Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003021

Physical Location & Seq

Genomic Coordinates Reverse (-)

13109967 .. 13120994

Gene Structure 11028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1157000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4524 bp

ATGGAAGTGCTCCCTTGTTCTACCATTCGTGTTGGACAATCTGATTGCCCTCAACAGAGTTCATCAACCCCTTCTGTATATGACGGCGAATCCAACTGCCTTGAACATGAAAAGAAAGTGCAAGTGGCAGATGACATATTGCCAAATGTGGAAGGACCTCAATTAGGAAGACAAGGTGAAGTTCAAGGGGCAGTTGATGAATTGCATACTTCTGATGGATGTCAAAATGGAGCTTCAGTTATTGATTGTCGTCAATTGGAGGGTCAAAAGTCATCTAGTGGCTCGCAAGATTTTGATGATGATGACATAAATGCACAGAATTACAGTGAACCCTGCGTAACCTCTGATAACAGTCATATGATTGTAGACAGCAGGGAAAGTGCATTGCCAAACAACAGTAGGGAAGGAGAGTCATCTCTGTCAGAGTCTGCATGGCTAGAAAGTGATGAATCTGTGGCACTGTGGGTCAAGTGGAGAGGGAAGTGGCAGACAGGAATACGGTGTGCAAGAGCTGACTGCCCATTATCGACTTTGAGAGCAAAACCAACTCATGATAGGAAAAAATATTTTGTGATATTTTTTCCACACACAAGGAATTATTCTTGGGCAGACACACTACTTGTTCGTTCCATTGATGAATTTCCACACCCTATTGCATATAAAACGCACAAAGTTGGCTTAAAAGTGGTTAAAGATTTGACCATAGCACGTCGGTTTATTATGCAAAAGTTAGCTGTTGGAATGCTGAATGTTGTTGACCAATTTCATACTGAGGCTTTGATAGAGACTGCTCGTGATGTGGCTGTCTGGAAGGAATTTGCAATGGAGGCTTCTCGTTGCAGTGGCTATTCTGATCTTGGAAAGATGCTTCTGAAGCTGCGAAGTATGATATCACAGACCTACCTAAATTCTGAATGGCTAGAACGTTCATATAACTTTTGGTTGCAGCAGTGTCAGAATGCGAGTAATGCTGCAACCATTGAAGTACTTAAGGAGGAACTAGTTGACTCTATTCTCTGGAATGAAGTCCAGTCTCTCCAGAATGCACCATTGCAGCCTACATTGGGTTCCGAGTGGAAAACATGGAAGCATGAAGTTATGAAATGGTTTTCAACCTCTCATCCCACATCGAATAGTGTAGACTTTCAACAGCAGACTAGTGATGGTCCCTTAACCCCAAATCTCCAAGTTGGCAGGAAAAGGCCAAAGCTCGAAGTACGTCGTGCGGAGGCAAATGCTTCCCAGGTGGAATCTAGGGGATCAGATGAATCTATAGCCATTGAAATTGACTCTGAATTCTTTAATAATCGAGACACTTCAAATGCTGCTACATTAGCATCAGAACCCTATAAAAAAGAAGATATGAAAGATATAGCTGCACCAACAGACACACCTGGGCGAGTTGCTGATAAATGGGATGGAGTATTAGTTGAAGCTGGTAATTCTAAGTTCATCCAAACCAAAGATGTGGAAATGACACCAGCCAATGAAGTTGCTGCCATAAGATCTTCTGAGCCTGGAAGCAAAAATCGACATTGCATTGCTTATATTGAAGCCAAGGGAAGGCAATGCGTGAGGTGGGCAAATGATGGTGATGTTTACTGTTGTGTACATTTGTCCTCTCGTTTCATGGGAAGCTCTACAAAAGCTGAAGGGTCTCACTCGAGTGATCAACCACTGTGTGAAGGCACAACTGTCCTTGGAACTAGATGTAAGCATCGGTCTTTACAAGGCTATTCATTTTGTAAGAAGCACAGACCAAAGAATGATATGAAGACCATCTCAAATTTTCCAGAGTATAAACTTAAGAGAAAGTTTGAGGAGAACATTTCTAATTTAGAGACTACAAACTGCAGAGAGATGGTATTGGTCGGAGATGTTGAAAGTCCTCTACAGGTAGATCCTGTCTCAATTGGGGCTGGTAATGCCTTCCGTGAAAGAGGGAGCTTATTTGAGAAGTCCGAGTCTCCTGCCAAAGCTTGTAATACAACAGGAGAGCAGCGCTGCATAGGGTCTTGTTTCTGGGATGACAGCAACCCTTGCTTGGAAAGTCCAAAGAGGCATTCATTATATTGCGAAAAGCACCTCCCAAGCTGGCTCAAACGTGCAAGAAATGGTAAGAGTAGGATAATATCAAAAGAAGTTTTTGTAGATCTTTTGAAAGATTGTCACTCACAGGAGCAAAAGTTTAATTTACATCAAGCGTGTGAGCTCTTTTACAAGCTCTTTAAAAGTATATTATCTTTAAGAAACCCTGTTCCTAAGGATGTACAATTTCAGTGGGCCCTATCTGAAGCTTCTAATAATCTTGGCGTTGGAGAAGTATTCACAAAGTTGGTTTGCACTGAAAAGGAGAGACTTAGAGGGATTTGGGGCTTTAATGATGATGAAGATGCACATGTTGCTTCTTCTGCCATGGAAGAACAAGCTCTGTTGCAATGGACTGGGGATGACAACGAACAAGCTATGAGGTGCAAAGTTTGCTCACAGGAGTTTTCGGATGACCAAGCACTTGGAACTCACTGGATGGACAATCATAAAAAGGAAGCACAATGGCTGTTTAGAGGTTATGCATGTGCTATCTGCCTGGATTGTTTTACTAATAAGAAAGTCTTGGAAACTCATGTTCAGGAGAGACATTGTGTGCAATTTGTTGAACAATGCATGCTTTTCCAGTGTATTCCTTGTGGAAGCCACTTTGGGAATACAGACGAGTTATGGTTGCATGTGCTTGCAGTTCATCGTGATAATTTCAGGCTCTCAAAAGCTCCTCAGCCTGTCCTGTCTGCTGGTGATGTTTCTCCAAGGAAGTTTGAGTTATGCAATTCAGCTTCTGTGAAGAATAACACTGAGAATGTAAGTGGTCAACGAAAGTTTGTTTGCAGGTTTTGTGGGTTGAAGTTTGATTTACTTCCTGATCTTGGTCGTCACCATCAAGCTATTCACATGGGACCAAGTTTAGCCAGTTCTCTGCCTTCAAAGAAGGGGATACGTTATTATGCTTATAGATTAAAATCTGGGAGACTTAGTCGTCCTAGATTGAGAAAAAATTTGGCAGCAGCATCATATAGGATCAGGAATAGGGCAAATGCTACTATGAAGAAACGTATTCAAGCATCAAAGTCACTTGGTACCGGAGGAATAAATGTACAGCGTCATGCAACTGAGGCAGCAAGTCTGTCTAGATTAGGGGACTCACATTGTTCAGCAGTAGCAAGAATTCTGTTTTCTGAGATGCAGAAAACAAAATGTAGGCCGAGTAACCTAGACATTTTATCTGTTGCTCGCTCTGCTTGCTGCAAGATCAGTCTCAAAGCCATGCTGGAGGGACAATATGGAGTCCTGCCAGAAAGTTTGTATCTAAGGGCAGCCAAGCTCTGCAGTGAGTATAATATTCGGGTAGATTGGCATCAAGATGGCTTTATTTGCCCTAAAGGATGCAAAGAATTCAAGGAATGCTTTGTGTCTCCGGTGATGCCTCTTCCAATTGGTACTGTGGGGCATAGATCTCCACCTTCATCAGATCCTCGTGACGATAAGTGGGAGGTGGATGAAAGCCACTATCTTATTGATGCACATCACTTGAGCCAAAGATCCTTCCAGAAGGCTCTTGTCTTGTGTGATGATATAAGCTTTGGGCAGGAATTGGTCCCGGTGGTTTGTGTAGCAGATGAAGACCAATTGGATTCTTATCCTGCCCTTGCAGGTGGTTCTAATGACCAAAATGCTGGTGATTCCTTGCCTTGGGAGGGCTTTACCTATATTATGAAGCCCTTGCTTCATCAATCCCTGGGACTCAATACAGAGAGTTTGCAATTGGGGTGTGCATGCCCGCGTTCTACATGCTGTCCTGAAACATGTGATCATGTTTACCTTTTTGATAATGACTATGATGATGCAAAAGACATCTATGGGAAATCCATGCGTGGCAGATTCCCATATGATGAGAGAGGTCGAATTATCTTGGAGGAAGGGTACCTCGTTTATGAATGCAATCAGATGTGCAGCTGCAATAGATCTTGTCCTAATAGGGTTTTGCAGAATGGAGTAAGAGTGAAACTGGAAGTCTTCAAAACAGATAAAAAGGGATGGGGAGTCAGGGCAGGTGAAGCAATTCTCCGCGGCACATTTGTTTGCGAGTACATTGGCGAGGTTTTAGATGAGCATGAAGCAAATGAGAGGCACGACAGGTATGGAAAAGATGGTTACGGCTACTTACATGAAATTGATGCTCATGTTAATGATATGAGTAGATTGGTCGAAGGACAGGCCCATCATGTAATTGACTCAACTAATTATGGAAATGTTTCAAAATTCATCAATCATAGCTGCTCGCCTAATCTTGTGAATCACCAAGTTCTTGTGGAAAGCATGGATAGTTTGCGTGCACATATTGGTCTCTATGCGAATCAAGATATAGCGTTGGGGGAAGAAATAACATATAACTATCGATATAAACATCTTCCTGGACAAGGACATCCGTGCCATTGTGGAGCTTCCGTGTGCCGGGGGCGACTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0005488 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016278 