FvH4_1g14330

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006702
Physical Location & Seq
Reverse (-)
7987015 .. 7991767
4753 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14330.t4

Sequence Viewer

Length: 1617 bp
ATGGCTGAACTTAGAGTTACAAAGGTAGAACAAGGCCAAACCAAGATTAGGAGTGTCCCAATTGCTGTAACCCCAGAAGGTTTTTGGTGTTGTCCTTCTCCTGTTGCGTTTCAAAAGACCCTTAAAGCTCATAACTCTTTACACAAACCCAAGTCCTCATCACCACCGCCACCTCCACCACCCAAGACAACAGCTCACAGAAAACAAACTATTCTGAATGAAAAGAAGCCAACTTTCGGGCCATCTAGATCAATTTCTGATGGTCAGAGGGCTCTTGGTCCGGAGGCACCAGACGCACCTGTCCTCGGTGCATCTATGGCTGCAGAGAGAGTTCCGAGGCCCAAAGTTGAGAACTTGCCGAGGAAGGTGGCAATTGAGTTTGGTGAGCCGGGAACTAGTGATATGAAGGTGATATTACTTGGGAAGCAGGGATTTTGTGTGAAGTTGAGCGTTCACAAGAATGTTCTAGTGGAGAATAGCAACTTTTTTGCTGATAAGCTTGCTGAACAACAGTCTAATTCGTCCTGCCTTGAAATTGAAGAGTGCGAGGATGTTGAAATATATGTTGAAACTGTTGGGTTGATGTATTGCAAAGAAATGAGGCAACGGCTGATGAAGCAAAGCGTTTCCCGTGTACTCCGAATTCTGAAGATTGCAGAAGTGCTTGGCTTCAACTCGTGCATGCAGTCATGTTTAGAATACTTGGAAGCAGTCCCGTGGGTTGGAGACGAAGAAGAAGAAAAGGTTGTCTCATCGGTCTTGCGTCTCCAGAATGAAGGTATTGGGGTCAGTCCAGTACTAAAACGAGTATCCTCTGACATTTCTAAAGCACCGAAGGACACACTTTCTCACATAATTGGGCTTGTTCTTGGAAGCAATGAGGAGAGAGGCAGGCGCGAAATGAAATCTGTAGTGCTCAAGCTCCTTAGGGAGAATAACAGTGTCTCAAGCTCTTCCAATCCATCTGATGTCTGCAATCAAACACTTTACGACTCCTGCGGAAACTGTTCCAGTTTACTATTGTCTCTGTTCAAGCAGGCAGCAGAACCAGAGTCTCCCGAGAAATCTGTGGACAACAAAGACCCTCTGGTAAAGCAAATAGCTTTGGCGTCTGATAACCTTTCATGGTTGCTTGATATCTTGGCTGACAGGCAAGCCGCAGATGAATTTGCAGTAATGTGGGCTGGCCAGCAAGAATTGGCAGCCTTGCATATGAAGCTACCTATCGTGTCTCGCTACCATGTTAGCATTATTACAGCTAGGCTGTTTGTTGGAATTGGAAAAGGGGAGCTGCTGCCGTCAAAGGATACGCGTCAACTATTGCTACAAACATGGTTACAGCCATTGATCAATGACTACAATTGGCTTCAACATGGGTGTCGGTCATTTGACCGAAAGGTTGTGGAAGAAGGGATCGGTAGGACAATTCTCACCCTGCCTCTAGAGGACCAGCAAAGTATTATGCTTTCCTGGTTAGGAAGTTTTCTCAAGTCTGGTGATAGCTGCCCAAATCTTCAGAAGGCCTTTGAAGTCTGGTGGAGGAGAACTTTTGTTAGACCATATGTCGATGGACAACAAGGTAATTCACTCCAGTCAGATAGCCCAATGACATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB

Protein Analysis

539

Amino Acids

59.75

Weight (kDa)

7.49

Isoelectric Point (pI)

