Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003021

Physical Location & Seq

Genomic Coordinates Forward (+)

78243708 .. 78254734

Gene Structure 11027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00139990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4440 bp

ATGGAAGTGCTCCCTTGTTCGAGCGTTCGATGTGTTGAAAAATCTGACTGCCCTCAACAGAGTTCAGGAACAACTCCTGTGAATGGAGAATCTAACTGCCTTGAACCTGCAAAGCAAGTGCAAGTAATAGATCGTACGGTAGAAGGCTTATTGCCAAATGCGGAAGGGCCTCAATTAGGAACACAAGGTGAAGTTAAAGGGGCAGTTCATGAATTGCATACCTCAGAAGGATGTCGGAATGGAGCTTCAAGTCTTGATTGTCAAGTGGAGAGCCAAAAGTCATCTAGTGGTTCGCATGGTTTTGAATCTTTTGATGACGACGACGTAAATGCACAGAATTACTCTACAGAACCTTCCTTAATCTCTGACAATAGTGGTCTGAAATTAGATAGCAGTGAAAATGGACTTCCATACAACAGTAGGGAAGGAGAGTCATCTCATTCAGACTCCACATGGCTAGAATGTCATGAATCGGTGCCACTGTGGGTCAAGTGGAGAGGAAAGTGGCAGGCAGGAATTCGTTGCGCAAGAGCTGACTGGCCCCTATCAACTTTGAGAGCAAAACCAACTCATGACAGGAAGAAATATTTTGTGATATTTTTTCCCCACACAAGAAATTATTCTTGGGCAGACATGCTACTTGTTCGGTCCATCGATGAAATTCCACAGCCTATTGCATATAAAACACATAATGCTGGTTTGAGAATGGTAGAAGACTTGAGTGTTGCACGTCGGTTTATCATGCAAAAGTTAGCTGTTGGAATGCTGAATATAGTTGATCAATTTCATACTGAGGCTTTAATAGAGACTGCTCGTAATGTGGTGGTCTGGAAGGAGTTTGCTATGGAGGCTTCTCGCTGTAACGGTTATTCTGATCTGGGAAAGATGCTTCTGAAGCTGCAAAGTATGATTTCGCAGAGCTACATAAATCATAATTGGCTACAGAATTCAAATCATTCTTGGGTGCAGCGGTGTCAGAATGCCTGTAGCGCTGAAACTGTTGAACTACTGAAGGAGGAATTGGTCGAGTCTATTCTCTGGAATGAAGTCCAGTCTCTCCGGAATGCAGTGTTGCAACCTACTTTGGGTTCTGAGTGGAGAACCTGGAAGCATGAAGTTATGAAATGGTTTTCAACCTCTCATCCCATATCTAATGGTGGGGAATTTCCACAGCACAGTAGTGATGCCCCTGTGACCCCAAGTCTTCAAGTTAGCAGGAAGAGGCCCAAGCTTGAAGTTCGCCGTGCAGAGGCACATGTTTCCCAGGTGGAATCTAGGGGTTCAGATGAAGCTATAGCCATTGAAATTGACTCTGAGTTCTTTAATAATCGAGAGGCTGTAAATTCTGCTACATTAGCCTCAGAACCCGATAAAGAAGTAAATATGAAAGATGTTGCTGCACTGACTGGAGATGGTGGTGTTGCTGATAAATGGGATGACGTTGTAGTTGCAACTGGAAATTCTGTGTTTATCCAAAGCAAAGATGTGGAAATGACACCGGTCAATGATGTGGCTGGTATAAAGTCTTCTGTTCCTGGGACTAAAAATCGACAGTGCATTGCTTATATTGAAGCCAAAGGAAGGCAATGTGTGAGATGGGCGAATGATGGTGATGTTTACTGTTGTGTGCACTTGTCGTCTCGTTTCACGGGAAGCTCTACAAAATCAGAGGGATCTCACTCTATGGATACACCAATGTGTGAAGGAACAACTGTTCTTGGAACTAAATGTAAGCATCGGTCTCTTTATGGCTCTTCATTCTGTAAGAAGCATAGACCAAAAACTGAGAGGGAAACAATCATAAATACTCCAGAGAATGGACTTAAGAGAAAGTATGAGGAGAACACGTCTAGTTTAGATACCATGAACTGCAGAGAGATGGTATTGGTGGGTGATGTTGGTGCTCCACTAGAAGTGGATCCTGTTGGAATCATGGCTGGCGATGGCTTTAATGGAAGGGGGAGCCTATTTGAGAAGTCCGAACTTCCTGCCAAAACTAGTAATGTGACTGAAGAGACGCGTTGCATAGGCTCTGGTTTGCAAGATAGCAGCAACCATTGTCTGGAAAGTCCAAAAAGGCATTCATTATATTGTGAAAAACACCTCCCAAGCTGGCTGAAACGTGCTAGAAATGGTAAGAGTAGGATAATATCAAAGGAAGTATTTGTAGATCTTTTGAAGGATTGCCACTCACATGAGCACAAGTTGCATATACATAAAGCGTGTGAGCTTTTTTACAAGCTCTTTAAAAGTATATTATCTTTAAGAAATCCTGTCCCTAAGGATGTTCAGTTTCAGTGGGCTTTATCTGAAGCTTCTAAGAATTTGGTTGTTGGGGAAATATTTACAAAGTTGGTTTGCAGTGAAAAGGAGAGACTTGTAAGACTTTGGGGCTTTAATACTGATGAAGATACACGTGAGGATGTATGTGTTTTGAACTCTGCCATGGAAGAACCAGCTCTGTTGCCTTGGGTTGTGGATGATAACCATGATGATGAAAGAACCATCAAGTGCAAAATTTGCTCTGAGGAATTTATGGATGACCAAGCACTTGGAACTCACTGGATGGAAAATCATAAAAAGGAAGCTCAATGGCTCTTTAGAGGTTATGCATGTGCTATCTGCCTGGATTCTTTTACTAATAAAAAAGTTTTGGAAACGCATGTCCAGGACAGACACCGTGTGCAATTTGTTGAACAATGCATGCTTCTCCAGTGCATCCCTTGTGGCAGCCACTTTGGGAATAATGAGGAGTTATGGTCACATGTGCTTGTGGTACATCCTGATGATTTCAGGCCCTCAAAAGCTGTTCAACATACTCTGTCAGCTGATGATGGATCTCCCAGGAAGTTTGAGTTGTGCAATTCAGCTTCTGTGGAGAATACCTCACAAAATTTAGCAAATGTCCGAAAGTTCGTTTGCAGATTAAAATCTGGGAGACTTAGCCGTCCTAGATTGAAAAAGAGTTTGGCAGCAGCATCATATAGGATCAGGAACAGAGCAAATGCTACTATAAAGAAACGCATCCAAGTATCCAAGTCACTTAGCAGTGGAGGAATGGATATACAGAGTCAATCAACTGAGGCAGTGAGTCTTGGTAGGTTAGCAGAATCACATTGTTCAGCAGTAGCAAGGATTTTGTTTTCTGAGATGCAGAAAACAAAACGTAGGCCCAACAACCTGGACATTTTATCTGTTGCTCGCTCTGCTTGCTGCAAGATTAGTCTTGAAGTCCTGCTGCAGGGAAAATATGGAATCTTACCACAACGCTTGTATCTGAAGGCAGCTAAGCTCTGCAGTGAGCATAACATTAAGGTAAGTTGGCATCAAGAGGGTTTCATTTGTCCTAAAGGGTGCAGGGATTTCAACGCTTTGTTGCCGTCTCCTTTGATACCTCGTCCAATTGGCACTACGGTGCACAAATCTCAACCTTTATCAGATACTTCTGAAGAAAAGTGGGAGGTGGATGAGAGTCACTATGTTGTTGGTTCAAATCACTTGAGCCAAAGGTCTTTGCAGAAGGCTCATGTATTATGTGATGATATAAGCTTTGGCCAAGAACCAGTGCCACTGGTCTGTGTAGCCGACGAAGGTCTTTTGGATTCTCTTCCTGCCAATGCAGGTAGTTCTACTCACCAAAATGCTGGACATTCCATGCCTTGGGAGAACTTTACCTATACTGCGAAGCCATTACTTGATCAATGCCCTGGACCGGATACAGAGAGTCTGCAATTGCGTTGTTCCTGCCCACATTCTACATGCTGTCCTGAAGCATGTGATCATGTCTACCTTTTTGATAATGACTATGATGATGCGAAAGACATCTATGGGAAACCCATGTCCGGCAGGTTCCCTTATGATGATAGAGGCCGAATTATTTTGGAGGAAGGCTACCTCGTTTATGAATGCAATCAGATGTGCAGCTGCAATAGAACGTGTCCTAATAGGGTCTTGCAGAATGGAGTAAGAGTGAAATTGGAAGTCTTCAAGACAGAGAAAAAGGGATGGGCAGTCAGGGCAGGTGAAGCAATCCTGCGTGGCACTTTTATTTGCGAGTACATTGGTGAGATTTTAGACGAAAATGAAGCAAACAAGAGGCGCAACAGGTATGACAAAGATGGTTACGGCTATCTTTATGAAATCAATGCTCATATTAATGATATGAGCAGATTGGTAGAAGGACAGGCACAATATGTAATCGACTCTACAAACTATGGAAATGTTTCACGATTCATCAATCATAGCTGTTCACCAAATCTTATGAATTACCAAGTTCTCGTGGAAAGCATGGATAGTGAACGTGCACATATCGGTCTATATGCTAATCGTGATATAGCTTTGGGTGAAGAATTAACATATGACTATCGGTATAAACTCCTTCCTGGAGAAGGATGTCTGTGCCATTGTGGAGCTCCCAGATGCCGAGGCCGGCTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0005488 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016278 GO:0016279 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0032259 GO:0032268 GO:0033043 GO:0033044 GO:0034968 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051276 GO:0051570 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:0140110 GO:1900109 GO:1901363 GO:1901564 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SET zf-TRM13_CCCH

