RLG00000017199

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006702
Physical Location & Seq
Reverse (-)
14079942 .. 14083143
3202 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017199

Sequence Viewer

Length: 1617 bp
ATGGCTGAAATTAGACTTACAAAGGTAGAACAAGGCCAAACCAAGATTAGAAATGTTCCGATTGCTGTAACCCCAGAAGGTTTTTGGTGTTGTCCTTCTCCTGTTGCGTTTCAAAAGACCCTTAAAGCTCATAACTCTCTACACAAACCCAAGTCCTCATCACCACCACCACCTCCACCACCCAAGACAACAGCTCACAGAAAACAAACTATTCTGAATGAAAAGAAGCCAACTTTCGGGCCATCTAGATCAGTTTCTGATGGTCAAAGGACTCTTGGTCCGGAGGCGCCAGAGGCACCTGCCCTCGGTGCATCTTTGGTTGCAGAGAGAGTTCCGAGGCCCAAAGTCGAAAATTTGCCGAGGAAGGTGGCAATTGAGTTTGGTGAGCCTGGAACTAGTGATATGAAGGTGATTTTACTTGGGAAGCAGGGATTTTGTGTGAAGTTGAGTGTTCACAAGAATGTTCTAGTGGAGAATAGCAACTTTTTCGCTGACAAACTTGCTGAACAACAGTCTAGTTCGTCGTGCCTTGAAATTGAAGAGTGCGAGGATGTTGAAATATATGTTGAAACTGTTGGGCTGATGTACTGCAAAGAAATGAGGCAACGGCTGATGAAGCAAAGCGTTTCCCGTGTACTCCGAATTCTGAAGATTGCAGAAGTGCTTGGATTCAACTCGTGCATGCAGTCATGTTTAGAATACTTGGAAGCAGTCCCGTGGGTTGGAGATGAAGAAGAAGAAAAGGTGGTCTCATCGGTCTTGCGCCTCCAGAATGAAGGTGTTGGGGTCAGTCCAGTATTAAAACGAGTCTCCTCCGACATTTCTAAAGCCCCAAAGGACACACTTTCCCACATAATTGGACTTGTTCTTGGAAGCAATGAGGAGAGAGGCAGGCGTGAAATGAAATCTGTAGTGCTCAAGCTCCTTAGGGAGAATAACAGTGTCTCAAGCTCTTCCAGTCCATCCGATGTCTGCAATCAAACACTTTATGACTCCTGCAGAAACTGTTCAAGTTTGCTACTGTCGCTGTTCAAGCAGGCAGCAGAACCAGAGTCTCCCGAAAAATCTGTGGACAACAAAGACCCTCTGGTAAAGCAAATAGCTTTGGCGTCTGATAACCTCTCATGGTTGCTTGATATCTTGGCTGACAGGCAAGCGGCAGATGAATTTGCAGTAATGTGGGCTGGCCAGCAAGAATTGGCAGCCTTGCATATGAAGCTACCTATTGTGTCTCGTTACCATGTTAGCATTATTACAGCAAGGCTGTTTGTTGGAATTGGAAAAGGGGAGCTGTTACCGTCGAAGGATACGCGTCAACTGTTGCTACAAACATGGTTACAGCCACTGATCAATGACTACAATTGGCTGCAACATGGATGTCGGTCATTTGACCGAAAGGTTGTGGAAGAAGGGATCGGTAGGACAATTCTGACTCTGCCTCTAGAGGACCAGCAAAGTATTATGCTTTCTTGGTTGGGAAGTTTTCTCAAGTCTGGTGATAGCTGCCCAAATCTTCAGAAGGCCTTTGAAGTCTGGTGGAGGAGAACTTTTGTTAGACCATATGTGGAAGGACAACAAGGTAATTCACTCCAGTCAGATAGCTCAATGACATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB

Protein Analysis

539

Amino Acids

59.83

Weight (kDa)

7.88

Isoelectric Point (pI)