59.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB-POZ_ANK-like PF25553 283 - 519 4.3e-62 BTB/POZ Ankyrin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 286
AccII CGCG 2 cut(s) 897, 1312
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 3 cut(s) 167, 999, 1158
AclWI GGATC 1 cut(s) 1421
AcoI YGGCCR 1 cut(s) 1186
AcsI RAATTY 2 cut(s) 642, 1166
AcuI CTGAAG 2 cut(s) 668, 1499
AcyI GRCGYC 1 cut(s) 1109
AfaI GTAC 2 cut(s) 636, 798
AfiI CCNNNNNNNGG 4 cut(s) 48, 236, 305, 722
AflIII ACRYGT 1 cut(s) 1310
AgsI TTSAA 9 cut(s) 113, 533, 539, 557, 569, 673, 1033, 1370, 1529
AhdI GACNNNNNGTC 1 cut(s) 1562
AhlI ACTAGT 1 cut(s) 395
AjnI CCWGG 1 cut(s) 1469
Alw21I GWGCWC 1 cut(s) 918
Alw26I GTCTC 7 cut(s) 720, 754, 770, 949, 1029, 1059, 1236
AlwI GGATC 1 cut(s) 1421
Ama87I CYCGRG 1 cut(s) 1058
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 5 cut(s) 34, 239, 338, 1186, 1521
ApeKI GCWGC 6 cut(s) 320, 1040, 1202, 1291, 1294, 1503
ApoI RAATTY 2 cut(s) 642, 1166
Asp700I GAANNNNTTC 1 cut(s) 1006
AspLEI GCGC 1 cut(s) 897
AspS9I GGNCC 4 cut(s) 239, 278, 339, 1447
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 5 cut(s) 153, 395, 421, 1423, 1508
AvaI CYCGRG 1 cut(s) 1058
AvaII GGWCC 2 cut(s) 278, 1447
AxyI CCTNAGG 1 cut(s) 926
BalI TGGCCA 1 cut(s) 1188
BanI GGYRCC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 274
BauI CACGAG 1 cut(s) 676
Bbv12I GWGCWC 1 cut(s) 918
BbvI GCAGC 6 cut(s) 307, 1052, 1214, 1278, 1281, 1490
BccI CCATC 4 cut(s) 250, 254, 970, 1562
BceAI ACGGC 2 cut(s) 623, 1282
BciT130I CCWGG 1 cut(s) 1471
BciVI GTATCC 2 cut(s) 820, 1300
BclI TGATCA 1 cut(s) 1347
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 7 cut(s) 720, 754, 770, 949, 1029, 1059, 1236
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 6 cut(s) 246, 396, 467, 1260, 1442, 1615
BfmI CTRYAG 2 cut(s) 321, 909
BfuI GTATCC 2 cut(s) 820, 1300
BisI GCNGC 7 cut(s) 321, 1041, 1158, 1203, 1292, 1295, 1504
BlsI GCNGC 7 cut(s) 322, 1042, 1159, 1204, 1293, 1296, 1505
BmcAI AGTACT 1 cut(s) 798
Bme1390I CCNGG 2 cut(s) 390, 1471
Bme18I GGWCC 2 cut(s) 278, 1447
BmeRI GACNNNNNGTC 1 cut(s) 1562
BmeT110I CYCGRG 1 cut(s) 1058
BmgT120I GGNCC 4 cut(s) 239, 278, 339, 1447
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 2 cut(s) 390, 1471
BmsI GCATC 1 cut(s) 320
BpmI CTGGAG 2 cut(s) 752, 1574
BpuEI CTTGAG 3 cut(s) 902, 931, 1472
BpuMI CCSGG 1 cut(s) 390
BsaHI GRCGYC 1 cut(s) 1109
BsaJI CCNNGG 4 cut(s) 304, 335, 359, 716
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 4 cut(s) 48, 236, 305, 722
Bse1I ACTGG 3 cut(s) 794, 1011, 1591
Bse21I CCTNAGG 1 cut(s) 926
Bse3DI GCAATG 1 cut(s) 883
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 1 cut(s) 1471