Protein Analysis

1479

Amino Acids

166.1

Weight (kDa)

6.31

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3rep	PF18868	872 - 976	4.3e-48	Zinc finger C2H2-type, 3 repeats
Pre-SET	PF05033	1215 - 1316	1.4e-10	Pre-SET motif
SET	PF00856	1335 - 1455	1.8e-24	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740
fragaria_vesca	FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350
malus_domestica	MD02G1157000.v1.1 MD15G1271600.v1.1
prunus_persica	Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1
pyrus_communis	pycom02g12410 pycom15g23560
rosa_chinensis	RchiOBHm_Chr2g0103021
rosa_laevigata	RLG00000017201
rosa_multiflora	Rmu_sc0000388.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139990
rosa_rugosa	Rorug02G0111400 Rorug02G0111400 Rorug02G0111500 Rorug02G0111500
rosa_samantha	Rh2AG159700 Rh2BG166200 Rh2CG166400 Rh2DG165100
rosa_wichuraiana	Rw2G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	4010
AasI	GACNNNNNNGTC	1 cut(s)	2946
Acc16I	TGCGCA	1 cut(s)	526
Acc36I	ACCTGC	4 cut(s)	115, 3611, 3837, 4010
AccB1I	GGYRCC	1 cut(s)	475
AccB7I	CCANNNNNTGG	3 cut(s)	1817, 2062, 3660
AccI	GTMKAC	1 cut(s)	3786
AccII	CGCG	1 cut(s)	2020
AccIII	TCCGGA	1 cut(s)	1059
AciI	CCGC	2 cut(s)	161, 970
AclWI	GGATC	5 cut(s)	1681, 1913, 1926, 2845, 2996
AcoI	YGGCCR	1 cut(s)	3553
AcuI	CTGAAG	7 cut(s)	914, 1031, 2031, 2331, 3299, 3468, 3789
AcvI	CACGTG	1 cut(s)	2417
AdeI	CACNNNGTG	2 cut(s)	188, 2683
AfaI	GTAC	3 cut(s)	136, 2778, 4058
AfeI	AGCGCT	1 cut(s)	991
AflII	CTTAAG	1 cut(s)	1823
AflIII	ACRYGT	6 cut(s)	1255, 1845, 2018, 2414, 2764, 3935
AgeI	ACCGGT	1 cut(s)	1498
AhdI	GACNNNNNGTC	1 cut(s)	1200
AhlI	ACTAGT	1 cut(s)	1997
AjiI	CACGTC	2 cut(s)	731, 1848
AjnI	CCWGG	9 cut(s)	1103, 1263, 1534, 2625, 2667, 2843, 3180, 3706, 4381
AjuI	GAANNNNNNNTTGG	8 cut(s)	607, 639, 1004, 1036, 2065, 2097, 2951, 2983
AleI	CACNNNNGTG	3 cut(s)	1179, 1696, 3413
AloI	GAACNNNNNNTCC	2 cut(s)	1698, 1730
Alw21I	GWGCWC	7 cut(s)	12, 1632, 1906, 2202, 3420, 4306, 4414
Alw26I	GTCTC	8 cut(s)	800, 1059, 1644, 1746, 2009, 2368, 2932, 3387
Alw44I	GTGCAC	3 cut(s)	1628, 3416, 4302
AlwI	GGATC	5 cut(s)	1681, 1913, 1926, 2845, 2996
AlwNI	CAGNNNCTG	1 cut(s)	2873
Aor13HI	TCCGGA	1 cut(s)	1059
Aor51HI	AGCGCT	1 cut(s)	991
AoxI	GGCC	8 cut(s)	167, 539, 1223, 2795, 3170, 3553, 3868, 4426
ApaLI	GTGCAC	3 cut(s)	1628, 3416, 4302
AseI	ATTAAT	1 cut(s)	4155
