Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003021

Physical Location & Seq

Genomic Coordinates Reverse (-)

14913517 .. 14924725

Gene Structure 11209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG166400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4371 bp

ATGGAAGTGCTCCCTTGTTCGAGCGTTCGATGTGTTGAAAAATCTGACTGCCCCCAACAGAGTTCAGGAACAACTCCTGTGAATGGAGAATCTAACTGCCTTGAACCTGCAAAGCAAGTGCAAGTAATAGATCGTACAGTAGAAGGCTTATTGCCAAATGCGGAAGGGCCTCAATTAGGAACACAAGGTGTAGTTAAAGGGGCAGTTCATGAATTGCATACCTCAGAAGGATGTCCGAATGGAACTTCAAGTCTTGATTGTCAAGTGGAGAGCCAAAAGTCATCTAGTGGTTCGCATGGTTTTGAATCTTTTGATGACGACGACGTAAATGCACAGAATTACTCTACAGAACCTTCCTTAATCTCTGACAATAGTGGTCTGAAATTAGATAGCAGTGAAAATGGACTTCCATACAACAGTAGGGAAGGAGAGTCATCTCATTCAGACTCCACATGGCTAGAATGTCATGAATCGGTGCCACTGTGGGTCAAGTGGAGAGGCAAGTGGCAGGCAGGAATTCGTTGCGCAAGAGCTGACTGGCCCCTATCAACTTTGAGAGCAAAACCAACTCATGACAGGAAGAAATATTTTGTGATATTTTTTCCCCACACAAGAAATTATTCTTGGGCAGACATGCTACTTGTTCGGTCCATCGATGAAATTCCACAGCCTATTGCATATAAAACACATAATGCTGGTTTGAGAATGGTAGAAGACTTGAGTGTTGCACGTCGGTTTATCATGCAAAAGTTAGCTGTTGGAATGCTGAATATAGTTGATCAATTTCATACTGAGGCTTTAATAGAGACTGCTCGTAATGTGGTGGTCTGGAAGGAGTTTGCTATGGAGGCTTCTCGCTGTAACGGTTATTCTGATCTGGGAAAGATGCTTCTGAAGCTGCAAAGTATGATTTCGCAGAGCTACATAAATCATAATTGGCTACAGAATTCAAATCATTCTTGGGTGCAGAGGTGTCAGAATGCCTGTAGCGCTGAGACTGTTGAACTACTGAAGGAGGAATTGGTTGAGTCTATTCTCTGGAATGAAGTCCAGTCTCTTCGGAATGCAGCGTTGCAACCTACTTTGGGTTCTGAGTGGAGAACCTGGAAGCATGAAGTTATGAAATGGTTTTCAACCTCTCATCCCATATCTAATGGTGGGGAATTTCCACAGCACAGTAGTGATGCCCCTGTGACCCCAAGTCTTCAAGTTAGCAGGAAGAGGCCCAAGCTTGAAGTTCGCCGTGCAGAGGCACATGTTTCCCAGGTGGAATCTAGGGGTTCAGATGAAGCTATAGCCATTGAAATTGACTCTGAGTTCTTTAATAATCGAGAGGCTGTAAATTCTGCTACCTTAGCCTCAGAACCCGATAAAGAAGTAAATATGAAAGATGTTGCTGCACTGACTGGAGATGGTGGTGTTGCTGATAAATGGGATGACGTTGTAGTTGCAACTGGAAATTCTGTGTTTATCCAAAGCAAAGATGTGGAAATGACACCGGTCAATGATGTGGCTGGTATAAAGTCTTCTGTTCCTGGGACTAAAAATCGACAGTGCACTGCTTATATTGAAGCCAAAGGAAGGCAATGCGTGAGATGGGCGAATGATGGTGATGTTTACTGTTGTGTGCACTTGTCGTCTCGTTTCACGGGAAGCTCTACAAAATCAGAGGGATCTCACTCTATGGATACACCAATGTGTGAAGGAACAACTGTTCTTGGAACTAAATGTAAGCATCGGTCTCTTTATGGCTCTTCATTCTGTAAGAAGCATAGACCAAAAACTGAGAGGGAAACAATCATAAATACTTCAGAGAATGGACTTAAGAGAAAGTATGAGGAGAACACGTCTAGTTTAGATACCATGAACTGCAGAGAGATGGTATTGGTGGGAGATGTTGGTGCTCCACTAGAAGTGGATCCTGTTGGAATCATGGCCGGAGATGGCTTTAATGGAAGGGGGAGCCTATTTGAGAAGTCCGAACTTCCTGCCAAAGCTAGTAATGTGACTGAAGAGATGCGTTGCATAGGCTCTGGTTTGCAAGATAGCAGCAACCATTGTCTGGAAAGTCCAAAAAGGCATTCATTATATTGTGAAAAACACCTCCCAAGCTGGCTGAAACGTGCTAGAAATGGTAAGAGTAGGATAATATCAAAGGAAGTATTTGTAGATCTTTTGAAGGATTGCCACTCACATGAGCACAAGTTGCATATACATAAAGCGTGTGAGCTTTTTTACAAGCTCTTTAAAAGTATATTATCTTTAAGAAATCCTGTCCCTAAGGATGTTCAGTTTCAGTGGGCTTTATCTGAAGCTTCTAAGAATTTGGTTGTTGGGGAAATATTTACAAAGTTGGTTTGCAGTGAAAAGGAGAGACTCGTAAGACTTTGGGGCTTTAATACTGATGAAGATACACGTGAGGATGTATGTGTTTTGAACTCTGCCATGGAAGAACCAGCTCTGTTGCCTTGGGTTGTGGACGATAACCATGATGATGAAAGAGCCATCAAGTGCAAAATTTGCTCTGAGGAATTTATGGATGACCAAGCACTTGGAACTCACTGGATGGAAAATCATAAAAAGGAAGCTCAATGGCTCTTTAGAGGTTATGCATGTGCTATCTGCCTGGATTCTTTTACTAATAAAAAAGTTTTGGAAACGCATGTCCAGGACAGACACCGTGTGCAATTTGTTGAACAATGCATGCTTCTCCAGTGCATCCCTTGTGGCAGTCACTTTGGGAATAATGAGGAGTTATGGTCACATGTGCTTGTGGTACATCCTGATGATTTCAGGCCCTCAAAAGCTGTTCAACATACTCTGTCAGCTGATGATGGCTCTCCAAGGAAGTTTGAGTTGTGCAATTCAGCTTCTGTGGAGAATACCTCACAAAATTTAGCTAATGTCCGAAAGTTCGTTTGCAGGTTTTGTGGTTTGAAATTTGATTTACTTCCCGATCTTGGCCGCCACCATCAAGCTGCCCACATGGGGCCAAGTTTAGTCAGTTCTCGGCCCTCGAAGAGGGGGATACGTTATTATGCTTATAGATTAAAATCTGGGAGACTTAGCCGTCCTAGATTGAAAAAGAGTTTGGCAGCAGCATCATATAGGATCAGGAACAGAGCAAATGCTACTATAAAGAAACGCATCCAAGCGTCCAAGTCACTTAGCAGTGGAGGAATGGATATACAGAGTCAATCAACTGAGGCAGTGAGTCTTGGTAGGTTAGCAGAATCACATTGTTCAGCAGTAGCAAGGATTTTGTTTTCTGAGATGCAGAAAACAAAACGTAGGCCCAACAACCTGGACATTTTATCTGTTGCTCGCTCTGCTTGCTGCAAGATTAGTCTTGAAGTCCTGCTGCAGGGAAAATATGGAATCTTGCCACAACGCTTGTATCTGAAGGCAGCTAAGCTCTGCAGTGAGCATAACATTAAGGTAAGTTGGCATCAAGAGGGTTTCATTTGTCCTAAAGGGTGCAGGGATTTCAACGCTTTGTTGCCGTCTCCTTTGATACCTCGTCCAATTGGTACTACGGTGCACAAATCTCAACCTTTATCAGATCCTTCTGAAGAAAAGTGGGAGGTGGATGAGAGTCACTATGTTGTTGGTTCAAATCACTTGAGCCAAAGGTCTTTGCAGAAGGCTCATGTATTATGTGATGATATAAGCTTTGGCCAAGAACTAGTGCCCCTGGTCTGTGTAGCCGACGAAGGTCTTTTGGATTCTCTTCCTGCCAATGCAGGTAGTTCTACTCACCAAAATGCTGGACATTCCATGCCTTGGGAGAACTTTACCTATACTGCGAAGCCATTACTTGATCAATCCCCTGGACTGGATACAGAGAGTTTGCAATTGCGTTGTTCCTGCCCACATTCTACATGCTGTCCTGAAGCATGTGATCATGTCTACCTTTTCGATAATGACTATGATGATGCGAAAGACATCTATGGGAAACCCATGTGCGGCAGGTTCCCCTATGATGATAGAGGCCGAATTATTTTGGAGGAAGGCTACCTCGTTTATGAATGCAATCAGATGTGCAGCTGCAATAGAACGTGTCCTAATAGAGTCTTGCAGAATGGAGTAAGAGTGAAATTGGAAGTCTTCAAGACAGAGAAAAAGGGATGGGCAGTCAGGGCAGGTGAAGCAATCCTGCGTGGCACTTTTATTTGCGAGTACATTGGTGAGATTTTAGACGAAAATGAAGCAAACAAGAGGCGCAACAGGTATGACAGAGATGGTTATGGCTATCTTTTTGAAATCAATGCTCATATTAATGATATGAGCAGATTGGTAGAAGGACAGGCACAATATGTAATCGACTCTACAAACTATGGAAATGTTTCACGATTCATCAATCATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0005488 