BseDI CCNNGG 4 cut(s) 304, 335, 359, 716
BseGI GGATG 2 cut(s) 556, 1610
BseLI CCNNNNNNNGG 4 cut(s) 48, 236, 305, 722
BseMI GCAATG 1 cut(s) 883
BseNI ACTGG 3 cut(s) 794, 1011, 1591
BseRI GAGGAG 2 cut(s) 896, 1555
BseXI GCAGC 6 cut(s) 307, 1052, 1214, 1278, 1281, 1490
Bsh1236I CGCG 2 cut(s) 897, 1312
BshFI GGCC 5 cut(s) 36, 241, 340, 1188, 1523
BshNI GGYRCC 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 918
BsiHKCI CYCGRG 1 cut(s) 1058
BsiSI CCGG 2 cut(s) 281, 389
BslFI GGGAC 2 cut(s) 41, 698
BslI CCNNNNNNNGG 4 cut(s) 48, 236, 305, 722
BsmAI GTCTC 7 cut(s) 720, 754, 770, 949, 1029, 1059, 1236
BsmBI CGTCTC 2 cut(s) 720, 770
BsmFI GGGAC 2 cut(s) 41, 698
BsnI GGCC 5 cut(s) 36, 241, 340, 1188, 1523
BsoBI CYCGRG 1 cut(s) 1058
Bsp1286I GDGCHC 2 cut(s) 274, 918
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 3 cut(s) 248, 1347, 1413
BspACI CCGC 3 cut(s) 167, 999, 1158
BspANI GGCC 5 cut(s) 36, 241, 340, 1188, 1523
BspEI TCCGGA 1 cut(s) 280
BspFNI CGCG 2 cut(s) 897, 1312
BspLI GGNNCC 1 cut(s) 288
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 1 cut(s) 1421
BspQI GCTCTTC 1 cut(s) 958
BspT107I GGYRCC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 883
BsrI ACTGG 3 cut(s) 794, 1011, 1591
BssECI CCNNGG 4 cut(s) 304, 335, 359, 716
BssMI GATC 3 cut(s) 248, 1347, 1413
BssNI GRCGYC 1 cut(s) 1109
BssSI CACGAG 1 cut(s) 676
Bst2BI CACGAG 1 cut(s) 676
Bst2UI CCWGG 1 cut(s) 1471
Bst4CI ACNGT 4 cut(s) 513, 574, 941, 1007
Bst6I CTCTTC 2 cut(s) 534, 958
BstACI GRCGYC 1 cut(s) 1109
BstC8I GCNNGC 7 cut(s) 501, 683, 893, 1038, 1155, 1186, 1190
BstDEI CTNAG 2 cut(s) 11, 926
BstDSI CCRYGG 1 cut(s) 716
BstF5I GGATG 2 cut(s) 556, 1610
BstFNI CGCG 2 cut(s) 897, 1312
BstHHI GCGC 1 cut(s) 897
BstKTI GATC 3 cut(s) 251, 1350, 1416
BstMAI GTCTC 7 cut(s) 720, 754, 770, 949, 1029, 1059, 1236
BstMBI GATC 3 cut(s) 248, 1347, 1413
BstMWI GCNNNNNNNGC 4 cut(s) 293, 317, 616, 1216
BstNI CCWGG 1 cut(s) 1471
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 2 cut(s) 388, 1469
BstSFI CTRYAG 2 cut(s) 321, 909
BstUI CGCG 2 cut(s) 897, 1312
BstV1I GCAGC 6 cut(s) 307, 1052, 1214, 1278, 1281, 1490
Bsu36I CCTNAGG 1 cut(s) 926
BsuI GTATCC 2 cut(s) 820, 1300
BsuRI GGCC 5 cut(s) 36, 241, 340, 1188, 1523
BtgI CCRYGG 1 cut(s) 716
BtsCI GGATG 2 cut(s) 556, 1610
BtsIMutI CAGTG 1 cut(s) 946
Cac8I GCNNGC 7 cut(s) 501, 683, 893, 1038, 1155, 1186, 1190
CfoI GCGC 1 cut(s) 897
Cfr13I GGNCC 4 cut(s) 239, 278, 339, 1447
CseI GACGC 4 cut(s) 302, 752, 1098, 1301
Csp6I GTAC 2 cut(s) 635, 797
CviAII CATG 6 cut(s) 682, 690, 1125, 1241, 1332, 1373
CviQI GTAC 2 cut(s) 635, 797
DdeI CTNAG 2 cut(s) 11, 926
DpnI GATC 3 cut(s) 250, 1349, 1415