61.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB-POZ_ANK-like PF25553 283 - 519 2.6e-62 BTB/POZ Ankyrin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 307
Acc36I ACCTGC 1 cut(s) 307
AccB1I GGYRCC 2 cut(s) 286, 295
AccII CGCG 1 cut(s) 1312
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 1 cut(s) 1157
AclWI GGATC 1 cut(s) 1421
AcoI YGGCCR 1 cut(s) 1186
AcsI RAATTY 3 cut(s) 352, 642, 1166
AcuI CTGAAG 2 cut(s) 668, 1499
AcyI GRCGYC 2 cut(s) 287, 1109
AfaI GTAC 2 cut(s) 587, 636
AfiI CCNNNNNNNGG 3 cut(s) 236, 305, 722
AflIII ACRYGT 1 cut(s) 1310
AgsI TTSAA 9 cut(s) 113, 533, 539, 557, 569, 673, 1011, 1033, 1529
AhdI GACNNNNNGTC 1 cut(s) 276
AhlI ACTAGT 1 cut(s) 395
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 9 cut(s) 128, 194, 922, 951, 1103, 1219, 1291, 1503, 1602
AluI AGCT 9 cut(s) 128, 194, 922, 951, 1103, 1219, 1291, 1503, 1602
Alw21I GWGCWC 1 cut(s) 918
Alw26I GTCTC 5 cut(s) 754, 814, 949, 1059, 1236
AlwI GGATC 1 cut(s) 1421
AlwNI CAGNNNCTG 3 cut(s) 257, 1005, 1345
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 5 cut(s) 34, 239, 338, 1186, 1521
ApeKI GCWGC 4 cut(s) 1040, 1202, 1366, 1503
ApoI RAATTY 3 cut(s) 352, 642, 1166
Asp700I GAANNNNTTC 1 cut(s) 1006
AspLEI GCGC 2 cut(s) 289, 765
AspS9I GGNCC 4 cut(s) 239, 278, 339, 1447
AsuHPI GGTGA 4 cut(s) 153, 395, 421, 1508
AvaII GGWCC 2 cut(s) 278, 1447
AxyI CCTNAGG 1 cut(s) 926
BalI TGGCCA 1 cut(s) 1188
BanI GGYRCC 2 cut(s) 286, 295
BauI CACGAG 1 cut(s) 676
Bbv12I GWGCWC 1 cut(s) 918
BbvI GCAGC 4 cut(s) 1052, 1214, 1353, 1490
BccI CCATC 3 cut(s) 250, 254, 970
BceAI ACGGC 1 cut(s) 623
BcgI CGANNNNNNTGC 2 cut(s) 469, 503
BciT130I CCWGG 1 cut(s) 390
BciVI GTATCC 1 cut(s) 1300
BclI TGATCA 1 cut(s) 1347
BcoDI GTCTC 5 cut(s) 754, 814, 949, 1059, 1236
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 6 cut(s) 246, 396, 467, 516, 1442, 1615
BfmI CTRYAG 2 cut(s) 909, 997
BfoI RGCGCY 1 cut(s) 290
BfuAI ACCTGC 1 cut(s) 307
BfuI GTATCC 1 cut(s) 1300
BisI GCNGC 5 cut(s) 1041, 1158, 1203, 1367, 1504
BlsI GCNGC 5 cut(s) 1042, 1159, 1204, 1368, 1505
Bme1390I CCNGG 1 cut(s) 390
Bme18I GGWCC 2 cut(s) 278, 1447
BmeRI GACNNNNNGTC 1 cut(s) 276
BmgT120I GGNCC 4 cut(s) 239, 278, 339, 1447
BmiI GGNNCC 2 cut(s) 288, 297
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 320
BpmI CTGGAG 2 cut(s) 752, 1574
BpuEI CTTGAG 3 cut(s) 902, 931, 1472
BsaHI GRCGYC 2 cut(s) 287, 1109
BsaI GGTCTC 1 cut(s) 754
BsaJI CCNNGG 4 cut(s) 304, 335, 359, 716
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 305, 722
Bse1I ACTGG 3 cut(s) 794, 957, 1591
Bse21I CCTNAGG 1 cut(s) 926
Bse3DI GCAATG 1 cut(s) 883
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 4 cut(s) 304, 335, 359, 716
BseGI GGATG 4 cut(s) 556, 962, 1382, 1610