GO:0016279 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0032259 GO:0032268 GO:0033043 GO:0033044 GO:0034968 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051276 GO:0051570 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:0140110 GO:1900109 GO:1901363 GO:1901564 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SET zf-TRM13_CCCH

Protein Analysis

1508

Amino Acids

169.58

Weight (kDa)

6.41

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3rep	PF18868	859 - 983	7.7e-65	Zinc finger C2H2-type, 3 repeats
Pre-SET	PF05033	1244 - 1344	2.8e-13	Pre-SET motif
SET	PF00856	1363 - 1483	1.4e-22	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740
fragaria_vesca	FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350
malus_domestica	MD02G1157000.v1.1 MD15G1271600.v1.1
prunus_persica	Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1
pyrus_communis	pycom02g12410 pycom15g23560
rosa_chinensis	RchiOBHm_Chr2g0103021
rosa_laevigata	RLG00000017201
rosa_multiflora	Rmu_sc0000388.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139990
rosa_rugosa	Rorug02G0111400 Rorug02G0111400 Rorug02G0111500 Rorug02G0111500
rosa_samantha	Rh2AG159700 Rh2BG166200 Rh2CG166400 Rh2DG165100
rosa_wichuraiana	Rw2G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	3695, 4094
AasI	GACNNNNNNGTC	1 cut(s)	3030
Acc36I	ACCTGC	3 cut(s)	2874, 3695, 4094
Acc65I	GGTACC	2 cut(s)	3131, 3975
AccB1I	GGYRCC	2 cut(s)	3131, 3975
AccI	GTMKAC	2 cut(s)	366, 1140
AccII	CGCG	2 cut(s)	3835, 4122
AciI	CCGC	4 cut(s)	1226, 3833, 4120, 4122
AclI	AACGTT	1 cut(s)	925
AclWI	GGATC	5 cut(s)	1267, 1895, 3080, 3518, 3588
AcsI	RAATTY	9 cut(s)	638, 815, 907, 1295, 1786, 3049, 3219, 3446, 4313
AcuI	CTGAAG	4 cut(s)	219, 893, 1671, 2313
AdeI	CACNNNGTG	1 cut(s)	1682
AfaI	GTAC	9 cut(s)	987, 1218, 1611, 2271, 3133, 3150, 3493, 3977, 4142
AfeI	AGCGCT	1 cut(s)	2003
AfiI	CCNNNNNNNGG	9 cut(s)	164, 1064, 1563, 2044, 2921, 3744, 3749, 4472, 4506
AflII	CTTAAG	2 cut(s)	989, 1805
AflIII	ACRYGT	2 cut(s)	2398, 3857
AhlI	ACTAGT	2 cut(s)	1000, 1157
AjiI	CACGTC	1 cut(s)	710
AjnI	CCWGG	6 cut(s)	1242, 1393, 1516, 2586, 3789, 4465
AjuI	GAANNNNNNNTTGG	2 cut(s)	2047, 2079
AleI	CACNNNNGTG	1 cut(s)	1665
Alw21I	GWGCWC	3 cut(s)	12, 2214, 4390
Alw44I	GTGCAC	1 cut(s)	4386
AlwI	GGATC	5 cut(s)	1267, 1895, 3080, 3518, 3588
AlwNI	CAGNNNCTG	2 cut(s)	428, 2834
Ama87I	CYCGRG	1 cut(s)	1663
Aor51HI	AGCGCT	1 cut(s)	2003
AoxI	GGCC	4 cut(s)	1202, 2283, 3254, 4269