DpnII GATC 3 cut(s) 248, 1347, 1413
DrdI GACNNNNNNGTC 1 cut(s) 299
DriI GACNNNNNGTC 1 cut(s) 1562
DseDI GACNNNNNNGTC 1 cut(s) 299
EaeI YGGCCR 1 cut(s) 1186
Eam1104I CTCTTC 2 cut(s) 534, 958
Eam1105I GACNNNNNGTC 1 cut(s) 1562
EarI CTCTTC 2 cut(s) 534, 958
Eco147I AGGCCT 1 cut(s) 1523
Eco24I GRGCYC 1 cut(s) 274
Eco32I GATATC 1 cut(s) 1138
Eco47I GGWCC 2 cut(s) 278, 1447
Eco57I CTGAAG 2 cut(s) 668, 1499
Eco81I CCTNAGG 1 cut(s) 926
Eco88I CYCGRG 1 cut(s) 1058
EcoRI GAATTC 1 cut(s) 642
EcoRII CCWGG 1 cut(s) 1469
EcoRV GATATC 1 cut(s) 1138
EcoT38I GRGCYC 1 cut(s) 274
Esp3I CGTCTC 2 cut(s) 720, 770
FaeI CATG 6 cut(s) 685, 693, 1128, 1244, 1335, 1376
FaqI GGGAC 2 cut(s) 41, 698
FatI CATG 6 cut(s) 681, 689, 1124, 1240, 1331, 1372
FauNDI CATATG 2 cut(s) 1212, 1561
FbaI TGATCA 1 cut(s) 1347
Fnu4HI GCNGC 7 cut(s) 321, 1041, 1158, 1203, 1292, 1295, 1504
FokI GGATG 2 cut(s) 563, 1597
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 7 cut(s) 321, 1041, 1158, 1203, 1292, 1295, 1504
FspBI CTAG 6 cut(s) 246, 396, 467, 1260, 1442, 1615
GlaI GCGC 1 cut(s) 896
GluI GCNGC 7 cut(s) 321, 1041, 1158, 1203, 1292, 1295, 1504
GsuI CTGGAG 2 cut(s) 752, 1574
HaeIII GGCC 5 cut(s) 36, 241, 340, 1188, 1523
HapII CCGG 2 cut(s) 281, 389
HgaI GACGC 4 cut(s) 302, 752, 1098, 1301
HhaI GCGC 1 cut(s) 897
Hin1I GRCGYC 1 cut(s) 1109
Hin1II CATG 6 cut(s) 685, 693, 1128, 1244, 1335, 1376
Hin6I GCGC 1 cut(s) 895
HinP1I GCGC 1 cut(s) 895
HincII GTYRAC 1 cut(s) 1316
HindII GTYRAC 1 cut(s) 1316
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 2 cut(s) 992, 1052
HpaII CCGG 2 cut(s) 281, 389
HphI GGTGA 5 cut(s) 153, 395, 421, 1423, 1508
Hpy166II GTNNAC 5 cut(s) 454, 635, 1016, 1072, 1316
Hpy188III TCNNGA 5 cut(s) 246, 281, 769, 1058, 1442
Hpy8I GTNNAC 5 cut(s) 454, 635, 1016, 1072, 1316
HpyAV CCTTC 8 cut(s) 71, 105, 358, 400, 770, 829, 1403, 1513
HpyCH4III ACNGT 4 cut(s) 513, 574, 941, 1007
HpyCH4V TGCA 9 cut(s) 311, 323, 591, 656, 681, 685, 975, 1172, 1210
HpyF10VI GCNNNNNNNGC 4 cut(s) 293, 317, 616, 1216
HpyF3I CTNAG 2 cut(s) 11, 926
Hsp92I GRCGYC 1 cut(s) 1109
Hsp92II CATG 6 cut(s) 685, 693, 1128, 1244, 1335, 1376
HspAI GCGC 1 cut(s) 895
Kpn2I TCCGGA 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 1347
Kzo9I GATC 3 cut(s) 248, 1347, 1413
LguI GCTCTTC 1 cut(s) 958
LmnI GCTCC 2 cut(s) 927, 1288
Lsp1109I GCAGC 6 cut(s) 307, 1052, 1214, 1278, 1281, 1490
LweI GCATC 1 cut(s) 320
MaeI CTAG 6 cut(s) 246, 396, 467, 1260, 1442, 1615
MaeIII GTNAC 3 cut(s) 16, 67, 1335
MalI GATC 3 cut(s) 250, 1349, 1415
MboI GATC 3 cut(s) 248, 1347, 1413
MboII GAAGA 8 cut(s) 551, 661, 743, 746, 749, 945, 1418, 1505
MfeI CAATTG 3 cut(s) 60, 372, 1360
MhlI GDGCHC 2 cut(s) 274, 918
