Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003021

Physical Location & Seq

Genomic Coordinates Reverse (-)

14380632 .. 14391835

Gene Structure 11204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG165100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3657 bp

ATGATTTTGCAGAGCTACATAAATCATAATTGGCTACAGAATTCAAATCATTCTTGGGTGCAGAGGTGTCAGAATGCCTGTAGCGCTGAGACTGTTGAACTACTGAAGGAGGAATTGGTTGAGTCTATTCTCTGGAATGAAGTCCAGTCTCTTCGGAATGCAGCGTTGCAACCTACTTTGGGTTCTGAGTGGAGAACCTGGAAGCATGAAGTTATGAAATGGTTTTCAACCTCTCATCCCATATCTAATGGTGGGGAATTTCCACAGCACAGTAGTGATGCCCCTGTGACCCCAAGTCTTCAAGTTAGCAGGAAGAGGCCCAAGCTTGAAGTTCGCCGTGCAGAGGCACATGTTTCCCAGGTGGAATCTAGGGGTTCAGATGAAGCTATAGCCATTGAAATTGACTCTGAGTTCTTTAATAATCGAGAGGCTGTAAATTCTGCTACATTAGCCTCAGAACCCGATAAAGAAGTAAATATGAAAGATGTTGCTGCACTGACTGGAGATGGTGGTGTTGCTGATAAATGGGATGACGTTGTAGTTGCAACTGGAAATTCTGTGTTTATCCAAAGCAAAGATGTGGAAATGACACCGGTCAATGATGTGGCTGGTATAAAGTCTTCTGTTTCTGGGACTAAAAATCGACAGTGCACTGCTTATATTGAAGCCAAAGGAAGGCAATGTGTGAGATGGGCGAATGATGGTGATGTTTACTGTTGTGTGCACTTGTCGTCTCGTTTCACGGGAAGCTCTACAAAATCAGAGGGATCTCACTCTATGGATACACCAATGTGTGAAGGAACAACTGTTCTTGGAACTAAATGTAAGCATCGGTCTCTTTATGGCTCTTCATTCTGTAAGAAGCATAGACCAAAAACTGAGAGGGAAACAATCATAAATACTCCAGAGAATGGACTTAAGAGAAAGTATGAGGAGAACACGTCTAGTTTAGATACCATGAACTGCAGAGAGATGGTATTGGTGGGAGATGTTGGTGCTCCACTAGAAGTGGATCCTGTTGGAATCATGGCCGGAGATGGCTTTAATGGAAGGGGGAGCCTATTTGAGAAGTCCGAACTTCCTGCCAAAACTAGTAATGTGACTGAAGAGATGCGTTGCATAGGCTCTGGTTTGCAAGATAGCAGCAACCATTGTCTGGAAAGTCCAAAGAGGCATTCATTATATTGTGAAAAACACCTCCCAAGCTGGCTGAAACGTGCTAGAAATGGTAAGAGTAGGATAATATCAAAGGAAGTATTTGTAGATCTTTTGAAGGATTGCCACTCACATGAGCACAAGTTGCATATACATAAAGCGTGTGAGCTTTTTTACAAGCTCTTTAAAAGTATATTATCTTTAAGAAATCCTGTCCCTAAGGATGTTCAGTTTCAGTGGGCTTTATCTGAAGCTTCTAAGAATTTGGTTGTTGGGGAAATATTTACAAAGTTGGTTTGCAGTGAAAAGGAGAGACTAGTAAGACTTTGGGGCTTTAATACTGATGAAGATACACGTGAGGATGTATGTGTTTTGAACTCTGCCATGGAAGAACCAGCTCTGTTGCCTTGGGTTGTGGACGATAACCATGATGATGAAAGAGCCATCAAGTGCAAAATTTGCTCTGAGGAATTTATGGATGACCAAGCACTTGGAACTCACTGGATGGAAAATCATAAAAAGGAAGCTCAATGGCTCTTTAGAGGTTATGCATGTGCTATCTGCCTGGATTCTTTTACTAATAAAAAAGTTTTGGAAACGCATGTCCAGGACAGACACCGTGTGCAATTTGTTGAACAATGCATGCTTCTCCAGTGCATCCCTTGTGGCAGCCACTTTGGGAATAATGAGGAGTTATGGTCACATGTGCTTGTGGTACATCCTGATGATTTCAGGCCCTCAAAAGCTGTTCAACATACTCTGTCAGCTGATGATGGCTCTCCAAGGAAGTTTGAGTTGTGCAATTCAGCTTCTGTGGAGAATACCTCACAAAATTTAGCTAATGTCCGAAAGTTCGTTTGCAGGTTTTGTGGTTTGAAATTTGATTTACTTCCCGATCTTGGCCGCCACCATCAAGCTGCCCACATGGGGCCAAGTTTAGTCAGTTCTCGGCCCTCGAAGAGGGGGATACGTTATTATGCTTATAGATTAAAATCTGGGAGACTTAGCCGTCCTAGATTGAAAAAGAGTTTGGCAGCAGCATCATATAGGATCAGGAACAGAGTAAATGCTACTATAAAGAAACGCATCCAAGCGTCCAAGTCACTTAGCAGTGGAGGAATGGATATACAGAGTCAATCAACTGAGGCAGTGAGTCTTGGTAGGTTAGCAGAATCACATTGTTCAGCAGTAGCAAGGATTTTGTTTTCTGAGATGCAGAAAACAAAACGTAGGCCCAACAACCTGGACATTTTATCTGTTGCTCGCTCTGCTTGCTGCAAGATTAGTCTTGAAGTCCTGCTGCAGGGAAAATATGGAATCTTGCCACAACGCTTGTATCTGAAGGCAGCTAAGCTCTGCAGTGAGCATAACATTAAGGTAAGTTGGCATCAAGAGGGTTTCATTTGTCCTAAAGGGTGCAGGGATTTCAATGCTTTGTTGCCGTCTCCTTTGAGACCTCGTCCAATTGGTACTACGGTGCACAAATCTCAACCTTTATCAGATCCTTCTGAAGAAAAGTGGGAGGTGGATGAGAGTCACTATGTTGTTGGTTCAAATCACTTGAGCCAAAGGTCTTTGCAGAAGGCTCATGTATTATGTGATGATATAAGCTTTGGCCAAGAACTAGTGCCACTGGTCTGTGTAGCCGACGAAGGTCTTTTGGATTCTCTTCCTGCCAATGCAGGTAGTTCTACTCACCAAAATGCTGGACATTCCATGCCTTGGGAGAACTTTACCTATACTGCGAAGCCATTACTTGATCAATCCCCTGGACTGGATACAGAGAGTTTGCAATTGCGTTGTTCCTGCCCACATTCTACATGCTGTCCTGAAGCATGTGATCATGTCTACCTTTTTGATAATGACTATGATGATGCGAAAGACATCTATGGGAAACCCATGTGCGGCAGGTTCCCCTATGATGATAGAGGCCGAATTATTTTGGAGGAAGGCTACCTCGTTTATGAATGCAATCAGATGTGCAGCTGCAATAGAACGTGTCCTAATAGGGTCTTGCAGAATGGAGTAAGAGTGAAATTGGAAGTCTTCAAGACAGAGAAAAAGGGATGGGCAGTCAGGGCAGGTGAAGCAATCCTGCGTGGCACTTTTATTTGCGAGTACATTGGTGAGATTTTAGACGAAAATGAAGCAAACAAGAGGCGCAACAGGTATGACAGAGATGGTTATGGCTATCTTTTTGAAATCAATGCTCATATTAATGATATGAGCAGATTGGTAGAAGGACAGGCACAATATGTAATTGACTCTACAAACTATGGAAATGTTTCACGATTCATCAATCATAGCTGTTCACCAAACCTTATGAATTACCAAGTTCTTGTGGAAAGCATGGATAGTGAACGTGCGCATATCGGTCTATATGCTAATCGTGATATAGCTTTGGGTGAAGAATTAACATATGACTATCAGTATAAACTCCTTCCTGGAGAAGGATGTCTGTGCCATTGTGGAGCTCCCAGATGCCGAGGCCGGCTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0005488 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016278 GO:0016279 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0032259 GO:0032268 GO:0033043 GO:0033044 GO:0034968 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051276 GO:0051570 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:0140110 GO:1900109 GO:1901363 GO:1901564 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SET zf-TRM13_CCCH

Protein Analysis

1218

Amino Acids

137.22

Weight (kDa)

6.92

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3rep	PF18868	570 - 694	5.5e-66	Zinc finger C2H2-type, 3 repeats
Pre-SET	PF05033	954 - 1055	8.4e-11	Pre-SET motif
SET	PF00856	1074 - 1195	6.6e-25	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740
fragaria_vesca	FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350
malus_domestica	MD02G1157000.v1.1 MD15G1271600.v1.1