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016278 GO:0016279 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0032259 GO:0032268 GO:0033043 GO:0033044 GO:0034968 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051276 GO:0051570 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:0140110 GO:1900109 GO:1901363 GO:1901564 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SET zf-TRM13_CCCH

Protein Analysis

1456

Amino Acids

163.44

Weight (kDa)

6.58

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3rep	PF18868	872 - 996	7e-66	Zinc finger C2H2-type, 3 repeats
Pre-SET	PF05033	1256 - 1357	1.1e-10	Pre-SET motif
SET	PF00856	1376 - 1455	1.8e-10	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740
fragaria_vesca	FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350
malus_domestica	MD02G1157000.v1.1 MD15G1271600.v1.1
prunus_persica	Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1
pyrus_communis	pycom02g12410 pycom15g23560
rosa_chinensis	RchiOBHm_Chr2g0103021
rosa_laevigata	RLG00000017201
rosa_multiflora	Rmu_sc0000388.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139990
rosa_rugosa	Rorug02G0111400 Rorug02G0111400 Rorug02G0111500 Rorug02G0111500
rosa_samantha	Rh2AG159700 Rh2BG166200 Rh2CG166400 Rh2DG165100
rosa_wichuraiana	Rw2G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	4133
AasI	GACNNNNNNGTC	1 cut(s)	3069
Acc16I	TGCGCA	1 cut(s)	526
Acc36I	ACCTGC	5 cut(s)	115, 2913, 3734, 3960, 4133
AccB1I	GGYRCC	1 cut(s)	475
AccB7I	CCANNNNNTGG	2 cut(s)	2062, 3783
AccI	GTMKAC	1 cut(s)	3909
AciI	CCGC	3 cut(s)	161, 2965, 3966
AclWI	GGATC	5 cut(s)	1681, 1913, 1926, 3119, 3557
AcoI	YGGCCR	3 cut(s)	1935, 2962, 3676
AcuI	CTGAAG	8 cut(s)	914, 1031, 1794, 2031, 2331, 3422, 3591, 3912
AcvI	CACGTG	1 cut(s)	2417
AdeI	CACNNNGTG	2 cut(s)	188, 2683
AfaI	GTAC	4 cut(s)	136, 2778, 3532, 4181
AfeI	AGCGCT	1 cut(s)	991
AflII	CTTAAG	1 cut(s)	1823
AflIII	ACRYGT	5 cut(s)	1255, 1845, 2414, 2764, 4058
AgeI	ACCGGT	1 cut(s)	1498
AhdI	GACNNNNNGTC	1 cut(s)	1200
AhlI	ACTAGT	1 cut(s)	3685
AjiI	CACGTC	2 cut(s)	731, 1848
AjnI	CCWGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3693, 3829
AjuI	GAANNNNNNNTTGG	8 cut(s)	607, 639, 1004, 1036, 2065, 2097, 3074, 3106
AleI	CACNNNNGTG	2 cut(s)	1179, 1696
AloI	GAACNNNNNNTCC	2 cut(s)	1698, 1730
Alw21I	GWGCWC	6 cut(s)	12, 1559, 1632, 1906, 2202, 3543
Alw26I	GTCTC	8 cut(s)	800, 989, 1059, 1644, 1746, 2368, 3055, 3510
Alw44I	GTGCAC	3 cut(s)	1555, 1628, 3539
AlwI	GGATC	5 cut(s)	1681, 1913, 1926, 3119, 3557
AlwNI	CAGNNNCTG	1 cut(s)	2873
Aor51HI	AGCGCT	1 cut(s)	991
ApaLI	GTGCAC	3 cut(s)	1555, 1628, 3539
AseI	ATTAAT	1 cut(s)	4278
AsiGI	ACCGGT	1 cut(s)	1498
Asp700I	GAANNNNTTC	2 cut(s)	619, 4345
AspLEI	GCGC	3 cut(s)	527, 992, 4224
AspS9I	GGNCC	8 cut(s)	167, 540, 648, 1224, 2796, 2990, 3012, 3294
AsuHPI	GGTGA	4 cut(s)	1622, 3749, 4157, 4199
AvaII	GGWCC	1 cut(s)	648
AxyI	CCTNAGG	1 cut(s)	2280
BaeGI	GKGCMC	4 cut(s)	1559, 1632, 3543, 3693
BaeI	ACNNNNGTAYC	4 cut(s)	3380, 3413, 3522, 3555
BalI	TGGCCA	1 cut(s)	3678
BamHI	GGATCC	1 cut(s)	1918
BanI	GGYRCC	1 cut(s)	475
BarI	GAAGNNNNNNTAC	2 cut(s)	1510, 1542
BbrPI	CACGTG	1 cut(s)	2417
BbsI	GAAGAC	4 cut(s)	720, 1196, 1518, 4099
Bbv12I	GWGCWC	6 cut(s)	12, 1559, 1632, 1906, 2202, 3543
BceAI	ACGGC	3 cut(s)	1227, 3054, 3487
BcgI	CGANNNNNNTGC	4 cut(s)	311, 345, 1970, 2004
BciT130I	CCWGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3695, 3831
BciVI	GTATCC	3 cut(s)	1681, 3021, 3832
BclI	TGATCA	3 cut(s)	778, 3820, 3901
BcoDI	GTCTC	8 cut(s)	800, 989, 1059, 1644, 1746, 2368, 3055, 3510
BcuI	ACTAGT	1 cut(s)	3685
BfaI	CTAG	9 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 3075, 3686
BfmI	CTRYAG	7 cut(s)	345, 941, 985, 1293, 1870, 3362, 3418
BfoI	RGCGCY	1 cut(s)	993
BfrI	CTTAAG	1 cut(s)	1823
BfuAI	ACCTGC	5 cut(s)	115, 2913, 3734, 3960, 4133
BfuI	GTATCC	3 cut(s)	1681, 3021, 3832
BglII	AGATCT	1 cut(s)	2170
BlpI	GCTNAGC	1 cut(s)	3411
Bme1390I	CCNGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3695, 3831
Bme18I	GGWCC	1 cut(s)	648
BmeRI	GACNNNNNGTC	1 cut(s)	1200
BmgBI	CACGTC	2 cut(s)	731, 1848
BmgT120I	GGNCC	8 cut(s)	167, 540, 648, 1224, 2796, 2990, 3012, 3294
BmiI	GGNNCC	6 cut(s)	477, 542, 1920, 1964, 2991, 3974
BmrFI	CCNGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3695, 3831
BoxI	GACNNNNGTC	2 cut(s)	1499, 3714
BpiI	GAAGAC	4 cut(s)	720, 1196, 1518, 4099
BplI	GAGNNNNNCTC	2 cut(s)	2870, 2902
BpmI	CTGGAG	2 cut(s)	1428, 2696
Bpu10I	CCTNAGC	1 cut(s)	1354
Bpu1102I	GCTNAGC	1 cut(s)	3411
BpuEI	CTTGAG	2 cut(s)	739, 3643
Bsa29I	ATCGAT	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	2417
BsaBI	GATNNNNATC	1 cut(s)	3052
BsaI	GGTCTC	1 cut(s)	1746
BsaJI	CCNNGG	8 cut(s)	1263, 1535, 2445, 2468, 2843, 3693, 3782, 3829
BsaWI	WCCGGW	1 cut(s)	1498
BsaXI	ACNNNNNCTCC	6 cut(s)	1832, 1862, 2744, 2774, 4077, 4107
