 217, 450, 804, 1327, 1392, 1489, 1512
MboI GATC 8 cut(s) 9, 215, 448, 802, 1325, 1390, 1487, 1510
MflI RGATCY 2 cut(s) 215, 802
MhlI GDGCHC 1 cut(s) 1143
MluCI AATT 4 cut(s) 247, 1109, 1232, 1356
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 1343
MseI TTAA 5 cut(s) 123, 743, 845, 996, 1169
MspI CCGG 2 cut(s) 185, 365
MspR9I CCNGG 1 cut(s) 366
MssI GTTTAAAC 1 cut(s) 997
Mva1269I GAATGC 1 cut(s) 22
MwoI GCNNNNNNNGC 5 cut(s) 287, 794, 926, 969, 1052
NciI CCSGG 1 cut(s) 366
NdeII GATC 8 cut(s) 9, 215, 448, 802, 1325, 1390, 1487, 1510
NlaIII CATG 5 cut(s) 657, 1125, 1157, 1278, 1319
NlaIV GGNNCC 3 cut(s) 804, 919, 1073
NmeAIII GCCGAG 1 cut(s) 1183
NmuCI GTSAC 2 cut(s) 763, 1117
PciSI GCTCTTC 1 cut(s) 174
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 5 cut(s) 488, 733, 977, 1453, 1541
PkrI GCNGC 1 cut(s) 1102
PleI GAGTC 1 cut(s) 112
PmaCI CACGTG 1 cut(s) 1068
PmeI GTTTAAAC 1 cut(s) 997
PmlI CACGTG 1 cut(s) 1068
PpsI GAGTC 1 cut(s) 112
Ppu21I YACGTR 1 cut(s) 1068
Psp124BI GAGCTC 1 cut(s) 1143
PspCI CACGTG 1 cut(s) 1068
PspN4I GGNNCC 3 cut(s) 804, 919, 1073
PstI CTGCAG 1 cut(s) 1105
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 2 cut(s) 215, 802
SacI GAGCTC 1 cut(s) 1143
SalI GTCGAC 1 cut(s) 867
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 5 cut(s) 123, 743, 845, 996, 1169
SatI GCNGC 1 cut(s) 1101
Sau3AI GATC 8 cut(s) 9, 215, 448, 802, 1325, 1390, 1487, 1510
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 1 cut(s) 1143
SfaNI GCATC 3 cut(s) 367, 517, 837
SfcI CTRYAG 2 cut(s) 1047, 1101
SmlI CTYRAG 2 cut(s) 506, 623
SmoI CTYRAG 2 cut(s) 506, 623
SpeI ACTAGT 1 cut(s) 1342
Sse9I AATT 4 cut(s) 247, 1109, 1232, 1356
SsiI CCGC 2 cut(s) 5, 1088
SspMI CTAG 2 cut(s) 476, 1343
SstI GAGCTC 1 cut(s) 1143
StyD4I CCNGG 1 cut(s) 364
StyI CCWWGG 1 cut(s) 692
TaaI ACNGT 5 cut(s) 268, 295, 663, 1287, 1410
TaiI ACGT 3 cut(s) 543, 874, 1070
TaqI TCGA 4 cut(s) 203, 731, 868, 1255
TasI AATT 4 cut(s) 247, 1109, 1232, 1356
TfiI GAWTC 5 cut(s) 488, 733, 977, 1453, 1541
Tru1I TTAA 5 cut(s) 123, 743, 845, 996, 1169
Tru9I TTAA 5 cut(s) 123, 743, 845, 996, 1169
TseFI GTSAC 2 cut(s) 763, 1117
TseI GCWGC 1 cut(s) 1100
Tsp45I GTSAC 2 cut(s) 763, 1117
TspDTI ATGAA 8 cut(s) 249, 260, 419, 590, 605, 642, 893, 1483
TspGWI ACGGA 2 cut(s) 208, 1449
XapI RAATTY 2 cut(s) 247, 1109
XmiI GTMKAC 2 cut(s) 658, 868
XspI CTAG 2 cut(s) 476, 1343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.