Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003021

Physical Location & Seq

Genomic Coordinates Reverse (-)

9545865 .. 9550798

Gene Structure 4934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0111400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGGGAGGCGGAGCCGACGACGCGTCGACCCAATCGGACGGCGGAGACGGAGTCAACATCAACGTCAGAACCCCCAGTGGCTCCAAGTTCGCCGCTCGCATCAGCCTCGGCGCCACCGTCCGGGCGCTCAAGGAAGCTCTCTCGCCCAAGTGCGACATTCCGGCTGATCAGCAGCGCCTGATTTACAAGGGCCGGATCTTGAAGGACGATCAGACTCTCCGGAGCTACGGTTTGGAGGCAGATCATGCTGTTCACTTGGTTCGTGGCTTTGCACCATCTGCTGCAGCCAACACTGCTGGTGCAACCAATGCTGGAAGTGAAAATTCTACCCAAGCAAGGGGTTTTGGATCTAATGGAGGTGGAGCATTGGGAGGATCTGGCAATGTCAATGGGATGGGCAGCACTGGTGGTTTATTTGGATCAGGGTTTCCTGACTTGGAACAAGTGCAGCAACAATTTAGAGACATAATGAACATCCCTCTCTTTGACAATCTTGCGAATAGCACTGACATGATACAGAACATGGTTATGAACAACCCTCAAATGCGTGAAATTATTGATCGGAATCCTGAGGTAGGACACGTTCTCAATGATCCTGGCACTATTCGTCAGACACTTGAAGCAGCAAGAAACCCTGAGCTTATGCGTGAGATGATGCGCAACAGCGACAGGGCTATGAGCAACATTGAAGCTTCACCTGAGGGATTTAACATGCTTAGACGTATGTATGAAAATGTACAAGAGCCATTACTGAATGCATCAACCATGGCTGGTGATGCTGGGGGTGATAGTTCAAATCCATTTGCAGCTCTGTTCGTCCCCCAAGGTGAAAACCCAACCAGAACTCAGTCAACTGCTAGTTCTGATTCAGCTACTAGGCCCCCTGCTCCAAATACTGTCCCACTTCCCAACCCATGGTCACCTACAGGCCGGGATGGTAGGCCGCAGACACCAGCTGGCCGTACTGGACTTTGTTTTCCAGAGTTTGAAGCCACGATGGGTGCAATGCAGGATACCGCTTTACTGAATCAGGCTGTACAAAACCCAGCTGTTTCTCAGCTCATGCAAAACATCATCTCCAGTCCTCAGAATATGAGTGAGAATCTTGGGTCCGACCCCCAGTTACGCAGCATGCTTGATTCAAATTCTTTCTTTAGAGAAATGATGCAAAACCCTGAATTTTTTCGTCAGTTGGCTTCTCCTGAGACTATGCAGTTATTCTTGATTTTGCTACAATCACTTATGTTGCTGCTAGGTGACCAACAACAACAATCAACCCAGGAACCAGGAGAGACAGGACAGACTGGTGGAGACACAGGATCAGTTGATAGCACGGGGTTAGAGATGCTGATGAACATGTTTGGTGGGCTTGGCACTGGCAGCCCGGCTGTTCCCAACAGACCAAATGTGCCACCGGAGGAACTCTATGCTGCACAGCTTTCACAACTTCAGGAGATGGGTTTCTTTGATAGACAAGAGAACATACGGGCTCTGATGACCACTGCAGGAAATGTCCATGCAGCAGTAGAGCGACTATTGGGGAATTCTGGTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0005488 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016278 GO:0016279 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0032259 GO:0032268 GO:0033043 GO:0033044 GO:0034968 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051276 GO:0051570 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:0140110 GO:1900109 GO:1901363 GO:1901564 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SET zf-TRM13_CCCH

Protein Analysis

518

Amino Acids

55.32

Weight (kDa)