BseLI CCNNNNNNNGG 3 cut(s) 236, 305, 722
BseMI GCAATG 1 cut(s) 883
BseNI ACTGG 3 cut(s) 794, 957, 1591
BseRI GAGGAG 3 cut(s) 802, 896, 1555
BseXI GCAGC 4 cut(s) 1052, 1214, 1353, 1490
Bsh1236I CGCG 1 cut(s) 1312
BshFI GGCC 5 cut(s) 36, 241, 340, 1188, 1523
BshNI GGYRCC 2 cut(s) 286, 295
BsiHKAI GWGCWC 1 cut(s) 918
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 698
BslI CCNNNNNNNGG 3 cut(s) 236, 305, 722
BsmAI GTCTC 5 cut(s) 754, 814, 949, 1059, 1236
BsmFI GGGAC 1 cut(s) 698
BsnI GGCC 5 cut(s) 36, 241, 340, 1188, 1523
Bso31I GGTCTC 1 cut(s) 754
Bsp1286I GDGCHC 1 cut(s) 918
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 3 cut(s) 248, 1347, 1413
BspACI CCGC 1 cut(s) 1157
BspANI GGCC 5 cut(s) 36, 241, 340, 1188, 1523
BspEI TCCGGA 1 cut(s) 280
BspFNI CGCG 1 cut(s) 1312
BspLI GGNNCC 2 cut(s) 288, 297
BspMAI CTGCAG 1 cut(s) 1001
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 1 cut(s) 1421
BspQI GCTCTTC 1 cut(s) 958
BspT107I GGYRCC 2 cut(s) 286, 295
BspTNI GGTCTC 1 cut(s) 754
BsrDI GCAATG 1 cut(s) 883
BsrI ACTGG 3 cut(s) 794, 957, 1591
BssECI CCNNGG 4 cut(s) 304, 335, 359, 716
BssMI GATC 3 cut(s) 248, 1347, 1413
BssNI GRCGYC 2 cut(s) 287, 1109
BssSI CACGAG 1 cut(s) 676
Bst2BI CACGAG 1 cut(s) 676
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 7 cut(s) 513, 574, 941, 1007, 1023, 1299, 1320
Bst6I CTCTTC 2 cut(s) 534, 958
BstACI GRCGYC 2 cut(s) 287, 1109
BstC8I GCNNGC 6 cut(s) 683, 893, 1038, 1155, 1186, 1190
BstDEI CTNAG 1 cut(s) 926
BstDSI CCRYGG 1 cut(s) 716
BstF5I GGATG 4 cut(s) 556, 962, 1382, 1610
BstFNI CGCG 1 cut(s) 1312
BstH2I RGCGCY 1 cut(s) 290
BstHHI GCGC 2 cut(s) 289, 765
BstKTI GATC 3 cut(s) 251, 1350, 1416
BstMAI GTCTC 5 cut(s) 754, 814, 949, 1059, 1236
BstMBI GATC 3 cut(s) 248, 1347, 1413
BstMWI GCNNNNNNNGC 6 cut(s) 293, 308, 616, 1024, 1033, 1216
BstNI CCWGG 1 cut(s) 390
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 1 cut(s) 388
BstSFI CTRYAG 2 cut(s) 909, 997
BstUI CGCG 1 cut(s) 1312
BstV1I GCAGC 4 cut(s) 1052, 1214, 1353, 1490
BstXI CCANNNNNNTGG 1 cut(s) 857
Bsu36I CCTNAGG 1 cut(s) 926
BsuI GTATCC 1 cut(s) 1300
BsuRI GGCC 5 cut(s) 36, 241, 340, 1188, 1523
BtgI CCRYGG 1 cut(s) 716
BtsCI GGATG 4 cut(s) 556, 962, 1382, 1610
BtsIMutI CAGTG 2 cut(s) 946, 1343
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 6 cut(s) 683, 893, 1038, 1155, 1186, 1190
CaiI CAGNNNCTG 3 cut(s) 257, 1005, 1345
CfoI GCGC 2 cut(s) 289, 765
Cfr13I GGNCC 4 cut(s) 239, 278, 339, 1447
CseI GACGC 2 cut(s) 1098, 1301
Csp6I GTAC 2 cut(s) 586, 635
CviAII CATG 6 cut(s) 682, 690, 1125, 1241, 1332, 1373
CviQI GTAC 2 cut(s) 586, 635
DdeI CTNAG 1 cut(s) 926
DinI GGCGCC 1 cut(s) 288
DpnI GATC 3 cut(s) 250, 1349, 1415