ApaI	GGGCCC	1 cut(s)	2287
ApaLI	GTGCAC	1 cut(s)	4386
ApoI	RAATTY	9 cut(s)	638, 815, 907, 1295, 1786, 3049, 3219, 3446, 4313
Asp700I	GAANNNNTTC	2 cut(s)	4113, 4306
Asp718I	GGTACC	2 cut(s)	3131, 3975
AspLEI	GCGC	1 cut(s)	2004
AspS9I	GGNCC	7 cut(s)	155, 1166, 2283, 2284, 2951, 3649, 4270
AsuC2I	CCSGG	2 cut(s)	3653, 4508
AsuHPI	GGTGA	8 cut(s)	188, 1604, 2804, 2921, 3484, 3743, 4118, 4343
AvaI	CYCGRG	1 cut(s)	1663
AvaII	GGWCC	4 cut(s)	155, 1166, 2951, 3649
AxyI	CCTNAGG	1 cut(s)	2262
BaeGI	GKGCMC	2 cut(s)	2287, 4390
BanI	GGYRCC	2 cut(s)	3131, 3975
BanII	GRGCYC	2 cut(s)	2214, 2287
BauI	CACGAG	2 cut(s)	792, 3528
BbsI	GAAGAC	4 cut(s)	175, 1781, 3681, 4060
Bbv12I	GWGCWC	3 cut(s)	12, 2214, 4390
BbvCI	CCTCAGC	1 cut(s)	2772
BceAI	ACGGC	2 cut(s)	100, 4225
BcgI	CGANNNNNNTGC	2 cut(s)	1952, 1986
BciT130I	CCWGG	6 cut(s)	1244, 1395, 1518, 2588, 3791, 4467
BciVI	GTATCC	1 cut(s)	2982
BclI	TGATCA	2 cut(s)	1669, 3862
BcnI	CCSGG	2 cut(s)	3653, 4508
BcuI	ACTAGT	2 cut(s)	1000, 1157
BfmI	CTRYAG	4 cut(s)	1272, 1852, 1892, 3379
BfoI	RGCGCY	1 cut(s)	2005
BfrI	CTTAAG	2 cut(s)	989, 1805
BfuAI	ACCTGC	3 cut(s)	2874, 3695, 4094
BfuI	GTATCC	1 cut(s)	2982
BglII	AGATCT	4 cut(s)	1505, 2152, 3506, 4016
BmcAI	AGTACT	1 cut(s)	987
Bme1390I	CCNGG	8 cut(s)	1244, 1395, 1518, 2588, 3653, 3791, 4467, 4508
Bme18I	GGWCC	4 cut(s)	155, 1166, 2951, 3649
BmeT110I	CYCGRG	1 cut(s)	1663
BmgBI	CACGTC	1 cut(s)	710
BmgT120I	GGNCC	7 cut(s)	155, 1166, 2283, 2284, 2951, 3649, 4270
BmiI	GGNNCC	7 cut(s)	1069, 1168, 2285, 2952, 3133, 3651, 3977
BmrFI	CCNGG	8 cut(s)	1244, 1395, 1518, 2588, 3653, 3791, 4467, 4508
BmrI	ACTGGG	1 cut(s)	2454
BmuI	ACTGGG	1 cut(s)	2454
BpiI	GAAGAC	4 cut(s)	175, 1781, 3681, 4060
BpmI	CTGGAG	2 cut(s)	1022, 3344
Bpu10I	CCTNAGC	1 cut(s)	2772
BpuEI	CTTGAG	1 cut(s)	3604
BpuMI	CCSGG	2 cut(s)	3653, 4508
Bsa29I	ATCGAT	1 cut(s)	4450
BsaBI	GATNNNNATC	4 cut(s)	3013, 3408, 3576, 3690
BsaI	GGTCTC	2 cut(s)	1662, 4403
BsaWI	WCCGGW	2 cut(s)	3134, 3469
Bsc4I	CCNNNNNNNGG	9 cut(s)	164, 1064, 1563, 2044, 2921, 3744, 3749, 4472, 4506
Bse1I	ACTGG	6 cut(s)	1030, 2449, 2528, 2674, 2964, 4065
Bse21I	CCTNAGG	1 cut(s)	2262
Bse3DI	GCAATG	7 cut(s)	383, 828, 1049, 1534, 1539, 1574, 2444
Bse8I	GATNNNNATC	4 cut(s)	3013, 3408, 3576, 3690
BseBI	CCWGG	6 cut(s)	1244, 1395, 1518, 2588, 3791, 4467
BseCI	ATCGAT	1 cut(s)	4450
BseJI	GATNNNNATC	4 cut(s)	3013, 3408, 3576, 3690
BseLI	CCNNNNNNNGG	9 cut(s)	164, 1064, 1563, 2044, 2921, 3744, 3749, 4472, 4506
BseMI	GCAATG	7 cut(s)	383, 828, 1049, 1534, 1539, 1574, 2444