4.7

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	19 - 87	1.8e-09	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	20 - 88	5.9e-20	Ubiquitin family
UBQLN1	PF23195	148 - 268	1.9e-42	Ubiquilin-1-like domain
UBA	PF00627	476 - 512	4.9e-08	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740
fragaria_vesca	FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350
malus_domestica	MD02G1157000.v1.1 MD15G1271600.v1.1
prunus_persica	Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1
pyrus_communis	pycom02g12410 pycom15g23560
rosa_chinensis	RchiOBHm_Chr2g0103021
rosa_laevigata	RLG00000017201
rosa_multiflora	Rmu_sc0000388.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139990
rosa_rugosa	Rorug02G0111400 Rorug02G0111400 Rorug02G0111500 Rorug02G0111500
rosa_samantha	Rh2AG159700 Rh2BG166200 Rh2CG166400 Rh2DG165100
rosa_wichuraiana	Rw2G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	659
AccB1I	GGYRCC	1 cut(s)	110
AccB7I	CCANNNNNTGG	1 cut(s)	915
AccBSI	CCGCTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	26
AccII	CGCG	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	219
AciI	CCGC	5 cut(s)	9, 42, 93, 944, 1017
AclWI	GGATC	6 cut(s)	203, 355, 382, 427, 587, 1327
AcoI	YGGCCR	1 cut(s)	958
AcsI	RAATTY	4 cut(s)	322, 1144, 1178, 1543
AcuI	CTGAAG	1 cut(s)	1433
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	3 cut(s)	738, 964, 1038
AfiI	CCNNNNNNNGG	5 cut(s)	120, 336, 337, 575, 915
AflIII	ACRYGT	3 cut(s)	21, 580, 1356
AgsI	TTSAA	6 cut(s)	202, 620, 689, 795, 989, 1143
AhdI	GACNNNNNGTC	1 cut(s)	22
AjnI	CCWGG	3 cut(s)	595, 1278, 1285
Alw26I	GTCTC	5 cut(s)	39, 456, 1199, 1286, 1305
AlwI	GGATC	6 cut(s)	203, 355, 382, 427, 587, 1327
AlwNI	CAGNNNCTG	1 cut(s)	178
Aor13HI	TCCGGA	1 cut(s)	219
AoxI	GGCC	5 cut(s)	190, 878, 928, 941, 958
ApoI	RAATTY	4 cut(s)	322, 1144, 1178, 1543
Asp700I	GAANNNNTTC	1 cut(s)	1182
AspLEI	GCGC	4 cut(s)	113, 127, 177, 660
AspS9I	GGNCC	3 cut(s)	190, 879, 1110
AsuC2I	CCSGG	3 cut(s)	122, 932, 1385
AsuHPI	GGTGA	6 cut(s)	687, 785, 797, 839, 912, 1268
AvaII	GGWCC	1 cut(s)	1110
AxyI	CCTNAGG	2 cut(s)	570, 699
BanI	GGYRCC	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	1492
BccI	CCATC	5 cut(s)	283, 388, 929, 991, 1450
BceAI	ACGGC	2 cut(s)	55, 945
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	3 cut(s)	597, 1280, 1287
BciVI	GTATCC	1 cut(s)	1006
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	3 cut(s)	122, 932, 1385
BcoDI	GTCTC	5 cut(s)	39, 456, 1199, 1286, 1305
BfaI	CTAG	3 cut(s)	858, 876, 1253
BfmI	CTRYAG	3 cut(s)	282, 924, 1503