MlsI TGGCCA 1 cut(s) 1188
MluI ACGCGT 1 cut(s) 1310
MluNI TGGCCA 1 cut(s) 1188
MlyI GAGTC 2 cut(s) 986, 1061
MmeI TCCRAC 2 cut(s) 703, 1252
Mox20I TGGCCA 1 cut(s) 1188
MroI TCCGGA 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 1006
MscI TGGCCA 1 cut(s) 1188
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 459
Msp20I TGGCCA 1 cut(s) 1188
MspI CCGG 2 cut(s) 281, 389
MspR9I CCNGG 2 cut(s) 390, 1471
MunI CAATTG 3 cut(s) 60, 372, 1360
MvaI CCWGG 1 cut(s) 1471
MvnI CGCG 2 cut(s) 897, 1312
MwoI GCNNNNNNNGC 4 cut(s) 293, 317, 616, 1216
NciI CCSGG 1 cut(s) 390
NdeI CATATG 2 cut(s) 1212, 1561
NdeII GATC 3 cut(s) 248, 1347, 1413
NlaIII CATG 6 cut(s) 685, 693, 1128, 1244, 1335, 1376
NlaIV GGNNCC 1 cut(s) 288
NmeAIII GCCGAG 1 cut(s) 384
NspI RCATGY 1 cut(s) 685
PaeI GCATGC 1 cut(s) 685
PceI AGGCCT 1 cut(s) 1523
PciSI GCTCTTC 1 cut(s) 958
PdmI GAANNNNTTC 1 cut(s) 1006
PkrI GCNGC 7 cut(s) 322, 1042, 1159, 1204, 1293, 1296, 1505
PleI GAGTC 2 cut(s) 986, 1060
PpsI GAGTC 2 cut(s) 986, 1060
Psp6I CCWGG 1 cut(s) 1469
PspGI CCWGG 1 cut(s) 1469
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 4 cut(s) 239, 278, 339, 1447
PstI CTGCAG 1 cut(s) 325
RsaI GTAC 2 cut(s) 636, 798
RsaNI GTAC 2 cut(s) 635, 797
RseI CAYNNNNRTG 1 cut(s) 459
SapI GCTCTTC 1 cut(s) 958
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 7 cut(s) 321, 1041, 1158, 1203, 1292, 1295, 1504
Sau3AI GATC 3 cut(s) 248, 1347, 1413
Sau96I GGNCC 4 cut(s) 239, 278, 339, 1447
ScaI AGTACT 1 cut(s) 798
SchI GAGTC 2 cut(s) 986, 1061
ScrFI CCNGG 2 cut(s) 390, 1471
SduI GDGCHC 2 cut(s) 274, 918
SfaNI GCATC 1 cut(s) 320
SfcI CTRYAG 2 cut(s) 321, 909
SinI GGWCC 2 cut(s) 278, 1447
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 3 cut(s) 917, 946, 1487
SmoI CTYRAG 3 cut(s) 917, 946, 1487
SpeI ACTAGT 1 cut(s) 395
SphI GCATGC 1 cut(s) 685
SseBI AGGCCT 1 cut(s) 1523
SsiI CCGC 3 cut(s) 167, 999, 1158
SspMI CTAG 6 cut(s) 246, 396, 467, 1260, 1442, 1615
StuI AGGCCT 1 cut(s) 1523
StyD4I CCNGG 2 cut(s) 388, 1469
TaaI ACNGT 4 cut(s) 513, 574, 941, 1007
TaqI TCGA 1 cut(s) 1566
TaqII GACCGA 3 cut(s) 745, 1371, 1407
TatI WGTACW 2 cut(s) 634, 796
TauI GCSGC 1 cut(s) 1160
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 946
TseI GCWGC 6 cut(s) 320, 1040, 1202, 1291, 1294, 1503
TspDTI ATGAA 8 cut(s) 234, 419, 629, 789, 917, 1113, 1179, 1229
TspRI CASTG 1 cut(s) 946
VpaK11BI GGWCC 2 cut(s) 278, 1447
XapI RAATTY 2 cut(s) 642, 1166
XbaI TCTAGA 2 cut(s) 245, 1441
XceI RCATGY 1 cut(s) 685
XcmI CCANNNNNNNNNTGG 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 1006
XspI CTAG 6 cut(s) 246, 396, 467, 1260, 1442, 1615
ZrmI AGTACT 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.