prunus_persica	Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1
pyrus_communis	pycom02g12410 pycom15g23560
rosa_chinensis	RchiOBHm_Chr2g0103021
rosa_laevigata	RLG00000017201
rosa_multiflora	Rmu_sc0000388.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139990
rosa_rugosa	Rorug02G0111400 Rorug02G0111400 Rorug02G0111500 Rorug02G0111500
rosa_samantha	Rh2AG159700 Rh2BG166200 Rh2CG166400 Rh2DG165100
rosa_wichuraiana	Rw2G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3227
AasI	GACNNNNNNGTC	1 cut(s)	2163
Acc16I	TGCGCA	1 cut(s)	3522
Acc36I	ACCTGC	4 cut(s)	2007, 2828, 3054, 3227
AccB7I	CCANNNNNTGG	3 cut(s)	911, 1156, 2877
AccI	GTMKAC	1 cut(s)	3003
AciI	CCGC	2 cut(s)	2059, 3060
AclWI	GGATC	5 cut(s)	775, 1007, 1020, 2213, 2651
AcoI	YGGCCR	3 cut(s)	1029, 2056, 2770
AcsI	RAATTY	9 cut(s)	40, 257, 436, 553, 1417, 1611, 1625, 1987, 2033
AcuI	CTGAAG	6 cut(s)	125, 1125, 1425, 2516, 2685, 3006
AcvI	CACGTG	1 cut(s)	1511
AdeI	CACNNNGTG	1 cut(s)	1777
AfaI	GTAC	3 cut(s)	1872, 2626, 3275
AfeI	AGCGCT	1 cut(s)	85
AflII	CTTAAG	1 cut(s)	917
AflIII	ACRYGT	5 cut(s)	349, 939, 1508, 1858, 3152
AgeI	ACCGGT	1 cut(s)	592
AhdI	GACNNNNNGTC	1 cut(s)	294
AhlI	ACTAGT	3 cut(s)	1091, 1471, 2779
AjiI	CACGTC	1 cut(s)	942
AjnI	CCWGG	7 cut(s)	197, 357, 1719, 1761, 2397, 2923, 3598
AjuI	GAANNNNNNNTTGG	6 cut(s)	98, 130, 1159, 1191, 2168, 2200
AleI	CACNNNNGTG	2 cut(s)	273, 790
AloI	GAACNNNNNNTCC	2 cut(s)	792, 824
Alw21I	GWGCWC	6 cut(s)	653, 726, 1000, 1296, 2637, 3631
Alw26I	GTCTC	8 cut(s)	83, 153, 738, 840, 1462, 2149, 2602, 2604
Alw44I	GTGCAC	3 cut(s)	649, 722, 2633
AlwI	GGATC	5 cut(s)	775, 1007, 1020, 2213, 2651
AlwNI	CAGNNNCTG	1 cut(s)	1967
Aor51HI	AGCGCT	1 cut(s)	85
ApaLI	GTGCAC	3 cut(s)	649, 722, 2633
ApoI	RAATTY	9 cut(s)	40, 257, 436, 553, 1417, 1611, 1625, 1987, 2033
AseI	ATTAAT	1 cut(s)	3372
AsiGI	ACCGGT	1 cut(s)	592
Asp700I	GAANNNNTTC	1 cut(s)	3439
AspLEI	GCGC	3 cut(s)	86, 3318, 3523
AspS9I	GGNCC	5 cut(s)	318, 1890, 2084, 2106, 2388
AsuHPI	GGTGA	6 cut(s)	716, 2843, 3251, 3293, 3459, 3572
AxyI	CCTNAGG	1 cut(s)	1374
BaeGI	GKGCMC	3 cut(s)	653, 726, 2637
BaeI	ACNNNNGTAYC	4 cut(s)	2474, 2507, 2616, 2649
BalI	TGGCCA	1 cut(s)	2772
BamHI	GGATCC	1 cut(s)	1012
BanII	GRGCYC	1 cut(s)	3631
BarI	GAAGNNNNNNTAC	2 cut(s)	604, 636
BbrPI	CACGTG	1 cut(s)	1511
BbsI	GAAGAC	3 cut(s)	290, 612, 3193
Bbv12I	GWGCWC	6 cut(s)	653, 726, 1000, 1296, 2637, 3631
BceAI	ACGGC	3 cut(s)	321, 2148, 2581
BcgI	CGANNNNNNTGC	2 cut(s)	1064, 1098