BfoI	RGCGCY	3 cut(s)	114, 128, 178
BfuI	GTATCC	1 cut(s)	1006
Bme1390I	CCNGG	6 cut(s)	122, 597, 932, 1280, 1287, 1385
Bme18I	GGWCC	1 cut(s)	1110
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	190, 879, 1110
BmiI	GGNNCC	6 cut(s)	13, 82, 112, 881, 1111, 1284
BmrFI	CCNGG	6 cut(s)	122, 597, 932, 1280, 1287, 1385
BmrI	ACTGGG	2 cut(s)	69, 1114
BmsI	GCATC	6 cut(s)	108, 645, 766, 767, 1155, 1335
BmuI	ACTGGG	2 cut(s)	69, 1114
BpmI	CTGGAG	1 cut(s)	1063
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	3 cut(s)	122, 932, 1385
BsaBI	GATNNNNATC	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	5 cut(s)	106, 765, 823, 914, 1278
BsaWI	WCCGGW	2 cut(s)	219, 1414
BsaXI	ACNNNNNCTCC	6 cut(s)	36, 66, 214, 244, 1061, 1091
Bsc4I	CCNNNNNNNGG	5 cut(s)	120, 336, 337, 575, 915
Bse1I	ACTGG	7 cut(s)	75, 409, 970, 1080, 1120, 1309, 1381
Bse21I	CCTNAGG	2 cut(s)	570, 699
Bse3DI	GCAATG	2 cut(s)	388, 1011
Bse8I	GATNNNNATC	1 cut(s)	564
BseAI	TCCGGA	1 cut(s)	219
BseBI	CCWGG	3 cut(s)	597, 1280, 1287
BseDI	CCNNGG	5 cut(s)	106, 765, 823, 914, 1278
BseGI	GGATG	3 cut(s)	399, 474, 940
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	5 cut(s)	120, 336, 337, 575, 915
BseMI	GCAATG	2 cut(s)	388, 1011
BseMII	CTCAG	7 cut(s)	561, 627, 690, 860, 1070, 1100, 1194
BseNI	ACTGG	7 cut(s)	75, 409, 970, 1080, 1120, 1309, 1381
BseYI	CCCAGC	2 cut(s)	779, 1045
BsgI	GTGCAG	2 cut(s)	467, 1416
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	5 cut(s)	192, 880, 930, 943, 960
BshNI	GGYRCC	1 cut(s)	110
BsiSI	CCGG	7 cut(s)	121, 161, 193, 220, 931, 1385, 1415
BslFI	GGGAC	2 cut(s)	803, 884
BslI	CCNNNNNNNGG	5 cut(s)	120, 336, 337, 575, 915
BsmAI	GTCTC	5 cut(s)	39, 456, 1199, 1286, 1305
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	2 cut(s)	803, 884
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	5 cut(s)	192, 880, 930, 943, 960
Bsp1286I	GDGCHC	1 cut(s)	1492
Bsp13I	TCCGGA	1 cut(s)	219
Bsp1407I	TGTACA	2 cut(s)	736, 1036
Bsp19I	CCATGG	2 cut(s)	765, 914
BspACI	CCGC	5 cut(s)	9, 42, 93, 944, 1017
BspANI	GGCC	5 cut(s)	192, 880, 930, 943, 960
BspCNI	CTCAG	7 cut(s)	562, 628, 691, 859, 1069, 1099, 1195
BspEI	TCCGGA	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	6 cut(s)	13, 82, 112, 881, 1111, 1284
BspMAI	CTGCAG	2 cut(s)	286, 1507
BspPI	GGATC	6 cut(s)	203, 355, 382, 427, 587, 1327
BspT107I	GGYRCC	1 cut(s)	110
BsrBI	CCGCTC	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	388, 1011
BsrGI	TGTACA	2 cut(s)	736, 1036
BsrI	ACTGG	7 cut(s)	75, 409, 970, 1080, 1120, 1309, 1381
BssECI	CCNNGG	5 cut(s)	106, 765, 823, 914, 1278