DpnII GATC 3 cut(s) 248, 1347, 1413
DriI GACNNNNNGTC 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 1186
Eam1104I CTCTTC 2 cut(s) 534, 958
Eam1105I GACNNNNNGTC 1 cut(s) 276
EarI CTCTTC 2 cut(s) 534, 958
Eco147I AGGCCT 1 cut(s) 1523
Eco31I GGTCTC 1 cut(s) 754
Eco32I GATATC 1 cut(s) 1138
Eco47I GGWCC 2 cut(s) 278, 1447
Eco57I CTGAAG 2 cut(s) 668, 1499
Eco81I CCTNAGG 1 cut(s) 926
EcoRI GAATTC 1 cut(s) 642
EcoRII CCWGG 1 cut(s) 388
EcoRV GATATC 1 cut(s) 1138
EgeI GGCGCC 1 cut(s) 288
EheI GGCGCC 1 cut(s) 288
FaeI CATG 6 cut(s) 685, 693, 1128, 1244, 1335, 1376
FaqI GGGAC 1 cut(s) 698
FatI CATG 6 cut(s) 681, 689, 1124, 1240, 1331, 1372
FauNDI CATATG 2 cut(s) 1212, 1561
FbaI TGATCA 1 cut(s) 1347
Fnu4HI GCNGC 5 cut(s) 1041, 1158, 1203, 1367, 1504
FokI GGATG 4 cut(s) 563, 949, 1389, 1597
Fsp4HI GCNGC 5 cut(s) 1041, 1158, 1203, 1367, 1504
FspBI CTAG 6 cut(s) 246, 396, 467, 516, 1442, 1615
GlaI GCGC 2 cut(s) 288, 764
GluI GCNGC 5 cut(s) 1041, 1158, 1203, 1367, 1504
GsuI CTGGAG 2 cut(s) 752, 1574
HaeII RGCGCY 1 cut(s) 290
HaeIII GGCC 5 cut(s) 36, 241, 340, 1188, 1523
HapII CCGG 1 cut(s) 281
HgaI GACGC 2 cut(s) 1098, 1301
HhaI GCGC 2 cut(s) 289, 765
Hin1I GRCGYC 2 cut(s) 287, 1109
Hin1II CATG 6 cut(s) 685, 693, 1128, 1244, 1335, 1376
Hin6I GCGC 2 cut(s) 287, 763
HinP1I GCGC 2 cut(s) 287, 763
HincII GTYRAC 1 cut(s) 1316
HindII GTYRAC 1 cut(s) 1316
HinfI GANTC 6 cut(s) 271, 669, 807, 992, 1052, 1432
HpaII CCGG 1 cut(s) 281
HphI GGTGA 4 cut(s) 153, 395, 421, 1508
Hpy166II GTNNAC 4 cut(s) 454, 635, 1072, 1316
Hpy188III TCNNGA 5 cut(s) 246, 281, 769, 1058, 1442
Hpy8I GTNNAC 4 cut(s) 454, 635, 1072, 1316
Hpy99I CGWCG 2 cut(s) 526, 1303
HpyAV CCTTC 9 cut(s) 71, 105, 358, 400, 770, 1297, 1403, 1513, 1562
HpyCH4III ACNGT 7 cut(s) 513, 574, 941, 1007, 1023, 1299, 1320
HpyF10VI GCNNNNNNNGC 6 cut(s) 293, 308, 616, 1024, 1033, 1216
HpyF3I CTNAG 1 cut(s) 926
Hsp92I GRCGYC 2 cut(s) 287, 1109
Hsp92II CATG 6 cut(s) 685, 693, 1128, 1244, 1335, 1376
HspAI GCGC 2 cut(s) 287, 763
KasI GGCGCC 1 cut(s) 286
Kpn2I TCCGGA 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 1347
Kzo9I GATC 3 cut(s) 248, 1347, 1413
LguI GCTCTTC 1 cut(s) 958
LmnI GCTCC 2 cut(s) 927, 1288
Lsp1109I GCAGC 4 cut(s) 1052, 1214, 1353, 1490
LweI GCATC 1 cut(s) 320
MaeI CTAG 6 cut(s) 246, 396, 467, 516, 1442, 1615
MaeIII GTNAC 4 cut(s) 67, 1235, 1293, 1335
MalI GATC 3 cut(s) 250, 1349, 1415
MboI GATC 3 cut(s) 248, 1347, 1413
MboII GAAGA 8 cut(s) 551, 661, 743, 746, 749, 945, 1418, 1505
MfeI CAATTG 2 cut(s) 372, 1360
MhlI GDGCHC 1 cut(s) 918
MlsI TGGCCA 1 cut(s) 1188
MluI ACGCGT 1 cut(s) 1310
MluNI TGGCCA 1 cut(s) 1188
Mly113I GGCGCC 1 cut(s) 287
MlyI GAGTC 5 cut(s) 265, 816, 986, 1061, 1426
MmeI TCCRAC 3 cut(s) 703, 840, 1252