BciT130I	CCWGG	7 cut(s)	199, 359, 1721, 1763, 2399, 2925, 3600
BciVI	GTATCC	3 cut(s)	775, 2115, 2926
BclI	TGATCA	2 cut(s)	2914, 2995
BcoDI	GTCTC	8 cut(s)	83, 153, 738, 840, 1462, 2149, 2602, 2604
BcuI	ACTAGT	3 cut(s)	1091, 1471, 2779
BfaI	CTAG	8 cut(s)	369, 945, 1004, 1092, 1221, 1472, 2169, 2780
BfmI	CTRYAG	6 cut(s)	35, 79, 387, 964, 2456, 2512
BfoI	RGCGCY	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	917
BfuAI	ACCTGC	4 cut(s)	2007, 2828, 3054, 3227
BfuI	GTATCC	3 cut(s)	775, 2115, 2926
BglII	AGATCT	1 cut(s)	1264
BlpI	GCTNAGC	1 cut(s)	2505
Bme1390I	CCNGG	7 cut(s)	199, 359, 1721, 1763, 2399, 2925, 3600
BmeRI	GACNNNNNGTC	1 cut(s)	294
BmgBI	CACGTC	1 cut(s)	942
BmgT120I	GGNCC	5 cut(s)	318, 1890, 2084, 2106, 2388
BmiI	GGNNCC	4 cut(s)	1014, 1058, 2085, 3068
BmrFI	CCNGG	7 cut(s)	199, 359, 1721, 1763, 2399, 2925, 3600
BoxI	GACNNNNGTC	2 cut(s)	593, 2808
BpiI	GAAGAC	3 cut(s)	290, 612, 3193
BplI	GAGNNNNNCTC	3 cut(s)	1964, 1996, 3633
BpmI	CTGGAG	4 cut(s)	522, 888, 1790, 3621
Bpu1102I	GCTNAGC	1 cut(s)	2505
BpuEI	CTTGAG	1 cut(s)	2737
BsaAI	YACGTR	1 cut(s)	1511
BsaBI	GATNNNNATC	1 cut(s)	2146
BsaI	GGTCTC	2 cut(s)	840, 2602
BsaJI	CCNNGG	7 cut(s)	357, 1539, 1562, 1937, 2876, 2923, 3640
BsaWI	WCCGGW	1 cut(s)	592
BsaXI	ACNNNNNCTCC	6 cut(s)	926, 956, 1838, 1868, 3171, 3201
Bse118I	RCCGGY	2 cut(s)	592, 3645
Bse1I	ACTGG	7 cut(s)	145, 505, 553, 1661, 1807, 2793, 2934
Bse21I	CCTNAGG	1 cut(s)	1374
Bse3DI	GCAATG	1 cut(s)	686
Bse8I	GATNNNNATC	1 cut(s)	2146
BseBI	CCWGG	7 cut(s)	199, 359, 1721, 1763, 2399, 2925, 3600
BseDI	CCNNGG	7 cut(s)	357, 1539, 1562, 1937, 2876, 2923, 3640
BseJI	GATNNNNATC	1 cut(s)	2146
BseMI	GCAATG	1 cut(s)	686
BseMII	CTCAG	8 cut(s)	78, 177, 399, 468, 870, 1611, 2289, 2355
BseNI	ACTGG	7 cut(s)	145, 505, 553, 1661, 1807, 2793, 2934
BseRI	GAGGAG	2 cut(s)	947, 1859
BseSI	GKGCMC	3 cut(s)	653, 726, 2637
BsgI	GTGCAG	5 cut(s)	80, 360, 477, 2593, 3157
BshTI	ACCGGT	1 cut(s)	592
BsiHKAI	GWGCWC	6 cut(s)	653, 726, 1000, 1296, 2637, 3631
BsiSI	CCGG	3 cut(s)	593, 1032, 3646
BslFI	GGGAC	2 cut(s)	646, 1355
BsmAI	GTCTC	8 cut(s)	83, 153, 738, 840, 1462, 2149, 2602, 2604
BsmBI	CGTCTC	2 cut(s)	738, 2604
BsmFI	GGGAC	2 cut(s)	646, 1355
BsmI	GAATGC	4 cut(s)	79, 163, 1174, 3128
Bso31I	GGTCTC	2 cut(s)	840, 2602
Bsp1286I	GDGCHC	6 cut(s)	653, 726, 1000, 1296, 2637, 3631
Bsp143I	GATC	8 cut(s)	767, 1012, 1264, 2050, 2205, 2656, 2914, 2995
Bsp1720I	GCTNAGC	1 cut(s)	2505
Bsp19I	CCATGG	1 cut(s)	1539