Bse118I	RCCGGY	1 cut(s)	1498
Bse1I	ACTGG	7 cut(s)	542, 1051, 1411, 1459, 2567, 2713, 3840
Bse21I	CCTNAGG	1 cut(s)	2280
Bse3DI	GCAATG	1 cut(s)	1592
Bse8I	GATNNNNATC	1 cut(s)	3052
BseBI	CCWGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3695, 3831
BseCI	ATCGAT	1 cut(s)	654
BseDI	CCNNGG	8 cut(s)	1263, 1535, 2445, 2468, 2843, 3693, 3782, 3829
BseJI	GATNNNNATC	1 cut(s)	3052
BseMI	GCAATG	1 cut(s)	1592
BseNI	ACTGG	7 cut(s)	542, 1051, 1411, 1459, 2567, 2713, 3840
BseRI	GAGGAG	2 cut(s)	1853, 2765
BseSI	GKGCMC	4 cut(s)	1559, 1632, 3543, 3693
BsgI	GTGCAG	5 cut(s)	986, 1266, 1383, 3499, 4063
BshNI	GGYRCC	1 cut(s)	475
BshTI	ACCGGT	1 cut(s)	1498
BshVI	ATCGAT	1 cut(s)	654
BsiHKAI	GWGCWC	6 cut(s)	12, 1559, 1632, 1906, 2202, 3543
BsiSI	CCGG	2 cut(s)	1499, 1938
BslFI	GGGAC	2 cut(s)	1552, 2261
BsmAI	GTCTC	8 cut(s)	800, 989, 1059, 1644, 1746, 2368, 3055, 3510
BsmBI	CGTCTC	2 cut(s)	1644, 3510
BsmFI	GGGAC	2 cut(s)	1552, 2261
BsmI	GAATGC	5 cut(s)	768, 985, 1069, 2080, 4034
Bso31I	GGTCTC	1 cut(s)	1746
Bsp1286I	GDGCHC	7 cut(s)	12, 1559, 1632, 1906, 2202, 3543, 3693
Bsp1720I	GCTNAGC	1 cut(s)	3411
Bsp19I	CCATGG	1 cut(s)	2445
BspACI	CCGC	3 cut(s)	161, 2965, 3966
BspDI	ATCGAT	1 cut(s)	654
BspHI	TCATGA	3 cut(s)	208, 466, 571
BspLI	GGNNCC	6 cut(s)	477, 542, 1920, 1964, 2991, 3974
BspMAI	CTGCAG	3 cut(s)	1874, 3366, 3422
BspMI	ACCTGC	5 cut(s)	115, 2913, 3734, 3960, 4133
BspPI	GGATC	5 cut(s)	1681, 1913, 1926, 3119, 3557
BspQI	GCTCTTC	1 cut(s)	1759
BspT107I	GGYRCC	1 cut(s)	475
BspTI	CTTAAG	1 cut(s)	1823
BspTNI	GGTCTC	1 cut(s)	1746
BsrDI	GCAATG	1 cut(s)	1592
BsrFI	RCCGGY	1 cut(s)	1498
BsrI	ACTGG	7 cut(s)	542, 1051, 1411, 1459, 2567, 2713, 3840
BssAI	RCCGGY	1 cut(s)	1498
BssECI	CCNNGG	8 cut(s)	1263, 1535, 2445, 2468, 2843, 3693, 3782, 3829
BssT1I	CCWWGG	4 cut(s)	2445, 2468, 2843, 3782
Bst2UI	CCWGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3695, 3831
Bst6I	CTCTTC	6 cut(s)	1062, 1214, 1759, 2007, 3014, 3735
BstAFI	CTTAAG	1 cut(s)	1823
BstAPI	GCANNNNNTGC	2 cut(s)	2206, 2520
BstBAI	YACGTR	1 cut(s)	2417
BstC8I	GCNNGC	5 cut(s)	510, 2114, 2705, 3325, 3334
BstDSI	CCRYGG	1 cut(s)	2445
BstENI	CCTNNNNNAGG	3 cut(s)	174, 3019, 3362
BstH2I	RGCGCY	1 cut(s)	993
BstHHI	GCGC	3 cut(s)	527, 992, 4224
BstMAI	GTCTC	8 cut(s)	800, 989, 1059, 1644, 1746, 2368, 3055, 3510
BstNI	CCWGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3695, 3831