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	3 cut(s)	765, 823, 914
Bst2UI	CCWGG	3 cut(s)	597, 1280, 1287
Bst4CI	ACNGT	3 cut(s)	118, 230, 898
BstACI	GRCGYC	1 cut(s)	111
BstAPI	GCANNNNNTGC	3 cut(s)	245, 278, 308
BstAUI	TGTACA	2 cut(s)	736, 1036
BstC8I	GCNNGC	3 cut(s)	97, 958, 1133
BstDEI	CTNAG	8 cut(s)	570, 636, 699, 716, 846, 1056, 1086, 1203
BstDSI	CCRYGG	2 cut(s)	765, 914
BstEII	GGTNACC	2 cut(s)	918, 1256
BstENI	CCTNNNNNAGG	1 cut(s)	573
BstF5I	GGATG	3 cut(s)	399, 474, 940
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	3 cut(s)	114, 128, 178
BstHHI	GCGC	4 cut(s)	113, 127, 177, 660
BstMAI	GTCTC	5 cut(s)	39, 456, 1199, 1286, 1305
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 245, 278, 293, 308, 776, 1380
BstNI	CCWGG	3 cut(s)	597, 1280, 1287
BstNSI	RCATGY	3 cut(s)	715, 1135, 1360
BstPI	GGTNACC	2 cut(s)	918, 1256
BstSCI	CCNGG	6 cut(s)	120, 595, 930, 1278, 1285, 1383
BstSFI	CTRYAG	3 cut(s)	282, 924, 1503
BstUI	CGCG	1 cut(s)	23
BstX2I	RGATCY	3 cut(s)	195, 347, 374
BstYI	RGATCY	3 cut(s)	195, 347, 374
Bsu36I	CCTNAGG	2 cut(s)	570, 699
BsuI	GTATCC	1 cut(s)	1006
BsuRI	GGCC	5 cut(s)	192, 880, 930, 943, 960
BtgI	CCRYGG	2 cut(s)	765, 914
BtsCI	GGATG	3 cut(s)	399, 474, 940
BtsI	GCAGTG	2 cut(s)	291, 1500
BtsIMutI	CAGTG	6 cut(s)	82, 291, 402, 504, 1374, 1500
Cac8I	GCNNGC	3 cut(s)	97, 958, 1133
CaiI	CAGNNNCTG	1 cut(s)	178
CfoI	GCGC	4 cut(s)	113, 127, 177, 660
Cfr13I	GGNCC	3 cut(s)	190, 879, 1110
CseI	GACGC	2 cut(s)	12, 29
Csp6I	GTAC	3 cut(s)	737, 963, 1037
CviQI	GTAC	3 cut(s)	737, 963, 1037
DdeI	CTNAG	8 cut(s)	570, 636, 699, 716, 846, 1056, 1086, 1203
DinI	GGCGCC	1 cut(s)	112
DriI	GACNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	958
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EciI	GGCGGA	2 cut(s)	24, 57
Eco130I	CCWWGG	3 cut(s)	765, 823, 914
Eco24I	GRGCYC	1 cut(s)	1492
Eco47I	GGWCC	1 cut(s)	1110
Eco57I	CTGAAG	1 cut(s)	1433
Eco81I	CCTNAGG	2 cut(s)	570, 699
Eco91I	GGTNACC	2 cut(s)	918, 1256
EcoNI	CCTNNNNNAGG	1 cut(s)	573
EcoO109I	RGGNCCY	1 cut(s)	879
EcoO65I	GGTNACC	2 cut(s)	918, 1256
EcoRI	GAATTC	1 cut(s)	1543
EcoRII	CCWGG	3 cut(s)	595, 1278, 1285
EcoT14I	CCWWGG	3 cut(s)	765, 823, 914
EcoT22I	ATGCAT	1 cut(s)	760
EcoT38I	GRGCYC	1 cut(s)	1492
EgeI	GGCGCC	1 cut(s)	112
EheI	GGCGCC	1 cut(s)	112
ErhI	CCWWGG	3 cut(s)	765, 823, 914
Esp3I	CGTCTC	1 cut(s)	39
FaqI	GGGAC	2 cut(s)	803, 884
FbaI	TGATCA	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	26
FokI	GGATG	3 cut(s)	406, 461, 947
FriOI	GRGCYC	1 cut(s)	1492
FspBI	CTAG	3 cut(s)	858, 876, 1253
FspI	TGCGCA	1 cut(s)	659