Mox20I TGGCCA 1 cut(s) 1188
MroI TCCGGA 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 1006
MscI TGGCCA 1 cut(s) 1188
MseI TTAA 2 cut(s) 123, 800
MslI CAYNNNNRTG 1 cut(s) 459
Msp20I TGGCCA 1 cut(s) 1188
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 390
MunI CAATTG 2 cut(s) 372, 1360
MvaI CCWGG 1 cut(s) 390
MvnI CGCG 1 cut(s) 1312
MwoI GCNNNNNNNGC 6 cut(s) 293, 308, 616, 1024, 1033, 1216
NarI GGCGCC 1 cut(s) 287
NdeI CATATG 2 cut(s) 1212, 1561
NdeII GATC 3 cut(s) 248, 1347, 1413
NlaIII CATG 6 cut(s) 685, 693, 1128, 1244, 1335, 1376
NlaIV GGNNCC 2 cut(s) 288, 297
NmeAIII GCCGAG 1 cut(s) 384
NspI RCATGY 1 cut(s) 685
PaeI GCATGC 1 cut(s) 685
PaqCI CACCTGC 1 cut(s) 307
PceI AGGCCT 1 cut(s) 1523
PciSI GCTCTTC 1 cut(s) 958
PdmI GAANNNNTTC 1 cut(s) 1006
PfeI GAWTC 1 cut(s) 669
PkrI GCNGC 5 cut(s) 1042, 1159, 1204, 1368, 1505
PleI GAGTC 5 cut(s) 265, 815, 986, 1060, 1426
PluTI GGCGCC 1 cut(s) 290
PpsI GAGTC 5 cut(s) 265, 815, 986, 1060, 1426
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 2 cut(s) 288, 297
PspPI GGNCC 4 cut(s) 239, 278, 339, 1447
PstI CTGCAG 1 cut(s) 1001
PstNI CAGNNNCTG 3 cut(s) 257, 1005, 1345
RsaI GTAC 2 cut(s) 587, 636
RsaNI GTAC 2 cut(s) 586, 635
RseI CAYNNNNRTG 1 cut(s) 459
SapI GCTCTTC 1 cut(s) 958
SaqAI TTAA 2 cut(s) 123, 800
SatI GCNGC 5 cut(s) 1041, 1158, 1203, 1367, 1504
Sau3AI GATC 3 cut(s) 248, 1347, 1413
Sau96I GGNCC 4 cut(s) 239, 278, 339, 1447
SchI GAGTC 5 cut(s) 265, 816, 986, 1061, 1426
ScrFI CCNGG 1 cut(s) 390
SduI GDGCHC 1 cut(s) 918
SfaNI GCATC 1 cut(s) 320
SfcI CTRYAG 2 cut(s) 909, 997
SfoI GGCGCC 1 cut(s) 288
SinI GGWCC 2 cut(s) 278, 1447
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 3 cut(s) 917, 946, 1487
SmoI CTYRAG 3 cut(s) 917, 946, 1487
SpeI ACTAGT 1 cut(s) 395
SphI GCATGC 1 cut(s) 685
SseBI AGGCCT 1 cut(s) 1523
SsiI CCGC 1 cut(s) 1157
SspDI GGCGCC 1 cut(s) 286
SspMI CTAG 6 cut(s) 246, 396, 467, 516, 1442, 1615
StuI AGGCCT 1 cut(s) 1523
StyD4I CCNGG 1 cut(s) 388
TaaI ACNGT 7 cut(s) 513, 574, 941, 1007, 1023, 1299, 1320
TaqI TCGA 2 cut(s) 348, 1301
TaqII GACCGA 3 cut(s) 745, 1371, 1407
TatI WGTACW 2 cut(s) 585, 634
TauI GCSGC 1 cut(s) 1160
TfiI GAWTC 1 cut(s) 669
Tru1I TTAA 2 cut(s) 123, 800
Tru9I TTAA 2 cut(s) 123, 800
TscAI CASTG 2 cut(s) 946, 1350
TseI GCWGC 4 cut(s) 1040, 1202, 1366, 1503
TspDTI ATGAA 8 cut(s) 234, 419, 629, 744, 789, 917, 1179, 1229
TspRI CASTG 2 cut(s) 946, 1350
VpaK11BI GGWCC 2 cut(s) 278, 1447
XapI RAATTY 3 cut(s) 352, 642, 1166
XbaI TCTAGA 2 cut(s) 245, 1441
XceI RCATGY 1 cut(s) 685
XcmI CCANNNNNNNNNTGG 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 1006
XspI CTAG 6 cut(s) 246, 396, 467, 516, 1442, 1615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.