BstNSI	RCATGY	8 cut(s)	637, 1259, 2616, 2666, 2707, 2768, 3885, 3900
BstPAI	GACNNNNGTC	2 cut(s)	1499, 3714
BstSCI	CCNGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3693, 3829
BstSFI	CTRYAG	7 cut(s)	345, 941, 985, 1293, 1870, 3362, 3418
BstSLI	GKGCMC	4 cut(s)	1559, 1632, 3543, 3693
BstV2I	GAAGAC	4 cut(s)	720, 1196, 1518, 4099
BstX2I	RGATCY	4 cut(s)	1673, 1918, 2170, 3562
BstXI	CCANNNNNNTGG	3 cut(s)	2552, 3304, 3767
BstYI	RGATCY	4 cut(s)	1673, 1918, 2170, 3562
Bsu15I	ATCGAT	1 cut(s)	654
Bsu36I	CCTNAGG	1 cut(s)	2280
BsuI	GTATCC	3 cut(s)	1681, 3021, 3832
BsuTUI	ATCGAT	1 cut(s)	654
BtgI	CCRYGG	1 cut(s)	2445
BtrI	CACGTC	2 cut(s)	731, 1848
BtsI	GCAGTG	6 cut(s)	400, 1557, 2368, 3178, 3216, 3427
BveI	ACCTGC	5 cut(s)	115, 2913, 3734, 3960, 4133
Cac8I	GCNNGC	5 cut(s)	510, 2114, 2705, 3325, 3334
CaiI	CAGNNNCTG	1 cut(s)	2873
CciI	TCATGA	3 cut(s)	208, 466, 571
CfoI	GCGC	3 cut(s)	527, 992, 4224
Cfr10I	RCCGGY	1 cut(s)	1498
Cfr13I	GGNCC	8 cut(s)	167, 540, 648, 1224, 2796, 2990, 3012, 3294
ClaI	ATCGAT	1 cut(s)	654
CseI	GACGC	1 cut(s)	3144
Csp6I	GTAC	4 cut(s)	135, 2777, 3531, 4180
CspAI	ACCGGT	1 cut(s)	1498
CspCI	CAANNNNNGTGG	2 cut(s)	3375, 3410
CviQI	GTAC	4 cut(s)	135, 2777, 3531, 4180
DraI	TTTAAA	1 cut(s)	2248
DraIII	CACNNNGTG	2 cut(s)	188, 2683
DrdI	GACNNNNNNGTC	1 cut(s)	3069
DriI	GACNNNNNGTC	1 cut(s)	1200
DseDI	GACNNNNNNGTC	1 cut(s)	3069
EaeI	YGGCCR	3 cut(s)	1935, 2962, 3676
Eam1104I	CTCTTC	6 cut(s)	1062, 1214, 1759, 2007, 3014, 3735
Eam1105I	GACNNNNNGTC	1 cut(s)	1200
EarI	CTCTTC	6 cut(s)	1062, 1214, 1759, 2007, 3014, 3735
Eco130I	CCWWGG	4 cut(s)	2445, 2468, 2843, 3782
Eco31I	GGTCTC	1 cut(s)	1746
Eco47I	GGWCC	1 cut(s)	648
Eco47III	AGCGCT	1 cut(s)	991
Eco57I	CTGAAG	8 cut(s)	914, 1031, 1794, 2031, 2331, 3422, 3591, 3912
Eco72I	CACGTG	1 cut(s)	2417
Eco81I	CCTNAGG	1 cut(s)	2280
EcoNI	CCTNNNNNAGG	3 cut(s)	174, 3019, 3362
EcoO109I	RGGNCCY	2 cut(s)	167, 2796
EcoRI	GAATTC	2 cut(s)	516, 946
EcoRII	CCWGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3693, 3829
EcoT14I	CCWWGG	4 cut(s)	2445, 2468, 2843, 3782
EcoT22I	ATGCAT	2 cut(s)	2614, 2705
ErhI	CCWWGG	4 cut(s)	2445, 2468, 2843, 3782
Esp3I	CGTCTC	2 cut(s)	1644, 3510
FaqI	GGGAC	2 cut(s)	1552, 2261
FbaI	TGATCA	3 cut(s)	778, 3820, 3901
FblI	GTMKAC	1 cut(s)	3909
FspBI	CTAG	9 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 3075, 3686
FspI	TGCGCA	1 cut(s)	526
GlaI	GCGC	3 cut(s)	526, 991, 4223
GsuI	CTGGAG	2 cut(s)	1428, 2696