GlaI	GCGC	4 cut(s)	112, 126, 176, 659
GsaI	CCCAGC	2 cut(s)	783, 1049
GsuI	CTGGAG	1 cut(s)	1063
HaeII	RGCGCY	3 cut(s)	114, 128, 178
HaeIII	GGCC	5 cut(s)	192, 880, 930, 943, 960
HapII	CCGG	7 cut(s)	121, 161, 193, 220, 931, 1385, 1415
HgaI	GACGC	2 cut(s)	12, 29
HhaI	GCGC	4 cut(s)	113, 127, 177, 660
Hin1I	GRCGYC	1 cut(s)	111
Hin6I	GCGC	4 cut(s)	111, 125, 175, 658
HinP1I	GCGC	4 cut(s)	111, 125, 175, 658
HincII	GTYRAC	3 cut(s)	27, 55, 852
HindII	GTYRAC	3 cut(s)	27, 55, 852
HindIII	AAGCTT	1 cut(s)	690
HinfI	GANTC	7 cut(s)	51, 214, 565, 866, 1027, 1102, 1139
HpaII	CCGG	7 cut(s)	121, 161, 193, 220, 931, 1385, 1415
HphI	GGTGA	6 cut(s)	687, 785, 797, 839, 912, 1268
Hpy166II	GTNNAC	4 cut(s)	27, 55, 253, 852
Hpy188I	TCNGA	9 cut(s)	37, 68, 213, 564, 612, 865, 1089, 1114, 1494
Hpy188III	TCNNGA	8 cut(s)	199, 220, 431, 569, 980, 1202, 1222, 1451
Hpy8I	GTNNAC	4 cut(s)	27, 55, 253, 852
Hpy99I	CGWCG	3 cut(s)	20, 23, 28
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	3 cut(s)	118, 230, 898
HpyCH4IV	ACGT	3 cut(s)	63, 582, 721
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 245, 278, 293, 308, 776, 1380
HpyF3I	CTNAG	8 cut(s)	570, 636, 699, 716, 846, 1056, 1086, 1203
HpySE526I	ACGT	3 cut(s)	63, 582, 721
Hsp92I	GRCGYC	1 cut(s)	111
HspAI	GCGC	4 cut(s)	111, 125, 175, 658
KasI	GGCGCC	1 cut(s)	110
Kpn2I	TCCGGA	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	166
LmnI	GCTCC	5 cut(s)	11, 86, 222, 362, 892
LweI	GCATC	6 cut(s)	108, 645, 766, 767, 1155, 1335
MaeI	CTAG	3 cut(s)	858, 876, 1253
MaeII	ACGT	3 cut(s)	63, 582, 721
MaeIII	GTNAC	3 cut(s)	918, 1122, 1256
MbiI	CCGCTC	1 cut(s)	95
MflI	RGATCY	3 cut(s)	195, 347, 374
MhlI	GDGCHC	1 cut(s)	1492
MluCI	AATT	6 cut(s)	322, 455, 552, 1144, 1178, 1543
MluI	ACGCGT	1 cut(s)	21
Mly113I	GGCGCC	1 cut(s)	111
MlyI	GAGTC	2 cut(s)	60, 208
MmeI	TCCRAC	1 cut(s)	1137
Mph1103I	ATGCAT	1 cut(s)	760
MroI	TCCGGA	1 cut(s)	219
MroXI	GAANNNNTTC	1 cut(s)	1182
MseI	TTAA	1 cut(s)	708
MslI	CAYNNNNRTG	2 cut(s)	509, 527
MspA1I	CMGCKG	2 cut(s)	956, 1049
MspI	CCGG	7 cut(s)	121, 161, 193, 220, 931, 1385, 1415
MspR9I	CCNGG	6 cut(s)	122, 597, 932, 1280, 1287, 1385
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	3 cut(s)	597, 1280, 1287
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	7 cut(s)	20, 245, 278, 293, 308, 776, 1380
NarI	GGCGCC	1 cut(s)	111
NciI	CCSGG	3 cut(s)	122, 932, 1385
NcoI	CCATGG	2 cut(s)	765, 914
NlaIV	GGNNCC	6 cut(s)	13, 82, 112, 881, 1111, 1284
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	2 cut(s)	918, 1256
NsbI	TGCGCA	1 cut(s)	659
NsiI	ATGCAT	1 cut(s)	760