BseMII	CTCAG	6 cut(s)	762, 1503, 2786, 2841, 3156, 3222
BseNI	ACTGG	6 cut(s)	1030, 2449, 2528, 2674, 2964, 4065
BseRI	GAGGAG	2 cut(s)	1835, 2760
BseSI	GKGCMC	2 cut(s)	2287, 4390
BsgI	GTGCAG	2 cut(s)	1362, 4024
Bsh1236I	CGCG	2 cut(s)	3835, 4122
BshFI	GGCC	4 cut(s)	1204, 2285, 3256, 4271
BshNI	GGYRCC	2 cut(s)	3131, 3975
BshVI	ATCGAT	1 cut(s)	4450
BsiHKAI	GWGCWC	3 cut(s)	12, 2214, 4390
BsiHKCI	CYCGRG	1 cut(s)	1663
BsiSI	CCGG	4 cut(s)	3135, 3470, 3653, 4507
BslFI	GGGAC	6 cut(s)	1152, 2964, 3206, 3342, 3635, 3807
BslI	CCNNNNNNNGG	9 cut(s)	164, 1064, 1563, 2044, 2921, 3744, 3749, 4472, 4506
BsmFI	GGGAC	6 cut(s)	1152, 2964, 3206, 3342, 3635, 3807
BsmI	GAATGC	6 cut(s)	747, 964, 1048, 2062, 3461, 3995
BsnI	GGCC	4 cut(s)	1204, 2285, 3256, 4271
Bso31I	GGTCTC	2 cut(s)	1662, 4403
BsoBI	CYCGRG	1 cut(s)	1663
Bsp120I	GGGCCC	1 cut(s)	2283
Bsp1286I	GDGCHC	4 cut(s)	12, 2214, 2287, 4390
Bsp1407I	TGTACA	3 cut(s)	1609, 2269, 3148
Bsp19I	CCATGG	1 cut(s)	2415
BspACI	CCGC	4 cut(s)	1226, 3833, 4120, 4122
BspANI	GGCC	4 cut(s)	1204, 2285, 3256, 4271
BspCNI	CTCAG	6 cut(s)	763, 1504, 2785, 2842, 3157, 3223
BspDI	ATCGAT	1 cut(s)	4450
BspFNI	CGCG	2 cut(s)	3835, 4122
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	7 cut(s)	1069, 1168, 2285, 2952, 3133, 3651, 3977
BspMAI	CTGCAG	2 cut(s)	1856, 3383
BspMI	ACCTGC	3 cut(s)	2874, 3695, 4094
BspPI	GGATC	5 cut(s)	1267, 1895, 3080, 3518, 3588
BspT107I	GGYRCC	2 cut(s)	3131, 3975
BspTI	CTTAAG	2 cut(s)	989, 1805
BspTNI	GGTCTC	2 cut(s)	1662, 4403
BsrDI	GCAATG	7 cut(s)	383, 828, 1049, 1534, 1539, 1574, 2444
BsrGI	TGTACA	3 cut(s)	1609, 2269, 3148
BsrI	ACTGG	6 cut(s)	1030, 2449, 2528, 2674, 2964, 4065
BssSI	CACGAG	2 cut(s)	792, 3528
BssT1I	CCWWGG	5 cut(s)	1557, 1699, 2415, 2804, 3743
Bst2BI	CACGAG	2 cut(s)	792, 3528
Bst2UI	CCWGG	6 cut(s)	1244, 1395, 1518, 2588, 3791, 4467
Bst4CI	ACNGT	9 cut(s)	326, 353, 398, 462, 501, 1604, 1680, 1696, 3496
Bst6I	CTCTTC	1 cut(s)	3486
BstAFI	CTTAAG	2 cut(s)	989, 1805
BstAPI	GCANNNNNTGC	3 cut(s)	2040, 2402, 2481
BstAUI	TGTACA	3 cut(s)	1609, 2269, 3148
BstDSI	CCRYGG	2 cut(s)	2415, 4120
BstENI	CCTNNNNNAGG	2 cut(s)	162, 4470
BstFNI	CGCG	2 cut(s)	3835, 4122
BstH2I	RGCGCY	1 cut(s)	2005
BstHHI	GCGC	1 cut(s)	2004
BstNI	CCWGG	6 cut(s)	1244, 1395, 1518, 2588, 3791, 4467
BstNSI	RCATGY	7 cut(s)	2402, 2577, 2668, 2729, 3831, 3846, 3861
BstSCI	CCNGG	8 cut(s)	1242, 1393, 1516, 2586, 3651, 3789, 4465, 4506
BstSFI	CTRYAG	4 cut(s)	1272, 1852, 1892, 3379