HaeII	RGCGCY	1 cut(s)	993
HapII	CCGG	2 cut(s)	1499, 1938
HgaI	GACGC	1 cut(s)	3144
HhaI	GCGC	3 cut(s)	527, 992, 4224
Hin6I	GCGC	3 cut(s)	525, 990, 4222
HinP1I	GCGC	3 cut(s)	525, 990, 4222
HindIII	AAGCTT	3 cut(s)	1229, 2313, 3670
HpaII	CCGG	2 cut(s)	1499, 1938
HphI	GGTGA	4 cut(s)	1622, 3749, 4157, 4199
Hpy166II	GTNNAC	6 cut(s)	1557, 1618, 1630, 2479, 3541, 3910
Hpy8I	GTNNAC	6 cut(s)	1557, 1618, 1630, 2479, 3541, 3910
Hpy99I	CGWCG	4 cut(s)	323, 326, 735, 3713
HpyCH4IV	ACGT	9 cut(s)	324, 730, 1440, 1847, 2122, 2416, 3031, 3289, 4058
HpySE526I	ACGT	9 cut(s)	324, 730, 1440, 1847, 2122, 2416, 3031, 3289, 4058
HspAI	GCGC	3 cut(s)	525, 990, 4222
Ksp22I	TGATCA	3 cut(s)	778, 3820, 3901
LguI	GCTCTTC	1 cut(s)	1759
LmnI	GCTCC	3 cut(s)	15, 1909, 1962
MaeI	CTAG	9 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 3075, 3686
MaeII	ACGT	9 cut(s)	324, 730, 1440, 1847, 2122, 2416, 3031, 3289, 4058
MaeIII	GTNAC	7 cut(s)	860, 1192, 2005, 2732, 2760, 3162, 3596
MfeI	CAATTG	2 cut(s)	3525, 3854
MflI	RGATCY	4 cut(s)	1673, 1918, 2170, 3562
MhlI	GDGCHC	7 cut(s)	12, 1559, 1632, 1906, 2202, 3543, 3693
MlsI	TGGCCA	1 cut(s)	3678
MluNI	TGGCCA	1 cut(s)	3678
MmeI	TCCRAC	2 cut(s)	739, 1906
Mox20I	TGGCCA	1 cut(s)	3678
Mph1103I	ATGCAT	2 cut(s)	2614, 2705
MroXI	GAANNNNTTC	2 cut(s)	619, 4345
MscI	TGGCCA	1 cut(s)	3678
MslI	CAYNNNNRTG	7 cut(s)	1179, 1696, 2193, 2493, 2784, 3762, 4278
Msp20I	TGGCCA	1 cut(s)	3678
MspA1I	CMGCKG	2 cut(s)	2828, 4047
MspCI	CTTAAG	1 cut(s)	1823
MspI	CCGG	2 cut(s)	1499, 1938
MspR9I	CCNGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3695, 3831
MunI	CAATTG	2 cut(s)	3525, 3854
Mva1269I	GAATGC	5 cut(s)	768, 985, 1069, 2080, 4034
MvaI	CCWGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3695, 3831
NcoI	CCATGG	1 cut(s)	2445
NlaIV	GGNNCC	6 cut(s)	477, 542, 1920, 1964, 2991, 3974
NmeAIII	GCCGAG	1 cut(s)	2989
NmuCI	GTSAC	6 cut(s)	1192, 2005, 2732, 2760, 3162, 3596
NsbI	TGCGCA	1 cut(s)	526
NsiI	ATGCAT	2 cut(s)	2614, 2705
NspI	RCATGY	8 cut(s)	637, 1259, 2616, 2666, 2707, 2768, 3885, 3900
OliI	CACNNNNGTG	2 cut(s)	1179, 1696
PaeI	GCATGC	1 cut(s)	2707
PagI	TCATGA	3 cut(s)	208, 466, 571
PaqCI	CACCTGC	1 cut(s)	4133
PciI	ACATGT	2 cut(s)	1255, 2764
PciSI	GCTCTTC	1 cut(s)	1759
PctI	GAATGC	5 cut(s)	768, 985, 1069, 2080, 4034
PdmI	GAANNNNTTC	2 cut(s)	619, 4345
PflMI	CCANNNNNTGG	2 cut(s)	2062, 3783
PfoI	TCCNGGA	1 cut(s)	2667
PinAI	ACCGGT	1 cut(s)	1498