BspACI	CCGC	2 cut(s)	2059, 3060
BspCNI	CTCAG	8 cut(s)	79, 178, 400, 467, 871, 1612, 2290, 2356
BspLI	GGNNCC	4 cut(s)	1014, 1058, 2085, 3068
BspMAI	CTGCAG	3 cut(s)	968, 2460, 2516
BspMI	ACCTGC	4 cut(s)	2007, 2828, 3054, 3227
BspPI	GGATC	5 cut(s)	775, 1007, 1020, 2213, 2651
BspQI	GCTCTTC	1 cut(s)	853
BspTI	CTTAAG	1 cut(s)	917
BspTNI	GGTCTC	2 cut(s)	840, 2602
BsrDI	GCAATG	1 cut(s)	686
BsrFI	RCCGGY	2 cut(s)	592, 3645
BsrI	ACTGG	7 cut(s)	145, 505, 553, 1661, 1807, 2793, 2934
BssAI	RCCGGY	2 cut(s)	592, 3645
BssECI	CCNNGG	7 cut(s)	357, 1539, 1562, 1937, 2876, 2923, 3640
BssMI	GATC	8 cut(s)	767, 1012, 1264, 2050, 2205, 2656, 2914, 2995
BssT1I	CCWWGG	4 cut(s)	1539, 1562, 1937, 2876
Bst2UI	CCWGG	7 cut(s)	199, 359, 1721, 1763, 2399, 2925, 3600
Bst4CI	ACNGT	7 cut(s)	94, 272, 648, 716, 808, 1775, 2632
Bst6I	CTCTTC	6 cut(s)	156, 308, 853, 1101, 2108, 2829
BstAFI	CTTAAG	1 cut(s)	917
BstAPI	GCANNNNNTGC	2 cut(s)	1300, 1614
BstBAI	YACGTR	1 cut(s)	1511
BstC8I	GCNNGC	5 cut(s)	1208, 1799, 2419, 2428, 3647
BstDSI	CCRYGG	1 cut(s)	1539
BstENI	CCTNNNNNAGG	3 cut(s)	2113, 2456, 3603
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	3 cut(s)	86, 3318, 3523
BstKTI	GATC	8 cut(s)	770, 1015, 1267, 2053, 2208, 2659, 2917, 2998
BstMAI	GTCTC	8 cut(s)	83, 153, 738, 840, 1462, 2149, 2602, 2604
BstMBI	GATC	8 cut(s)	767, 1012, 1264, 2050, 2205, 2656, 2914, 2995
BstMWI	GCNNNNNNNGC	8 cut(s)	83, 449, 1300, 1614, 2423, 2427, 3233, 3242
BstNI	CCWGG	7 cut(s)	199, 359, 1721, 1763, 2399, 2925, 3600
BstNSI	RCATGY	7 cut(s)	353, 1710, 1760, 1801, 1862, 2979, 2994
BstPAI	GACNNNNGTC	2 cut(s)	593, 2808
BstSCI	CCNGG	7 cut(s)	197, 357, 1719, 1761, 2397, 2923, 3598
BstSFI	CTRYAG	6 cut(s)	35, 79, 387, 964, 2456, 2512
BstSLI	GKGCMC	3 cut(s)	653, 726, 2637
BstV2I	GAAGAC	3 cut(s)	290, 612, 3193
BstX2I	RGATCY	4 cut(s)	767, 1012, 1264, 2656
BstXI	CCANNNNNNTGG	3 cut(s)	1646, 2398, 2861
BstYI	RGATCY	4 cut(s)	767, 1012, 1264, 2656
Bsu36I	CCTNAGG	1 cut(s)	1374
BsuI	GTATCC	3 cut(s)	775, 2115, 2926
BtgI	CCRYGG	1 cut(s)	1539
BtrI	CACGTC	1 cut(s)	942
BtsI	GCAGTG	5 cut(s)	651, 1462, 2272, 2310, 2521
BveI	ACCTGC	4 cut(s)	2007, 2828, 3054, 3227
Cac8I	GCNNGC	5 cut(s)	1208, 1799, 2419, 2428, 3647
CaiI	CAGNNNCTG	1 cut(s)	1967
CfoI	GCGC	3 cut(s)	86, 3318, 3523
Cfr10I	RCCGGY	2 cut(s)	592, 3645
Cfr13I	GGNCC	5 cut(s)	318, 1890, 2084, 2106, 2388
CseI	GACGC	1 cut(s)	2238
Csp6I	GTAC	3 cut(s)	1871, 2625, 3274
CspAI	ACCGGT	1 cut(s)	592