BstSLI	GKGCMC	2 cut(s)	2287, 4390
BstUI	CGCG	2 cut(s)	3835, 4122
BstV2I	GAAGAC	4 cut(s)	175, 1781, 3681, 4060
BstX2I	RGATCY	7 cut(s)	1505, 1900, 2152, 3506, 3523, 3593, 4016
BstXI	CCANNNNNNTGG	3 cut(s)	1468, 2513, 3728
BstYI	RGATCY	7 cut(s)	1505, 1900, 2152, 3506, 3523, 3593, 4016
Bsu15I	ATCGAT	1 cut(s)	4450
Bsu36I	CCTNAGG	1 cut(s)	2262
BsuI	GTATCC	1 cut(s)	2982
BsuRI	GGCC	4 cut(s)	1204, 2285, 3256, 4271
BsuTUI	ATCGAT	1 cut(s)	4450
BtgI	CCRYGG	2 cut(s)	2415, 4120
BtrI	CACGTC	1 cut(s)	710
BtsI	GCAGTG	3 cut(s)	847, 956, 3388
BveI	ACCTGC	3 cut(s)	2874, 3695, 4094
CaiI	CAGNNNCTG	2 cut(s)	428, 2834
CciI	TCATGA	1 cut(s)	550
CfoI	GCGC	1 cut(s)	2004
Cfr13I	GGNCC	7 cut(s)	155, 1166, 2283, 2284, 2951, 3649, 4270
Cfr42I	CCGCGG	1 cut(s)	4123
ClaI	ATCGAT	1 cut(s)	4450
CseI	GACGC	1 cut(s)	3143
Csp6I	GTAC	9 cut(s)	986, 1217, 1610, 2270, 3132, 3149, 3492, 3976, 4141
CspCI	CAANNNNNGTGG	2 cut(s)	2261, 2296
CviQI	GTAC	9 cut(s)	986, 1217, 1610, 2270, 3132, 3149, 3492, 3976, 4141
DraI	TTTAAA	1 cut(s)	2230
DraIII	CACNNNGTG	1 cut(s)	1682
DrdI	GACNNNNNNGTC	1 cut(s)	3030
DseDI	GACNNNNNNGTC	1 cut(s)	3030
Eam1104I	CTCTTC	1 cut(s)	3486
EarI	CTCTTC	1 cut(s)	3486
Ecl136II	GAGCTC	1 cut(s)	2212
Eco130I	CCWWGG	5 cut(s)	1557, 1699, 2415, 2804, 3743
Eco24I	GRGCYC	2 cut(s)	2214, 2287
Eco31I	GGTCTC	2 cut(s)	1662, 4403
Eco32I	GATATC	1 cut(s)	891
Eco47I	GGWCC	4 cut(s)	155, 1166, 2951, 3649
Eco47III	AGCGCT	1 cut(s)	2003
Eco53kI	GAGCTC	1 cut(s)	2212
Eco57I	CTGAAG	4 cut(s)	219, 893, 1671, 2313
Eco81I	CCTNAGG	1 cut(s)	2262
Eco88I	CYCGRG	1 cut(s)	1663
EcoICRI	GAGCTC	1 cut(s)	2212
EcoNI	CCTNNNNNAGG	2 cut(s)	162, 4470
EcoO109I	RGGNCCY	2 cut(s)	155, 2284
EcoRI	GAATTC	3 cut(s)	1295, 3219, 3446
EcoRII	CCWGG	6 cut(s)	1242, 1393, 1516, 2586, 3789, 4465
EcoRV	GATATC	1 cut(s)	891
EcoT14I	CCWWGG	5 cut(s)	1557, 1699, 2415, 2804, 3743
EcoT22I	ATGCAT	2 cut(s)	2575, 2666
EcoT38I	GRGCYC	2 cut(s)	2214, 2287
ErhI	CCWWGG	5 cut(s)	1557, 1699, 2415, 2804, 3743
FalI	AAGNNNNNCTT	4 cut(s)	2597, 2629, 3443, 3475
FaqI	GGGAC	6 cut(s)	1152, 2964, 3206, 3342, 3635, 3807
FauI	CCCGC	1 cut(s)	3840
FauNDI	CATATG	2 cut(s)	357, 3940
FbaI	TGATCA	2 cut(s)	1669, 3862
FblI	GTMKAC	2 cut(s)	366, 1140
FriOI	GRGCYC	2 cut(s)	2214, 2287
GlaI	GCGC	1 cut(s)	2003
GsuI	CTGGAG	2 cut(s)	1022, 3344
HaeII	RGCGCY	1 cut(s)	2005
HaeIII	GGCC	4 cut(s)	1204, 2285, 3256, 4271
HapII	CCGG	4 cut(s)	3135, 3470, 3653, 4507
HgaI	GACGC	1 cut(s)	3143
HhaI	GCGC	1 cut(s)	2004
Hin6I	GCGC	1 cut(s)	2002
HinP1I	GCGC	1 cut(s)	2002