NspI	RCATGY	3 cut(s)	715, 1135, 1360
PaeI	GCATGC	1 cut(s)	1135
PciI	ACATGT	1 cut(s)	1356
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	760
PdmI	GAANNNNTTC	1 cut(s)	1182
PfeI	GAWTC	5 cut(s)	565, 866, 1027, 1102, 1139
PflFI	GACNNNGTC	1 cut(s)	50
PflMI	CCANNNNNTGG	1 cut(s)	915
PleI	GAGTC	2 cut(s)	59, 208
PluTI	GGCGCC	1 cut(s)	114
PpsI	GAGTC	2 cut(s)	59, 208
PscI	ACATGT	1 cut(s)	1356
Psp6I	CCWGG	3 cut(s)	595, 1278, 1285
PspEI	GGTNACC	2 cut(s)	918, 1256
PspFI	CCCAGC	2 cut(s)	779, 1045
PspGI	CCWGG	3 cut(s)	595, 1278, 1285
PspN4I	GGNNCC	6 cut(s)	13, 82, 112, 881, 1111, 1284
PspPI	GGNCC	3 cut(s)	190, 879, 1110
PsrI	GAACNNNNNNTAC	2 cut(s)	567, 599
PstI	CTGCAG	2 cut(s)	286, 1507
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	3 cut(s)	195, 347, 374
PsyI	GACNNNGTC	1 cut(s)	50
PvuII	CAGCTG	2 cut(s)	956, 1049
RsaI	GTAC	3 cut(s)	738, 964, 1038
RsaNI	GTAC	3 cut(s)	737, 963, 1037
RseI	CAYNNNNRTG	2 cut(s)	509, 527
SalI	GTCGAC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	708
Sau96I	GGNCC	3 cut(s)	190, 879, 1110
SchI	GAGTC	2 cut(s)	60, 208
ScrFI	CCNGG	6 cut(s)	122, 597, 932, 1280, 1287, 1385
SduI	GDGCHC	1 cut(s)	1492
SfaNI	GCATC	6 cut(s)	108, 645, 766, 767, 1155, 1335
SfcI	CTRYAG	3 cut(s)	282, 924, 1503
SfoI	GGCGCC	1 cut(s)	112
SinI	GGWCC	1 cut(s)	1110
SmiMI	CAYNNNNRTG	2 cut(s)	509, 527
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SphI	GCATGC	1 cut(s)	1135
Sse9I	AATT	6 cut(s)	322, 455, 552, 1144, 1178, 1543
SsiI	CCGC	5 cut(s)	9, 42, 93, 944, 1017
SspDI	GGCGCC	1 cut(s)	110
SspMI	CTAG	3 cut(s)	858, 876, 1253
StyD4I	CCNGG	6 cut(s)	120, 595, 930, 1278, 1285, 1383
StyI	CCWWGG	3 cut(s)	765, 823, 914
TaaI	ACNGT	3 cut(s)	118, 230, 898
TaiI	ACGT	3 cut(s)	66, 585, 724
TaqI	TCGA	2 cut(s)	26, 1552
TasI	AATT	6 cut(s)	322, 455, 552, 1144, 1178, 1543
TatI	WGTACW	2 cut(s)	736, 1036
TauI	GCSGC	2 cut(s)	95, 946
TfiI	GAWTC	5 cut(s)	565, 866, 1027, 1102, 1139
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	6 cut(s)	82, 298, 409, 511, 1381, 1507
TseFI	GTSAC	2 cut(s)	918, 1256
Tsp45I	GTSAC	2 cut(s)	918, 1256
TspDTI	ATGAA	4 cut(s)	485, 545, 744, 1367
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	6 cut(s)	82, 298, 409, 511, 1381, 1507
Tth111I	GACNNNGTC	1 cut(s)	50
Van91I	CCANNNNNTGG	1 cut(s)	915
VpaK11BI	GGWCC	1 cut(s)	1110
XagI	CCTNNNNNAGG	1 cut(s)	573
XapI	RAATTY	4 cut(s)	322, 1144, 1178, 1543
XceI	RCATGY	3 cut(s)	715, 1135, 1360
XmiI	GTMKAC	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	1182
XspI	CTAG	3 cut(s)	858, 876, 1253
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.