CspCI	CAANNNNNGTGG	2 cut(s)	2469, 2504
CviQI	GTAC	3 cut(s)	1871, 2625, 3274
DpnI	GATC	8 cut(s)	769, 1014, 1266, 2052, 2207, 2658, 2916, 2997
DpnII	GATC	8 cut(s)	767, 1012, 1264, 2050, 2205, 2656, 2914, 2995
DraI	TTTAAA	1 cut(s)	1342
DraIII	CACNNNGTG	1 cut(s)	1777
DrdI	GACNNNNNNGTC	1 cut(s)	2163
DriI	GACNNNNNGTC	1 cut(s)	294
DseDI	GACNNNNNNGTC	1 cut(s)	2163
EaeI	YGGCCR	3 cut(s)	1029, 2056, 2770
Eam1104I	CTCTTC	6 cut(s)	156, 308, 853, 1101, 2108, 2829
Eam1105I	GACNNNNNGTC	1 cut(s)	294
EarI	CTCTTC	6 cut(s)	156, 308, 853, 1101, 2108, 2829
Ecl136II	GAGCTC	1 cut(s)	3629
Eco130I	CCWWGG	4 cut(s)	1539, 1562, 1937, 2876
Eco24I	GRGCYC	1 cut(s)	3631
Eco31I	GGTCTC	2 cut(s)	840, 2602
Eco47III	AGCGCT	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	3629
Eco57I	CTGAAG	6 cut(s)	125, 1125, 1425, 2516, 2685, 3006
Eco72I	CACGTG	1 cut(s)	1511
Eco81I	CCTNAGG	1 cut(s)	1374
EcoICRI	GAGCTC	1 cut(s)	3629
EcoNI	CCTNNNNNAGG	3 cut(s)	2113, 2456, 3603
EcoO109I	RGGNCCY	1 cut(s)	1890
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	7 cut(s)	197, 357, 1719, 1761, 2397, 2923, 3598
EcoT14I	CCWWGG	4 cut(s)	1539, 1562, 1937, 2876
EcoT22I	ATGCAT	2 cut(s)	1708, 1799
EcoT38I	GRGCYC	1 cut(s)	3631
ErhI	CCWWGG	4 cut(s)	1539, 1562, 1937, 2876
Esp3I	CGTCTC	2 cut(s)	738, 2604
FaqI	GGGAC	2 cut(s)	646, 1355
FauNDI	CATATG	1 cut(s)	3574
FbaI	TGATCA	2 cut(s)	2914, 2995
FblI	GTMKAC	1 cut(s)	3003
FriOI	GRGCYC	1 cut(s)	3631
FspAI	RTGCGCAY	1 cut(s)	3522
FspBI	CTAG	8 cut(s)	369, 945, 1004, 1092, 1221, 1472, 2169, 2780
FspI	TGCGCA	1 cut(s)	3522
GlaI	GCGC	3 cut(s)	85, 3317, 3522
GsuI	CTGGAG	4 cut(s)	522, 888, 1790, 3621
HaeII	RGCGCY	1 cut(s)	87
HapII	CCGG	3 cut(s)	593, 1032, 3646
HgaI	GACGC	1 cut(s)	2238
HhaI	GCGC	3 cut(s)	86, 3318, 3523
Hin6I	GCGC	3 cut(s)	84, 3316, 3521
HinP1I	GCGC	3 cut(s)	84, 3316, 3521
HindIII	AAGCTT	3 cut(s)	323, 1407, 2764
HpaII	CCGG	3 cut(s)	593, 1032, 3646
HphI	GGTGA	6 cut(s)	716, 2843, 3251, 3293, 3459, 3572
Hpy166II	GTNNAC	8 cut(s)	651, 712, 724, 1573, 2635, 3004, 3467, 3515
Hpy8I	GTNNAC	8 cut(s)	651, 712, 724, 1573, 2635, 3004, 3467, 3515
Hpy99I	CGWCG	1 cut(s)	2807
HpyCH4III	ACNGT	7 cut(s)	94, 272, 648, 716, 808, 1775, 2632
HpyCH4IV	ACGT	8 cut(s)	534, 941, 1216, 1510, 2125, 2383, 3152, 3517
HpyF10VI	GCNNNNNNNGC	8 cut(s)	83, 449, 1300, 1614, 2423, 2427, 3233, 3242
HpySE526I	ACGT	8 cut(s)	534, 941, 1216, 1510, 2125, 2383, 3152, 3517
HspAI	GCGC	3 cut(s)	84, 3316, 3521
KroI	GCCGGC	1 cut(s)	3645
KroNI	GCCGGC	1 cut(s)	3647