HincII	GTYRAC	3 cut(s)	757, 1006, 2867
HindII	GTYRAC	3 cut(s)	757, 1006, 2867
HindIII	AAGCTT	3 cut(s)	1977, 2295, 3631
HpaII	CCGG	4 cut(s)	3135, 3470, 3653, 4507
HphI	GGTGA	8 cut(s)	188, 1604, 2804, 2921, 3484, 3743, 4118, 4343
Hpy99I	CGWCG	2 cut(s)	714, 1224
HpyCH4III	ACNGT	9 cut(s)	326, 353, 398, 462, 501, 1604, 1680, 1696, 3496
HpyCH4IV	ACGT	6 cut(s)	709, 925, 1219, 2104, 2992, 3106
HpySE526I	ACGT	6 cut(s)	709, 925, 1219, 2104, 2992, 3106
HspAI	GCGC	1 cut(s)	2002
KpnI	GGTACC	2 cut(s)	3135, 3979
Ksp22I	TGATCA	2 cut(s)	1669, 3862
KspI	CCGCGG	1 cut(s)	4123
LmnI	GCTCC	6 cut(s)	15, 230, 1944, 2179, 2773, 4493
MaeII	ACGT	6 cut(s)	709, 925, 1219, 2104, 2992, 3106
MaeIII	GTNAC	7 cut(s)	337, 2168, 2927, 3123, 3260, 3530, 4205
MfeI	CAATTG	5 cut(s)	254, 1911, 3486, 3680, 3815
MflI	RGATCY	7 cut(s)	1505, 1900, 2152, 3506, 3523, 3593, 4016
MhlI	GDGCHC	4 cut(s)	12, 2214, 2287, 4390
MmeI	TCCRAC	5 cut(s)	13, 117, 718, 1852, 2296
Mph1103I	ATGCAT	2 cut(s)	2575, 2666
MroXI	GAANNNNTTC	2 cut(s)	4113, 4306
MslI	CAYNNNNRTG	3 cut(s)	1665, 3414, 4239
MspA1I	CMGCKG	2 cut(s)	4008, 4122
MspCI	CTTAAG	2 cut(s)	989, 1805
MspI	CCGG	4 cut(s)	3135, 3470, 3653, 4507
MspR9I	CCNGG	8 cut(s)	1244, 1395, 1518, 2588, 3653, 3791, 4467, 4508
MunI	CAATTG	5 cut(s)	254, 1911, 3486, 3680, 3815
Mva1269I	GAATGC	6 cut(s)	747, 964, 1048, 2062, 3461, 3995
MvaI	CCWGG	6 cut(s)	1244, 1395, 1518, 2588, 3791, 4467
MvnI	CGCG	2 cut(s)	3835, 4122
NciI	CCSGG	2 cut(s)	3653, 4508
NcoI	CCATGG	1 cut(s)	2415
NdeI	CATATG	2 cut(s)	357, 3940
NlaIV	GGNNCC	7 cut(s)	1069, 1168, 2285, 2952, 3133, 3651, 3977
NmeAIII	GCCGAG	1 cut(s)	3282
NmuCI	GTSAC	4 cut(s)	2168, 2927, 3123, 3530
NsiI	ATGCAT	2 cut(s)	2575, 2666
NspI	RCATGY	7 cut(s)	2402, 2577, 2668, 2729, 3831, 3846, 3861
OliI	CACNNNNGTG	1 cut(s)	1665
PaeI	GCATGC	2 cut(s)	2668, 3831
PaeR7I	CTCGAG	1 cut(s)	1663
PagI	TCATGA	1 cut(s)	550
PaqCI	CACCTGC	2 cut(s)	3695, 4094
PasI	CCCWGGG	1 cut(s)	3790
PciI	ACATGT	2 cut(s)	2398, 3857
PctI	GAATGC	6 cut(s)	747, 964, 1048, 2062, 3461, 3995
PdmI	GAANNNNTTC	2 cut(s)	4113, 4306
PfeI	GAWTC	9 cut(s)	89, 449, 1250, 1268, 3686, 3734, 3933, 4348, 4408
PflFI	GACNNNGTC	1 cut(s)	3027
PfoI	TCCNGGA	1 cut(s)	4465
PpuMI	RGGWCCY	1 cut(s)	155
PscI	ACATGT	2 cut(s)	2398, 3857
Psp124BI	GAGCTC	1 cut(s)	2214
Psp1406I	AACGTT	1 cut(s)	925
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	6 cut(s)	1242, 1393, 1516, 2586, 3789, 4465
PspGI	CCWGG	6 cut(s)	1242, 1393, 1516, 2586, 3789, 4465