PmaCI	CACGTG	1 cut(s)	2417
PmlI	CACGTG	1 cut(s)	2417
Ppu21I	YACGTR	1 cut(s)	2417
PscI	ACATGT	2 cut(s)	1255, 2764
PshAI	GACNNNNGTC	2 cut(s)	1499, 3714
PshBI	ATTAAT	1 cut(s)	4278
Psp6I	CCWGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3693, 3829
PspCI	CACGTG	1 cut(s)	2417
PspGI	CCWGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3693, 3829
PspN4I	GGNNCC	6 cut(s)	477, 542, 1920, 1964, 2991, 3974
PspPI	GGNCC	8 cut(s)	167, 540, 648, 1224, 2796, 2990, 3012, 3294
PstI	CTGCAG	3 cut(s)	1874, 3366, 3422
PstNI	CAGNNNCTG	1 cut(s)	2873
PsuI	RGATCY	4 cut(s)	1673, 1918, 2170, 3562
PvuII	CAGCTG	2 cut(s)	2828, 4047
RsaI	GTAC	4 cut(s)	136, 2778, 3532, 4181
RsaNI	GTAC	4 cut(s)	135, 2777, 3531, 4180
RseI	CAYNNNNRTG	7 cut(s)	1179, 1696, 2193, 2493, 2784, 3762, 4278
SapI	GCTCTTC	1 cut(s)	1759
Sau96I	GGNCC	8 cut(s)	167, 540, 648, 1224, 2796, 2990, 3012, 3294
ScrFI	CCNGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3695, 3831
SduI	GDGCHC	7 cut(s)	12, 1559, 1632, 1906, 2202, 3543, 3693
SfcI	CTRYAG	7 cut(s)	345, 941, 985, 1293, 1870, 3362, 3418
SinI	GGWCC	1 cut(s)	648
SmiMI	CAYNNNNRTG	7 cut(s)	1179, 1696, 2193, 2493, 2784, 3762, 4278
SmlI	CTYRAG	3 cut(s)	718, 1823, 3622
SmoI	CTYRAG	3 cut(s)	718, 1823, 3622
SpeI	ACTAGT	1 cut(s)	3685
SphI	GCATGC	1 cut(s)	2707
SsiI	CCGC	3 cut(s)	161, 2965, 3966
SspI	AATATT	2 cut(s)	587, 2343
SspMI	CTAG	9 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 3075, 3686
StyD4I	CCNGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3693, 3829
StyI	CCWWGG	4 cut(s)	2445, 2468, 2843, 3782
TaiI	ACGT	9 cut(s)	327, 733, 1443, 1850, 2125, 2419, 3034, 3292, 4061
TaqI	TCGA	8 cut(s)	20, 28, 654, 1330, 1549, 3017, 3918, 4323
TaqII	GACCGA	2 cut(s)	636, 1728
TatI	WGTACW	1 cut(s)	4179
TauI	GCSGC	2 cut(s)	2967, 3969
TseFI	GTSAC	6 cut(s)	1192, 2005, 2732, 2760, 3162, 3596
Tsp45I	GTSAC	6 cut(s)	1192, 2005, 2732, 2760, 3162, 3596
Van91I	CCANNNNNTGG	2 cut(s)	2062, 3783
Vha464I	CTTAAG	1 cut(s)	1823
VneI	GTGCAC	3 cut(s)	1555, 1628, 3539
VpaK11BI	GGWCC	1 cut(s)	648
VspI	ATTAAT	1 cut(s)	4278
XagI	CCTNNNNNAGG	3 cut(s)	174, 3019, 3362
XceI	RCATGY	8 cut(s)	637, 1259, 2616, 2666, 2707, 2768, 3885, 3900
XmiI	GTMKAC	1 cut(s)	3909
XmnI	GAANNNNTTC	2 cut(s)	619, 4345
XspI	CTAG	9 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 3075, 3686
Zsp2I	ATGCAT	2 cut(s)	2614, 2705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.