Ksp22I	TGATCA	2 cut(s)	2914, 2995
Kzo9I	GATC	8 cut(s)	767, 1012, 1264, 2050, 2205, 2656, 2914, 2995
LguI	GCTCTTC	1 cut(s)	853
LmnI	GCTCC	4 cut(s)	1003, 1056, 3626, 3634
MaeI	CTAG	8 cut(s)	369, 945, 1004, 1092, 1221, 1472, 2169, 2780
MaeII	ACGT	8 cut(s)	534, 941, 1216, 1510, 2125, 2383, 3152, 3517
MaeIII	GTNAC	5 cut(s)	286, 1099, 1854, 2256, 2690
MalI	GATC	8 cut(s)	769, 1014, 1266, 2052, 2207, 2658, 2916, 2997
MboI	GATC	8 cut(s)	767, 1012, 1264, 2050, 2205, 2656, 2914, 2995
MfeI	CAATTG	2 cut(s)	2619, 2948
MflI	RGATCY	4 cut(s)	767, 1012, 1264, 2656
MhlI	GDGCHC	6 cut(s)	653, 726, 1000, 1296, 2637, 3631
MlsI	TGGCCA	1 cut(s)	2772
MluNI	TGGCCA	1 cut(s)	2772
MlyI	GAGTC	6 cut(s)	131, 398, 2296, 2317, 2698, 3413
MmeI	TCCRAC	1 cut(s)	1000
Mox20I	TGGCCA	1 cut(s)	2772
Mph1103I	ATGCAT	2 cut(s)	1708, 1799
MroNI	GCCGGC	1 cut(s)	3645
MroXI	GAANNNNTTC	1 cut(s)	3439
MscI	TGGCCA	1 cut(s)	2772
MslI	CAYNNNNRTG	7 cut(s)	273, 790, 1287, 1587, 1878, 2856, 3372
Msp20I	TGGCCA	1 cut(s)	2772
MspA1I	CMGCKG	2 cut(s)	1922, 3141
MspCI	CTTAAG	1 cut(s)	917
MspI	CCGG	3 cut(s)	593, 1032, 3646
MspR9I	CCNGG	7 cut(s)	199, 359, 1721, 1763, 2399, 2925, 3600
MunI	CAATTG	2 cut(s)	2619, 2948
Mva1269I	GAATGC	4 cut(s)	79, 163, 1174, 3128
MvaI	CCWGG	7 cut(s)	199, 359, 1721, 1763, 2399, 2925, 3600
MwoI	GCNNNNNNNGC	8 cut(s)	83, 449, 1300, 1614, 2423, 2427, 3233, 3242
NaeI	GCCGGC	1 cut(s)	3647
NcoI	CCATGG	1 cut(s)	1539
NdeI	CATATG	1 cut(s)	3574
NdeII	GATC	8 cut(s)	767, 1012, 1264, 2050, 2205, 2656, 2914, 2995
NgoMIV	GCCGGC	1 cut(s)	3645
NlaIV	GGNNCC	4 cut(s)	1014, 1058, 2085, 3068
NmeAIII	GCCGAG	1 cut(s)	2083
NmuCI	GTSAC	5 cut(s)	286, 1099, 1854, 2256, 2690
NsbI	TGCGCA	1 cut(s)	3522
NsiI	ATGCAT	2 cut(s)	1708, 1799
NspI	RCATGY	7 cut(s)	353, 1710, 1760, 1801, 1862, 2979, 2994
OliI	CACNNNNGTG	2 cut(s)	273, 790
PaeI	GCATGC	1 cut(s)	1801
PaqCI	CACCTGC	1 cut(s)	3227
PciI	ACATGT	2 cut(s)	349, 1858
PciSI	GCTCTTC	1 cut(s)	853
PctI	GAATGC	4 cut(s)	79, 163, 1174, 3128
PdiI	GCCGGC	1 cut(s)	3647
PdmI	GAANNNNTTC	1 cut(s)	3439
PfeI	GAWTC	7 cut(s)	365, 1023, 1724, 2327, 2472, 2819, 3447
PflFI	GACNNNGTC	1 cut(s)	2613
PflMI	CCANNNNNTGG	3 cut(s)	911, 1156, 2877
PfoI	TCCNGGA	2 cut(s)	1761, 3598
PinAI	ACCGGT	1 cut(s)	592
PleI	GAGTC	6 cut(s)	130, 398, 2295, 2316, 2697, 3413
PmaCI	CACGTG	1 cut(s)	1511
PmlI	CACGTG	1 cut(s)	1511
PpsI	GAGTC	6 cut(s)	130, 398, 2295, 2316, 2697, 3413
Ppu21I	YACGTR	1 cut(s)	1511
PscI	ACATGT	2 cut(s)	349, 1858