PspN4I	GGNNCC	7 cut(s)	1069, 1168, 2285, 2952, 3133, 3651, 3977
PspOMI	GGGCCC	1 cut(s)	2283
PspPI	GGNCC	7 cut(s)	155, 1166, 2283, 2284, 2951, 3649, 4270
PspPPI	RGGWCCY	1 cut(s)	155
PspXI	VCTCGAGB	1 cut(s)	1663
PstI	CTGCAG	2 cut(s)	1856, 3383
PstNI	CAGNNNCTG	2 cut(s)	428, 2834
PsuI	RGATCY	7 cut(s)	1505, 1900, 2152, 3506, 3523, 3593, 4016
PsyI	GACNNNGTC	1 cut(s)	3027
PvuII	CAGCTG	1 cut(s)	4008
RsaI	GTAC	9 cut(s)	987, 1218, 1611, 2271, 3133, 3150, 3493, 3977, 4142
RsaNI	GTAC	9 cut(s)	986, 1217, 1610, 2270, 3132, 3149, 3492, 3976, 4141
RseI	CAYNNNNRTG	3 cut(s)	1665, 3414, 4239
SacI	GAGCTC	1 cut(s)	2214
SacII	CCGCGG	1 cut(s)	4123
Sau96I	GGNCC	7 cut(s)	155, 1166, 2283, 2284, 2951, 3649, 4270
ScaI	AGTACT	1 cut(s)	987
ScrFI	CCNGG	8 cut(s)	1244, 1395, 1518, 2588, 3653, 3791, 4467, 4508
SduI	GDGCHC	4 cut(s)	12, 2214, 2287, 4390
SfcI	CTRYAG	4 cut(s)	1272, 1852, 1892, 3379
Sfr274I	CTCGAG	1 cut(s)	1663
Sfr303I	CCGCGG	1 cut(s)	4123
SgrBI	CCGCGG	1 cut(s)	4123
SinI	GGWCC	4 cut(s)	155, 1166, 2951, 3649
SlaI	CTCGAG	1 cut(s)	1663
SmiMI	CAYNNNNRTG	3 cut(s)	1665, 3414, 4239
SmlI	CTYRAG	4 cut(s)	989, 1663, 1805, 3583
SmoI	CTYRAG	4 cut(s)	989, 1663, 1805, 3583
SpeI	ACTAGT	2 cut(s)	1000, 1157
SphI	GCATGC	2 cut(s)	2668, 3831
SsiI	CCGC	4 cut(s)	1226, 3833, 4120, 4122
SspI	AATATT	2 cut(s)	566, 3394
SstI	GAGCTC	1 cut(s)	2214
StyD4I	CCNGG	8 cut(s)	1242, 1393, 1516, 2586, 3651, 3789, 4465, 4506
StyI	CCWWGG	5 cut(s)	1557, 1699, 2415, 2804, 3743
TaaI	ACNGT	9 cut(s)	326, 353, 398, 462, 501, 1604, 1680, 1696, 3496
TaiI	ACGT	6 cut(s)	712, 928, 1222, 2107, 2995, 3109
TaqI	TCGA	9 cut(s)	527, 1130, 1212, 1309, 1531, 1664, 3955, 4260, 4450
TaqII	GACCGA	1 cut(s)	1710
TatI	WGTACW	5 cut(s)	985, 1609, 2269, 3148, 4140
TauI	GCSGC	1 cut(s)	4125
TfiI	GAWTC	9 cut(s)	89, 449, 1250, 1268, 3686, 3734, 3933, 4348, 4408
TseFI	GTSAC	4 cut(s)	2168, 2927, 3123, 3530
Tsp45I	GTSAC	4 cut(s)	2168, 2927, 3123, 3530
TspGWI	ACGGA	3 cut(s)	1922, 4470, 4489
Tth111I	GACNNNGTC	1 cut(s)	3027
Vha464I	CTTAAG	2 cut(s)	989, 1805
VneI	GTGCAC	1 cut(s)	4386
VpaK11BI	GGWCC	4 cut(s)	155, 1166, 2951, 3649
XagI	CCTNNNNNAGG	2 cut(s)	162, 4470
XapI	RAATTY	9 cut(s)	638, 815, 907, 1295, 1786, 3049, 3219, 3446, 4313
XbaI	TCTAGA	1 cut(s)	3182
XceI	RCATGY	7 cut(s)	2402, 2577, 2668, 2729, 3831, 3846, 3861
XhoI	CTCGAG	1 cut(s)	1663
XmiI	GTMKAC	2 cut(s)	366, 1140
XmnI	GAANNNNTTC	2 cut(s)	4113, 4306
ZrmI	AGTACT	1 cut(s)	987
Zsp2I	ATGCAT	2 cut(s)	2575, 2666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.