PshAI	GACNNNNGTC	2 cut(s)	593, 2808
PshBI	ATTAAT	1 cut(s)	3372
Psp124BI	GAGCTC	1 cut(s)	3631
Psp6I	CCWGG	7 cut(s)	197, 357, 1719, 1761, 2397, 2923, 3598
PspCI	CACGTG	1 cut(s)	1511
PspGI	CCWGG	7 cut(s)	197, 357, 1719, 1761, 2397, 2923, 3598
PspN4I	GGNNCC	4 cut(s)	1014, 1058, 2085, 3068
PspPI	GGNCC	5 cut(s)	318, 1890, 2084, 2106, 2388
PstI	CTGCAG	3 cut(s)	968, 2460, 2516
PstNI	CAGNNNCTG	1 cut(s)	1967
PsuI	RGATCY	4 cut(s)	767, 1012, 1264, 2656
PsyI	GACNNNGTC	1 cut(s)	2613
PvuII	CAGCTG	2 cut(s)	1922, 3141
RsaI	GTAC	3 cut(s)	1872, 2626, 3275
RsaNI	GTAC	3 cut(s)	1871, 2625, 3274
RseI	CAYNNNNRTG	7 cut(s)	273, 790, 1287, 1587, 1878, 2856, 3372
SacI	GAGCTC	1 cut(s)	3631
SapI	GCTCTTC	1 cut(s)	853
Sau3AI	GATC	8 cut(s)	767, 1012, 1264, 2050, 2205, 2656, 2914, 2995
Sau96I	GGNCC	5 cut(s)	318, 1890, 2084, 2106, 2388
SchI	GAGTC	6 cut(s)	131, 398, 2296, 2317, 2698, 3413
ScrFI	CCNGG	7 cut(s)	199, 359, 1721, 1763, 2399, 2925, 3600
SduI	GDGCHC	6 cut(s)	653, 726, 1000, 1296, 2637, 3631
SfcI	CTRYAG	6 cut(s)	35, 79, 387, 964, 2456, 2512
SmiMI	CAYNNNNRTG	7 cut(s)	273, 790, 1287, 1587, 1878, 2856, 3372
SmlI	CTYRAG	2 cut(s)	917, 2716
SmoI	CTYRAG	2 cut(s)	917, 2716
SpeI	ACTAGT	3 cut(s)	1091, 1471, 2779
SphI	GCATGC	1 cut(s)	1801
SsiI	CCGC	2 cut(s)	2059, 3060
SspI	AATATT	1 cut(s)	1437
SspMI	CTAG	8 cut(s)	369, 945, 1004, 1092, 1221, 1472, 2169, 2780
SstI	GAGCTC	1 cut(s)	3631
StyD4I	CCNGG	7 cut(s)	197, 357, 1719, 1761, 2397, 2923, 3598
StyI	CCWWGG	4 cut(s)	1539, 1562, 1937, 2876
TaaI	ACNGT	7 cut(s)	94, 272, 648, 716, 808, 1775, 2632
TaiI	ACGT	8 cut(s)	537, 944, 1219, 1513, 2128, 2386, 3155, 3520
TaqI	TCGA	3 cut(s)	424, 643, 2111
TaqII	GACCGA	2 cut(s)	822, 3518
TatI	WGTACW	1 cut(s)	3273
TauI	GCSGC	2 cut(s)	2061, 3063
TfiI	GAWTC	7 cut(s)	365, 1023, 1724, 2327, 2472, 2819, 3447
TseFI	GTSAC	5 cut(s)	286, 1099, 1854, 2256, 2690
Tsp45I	GTSAC	5 cut(s)	286, 1099, 1854, 2256, 2690
Tth111I	GACNNNGTC	1 cut(s)	2613
Van91I	CCANNNNNTGG	3 cut(s)	911, 1156, 2877
Vha464I	CTTAAG	1 cut(s)	917
VneI	GTGCAC	3 cut(s)	649, 722, 2633
VspI	ATTAAT	1 cut(s)	3372
XagI	CCTNNNNNAGG	3 cut(s)	2113, 2456, 3603
XapI	RAATTY	9 cut(s)	40, 257, 436, 553, 1417, 1611, 1625, 1987, 2033
XceI	RCATGY	7 cut(s)	353, 1710, 1760, 1801, 1862, 2979, 2994
XmiI	GTMKAC	1 cut(s)	3003
XmnI	GAANNNNTTC	1 cut(s)	3439
XspI	CTAG	8 cut(s)	369, 945, 1004, 1092, 1221, 1472, 2169, 2780
Zsp2I	ATGCAT	2 cut(s)	1708, 1799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.