AsiGI	ACCGGT	1 cut(s)	1498
Asp700I	GAANNNNTTC	2 cut(s)	619, 4222
AspLEI	GCGC	3 cut(s)	527, 992, 4101
AspS9I	GGNCC	7 cut(s)	167, 540, 648, 1224, 2796, 3171, 3710
AsuHPI	GGTGA	8 cut(s)	200, 1622, 1904, 3626, 4034, 4076, 4242, 4355
AvaII	GGWCC	2 cut(s)	648, 3710
AxyI	CCTNAGG	1 cut(s)	2280
BaeGI	GKGCMC	3 cut(s)	1632, 3420, 4306
BaeI	ACNNNNGTAYC	2 cut(s)	3257, 3290
BalI	TGGCCA	1 cut(s)	3555
BamHI	GGATCC	1 cut(s)	1918
BanI	GGYRCC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	4414
BarI	GAAGNNNNNNTAC	2 cut(s)	1510, 1542
BauI	CACGAG	1 cut(s)	4277
BbrPI	CACGTG	1 cut(s)	2417
BbsI	GAAGAC	4 cut(s)	720, 1196, 1518, 3976
Bbv12I	GWGCWC	7 cut(s)	12, 1632, 1906, 2202, 3420, 4306, 4414
BceAI	ACGGC	4 cut(s)	1227, 2931, 3364, 4141
BcgI	CGANNNNNNTGC	4 cut(s)	311, 345, 1970, 2004
BciT130I	CCWGG	9 cut(s)	1105, 1265, 1536, 2627, 2669, 2845, 3182, 3708, 4383
BciVI	GTATCC	3 cut(s)	1681, 3043, 3709
BclI	TGATCA	3 cut(s)	778, 3697, 3778
BcoDI	GTCTC	8 cut(s)	800, 1059, 1644, 1746, 2009, 2368, 2932, 3387
BcuI	ACTAGT	1 cut(s)	1997
BfaI	CTAG	8 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 2952
BfmI	CTRYAG	7 cut(s)	345, 941, 985, 1293, 1870, 3239, 3295
BfoI	RGCGCY	1 cut(s)	993
BfrI	CTTAAG	1 cut(s)	1823
BfuAI	ACCTGC	4 cut(s)	115, 3611, 3837, 4010
BfuI	GTATCC	3 cut(s)	1681, 3043, 3709
BglII	AGATCT	1 cut(s)	2170
BlpI	GCTNAGC	1 cut(s)	3288
Bme1390I	CCNGG	9 cut(s)	1105, 1265, 1536, 2627, 2669, 2845, 3182, 3708, 4383
Bme18I	GGWCC	2 cut(s)	648, 3710
BmeRI	GACNNNNNGTC	1 cut(s)	1200
BmgBI	CACGTC	2 cut(s)	731, 1848
BmgT120I	GGNCC	7 cut(s)	167, 540, 648, 1224, 2796, 3171, 3710
BmiI	GGNNCC	5 cut(s)	477, 542, 1920, 1964, 3851
BmrFI	CCNGG	9 cut(s)	1105, 1265, 1536, 2627, 2669, 2845, 3182, 3708, 4383
BoxI	GACNNNNGTC	2 cut(s)	1499, 3591
BpiI	GAAGAC	4 cut(s)	720, 1196, 1518, 3976
BplI	GAGNNNNNCTC	3 cut(s)	2870, 2902, 4416
BpmI	CTGGAG	4 cut(s)	1428, 1794, 2696, 4404
Bpu1102I	GCTNAGC	1 cut(s)	3288
BpuEI	CTTGAG	2 cut(s)	739, 3520
Bsa29I	ATCGAT	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	2417
BsaBI	GATNNNNATC	1 cut(s)	2929
BsaI	GGTCTC	1 cut(s)	1746
BsaJI	CCNNGG	8 cut(s)	1263, 1535, 2445, 2468, 2843, 3659, 3706, 4423
BsaWI	WCCGGW	3 cut(s)	1059, 1498, 3712
BsaXI	ACNNNNNCTCC	6 cut(s)	1832, 1862, 2744, 2774, 3954, 3984
Bse118I	RCCGGY	2 cut(s)	1498, 4428
Bse1I	ACTGG	8 cut(s)	542, 1051, 1411, 1459, 2567, 2713, 3563, 3576
Bse21I	CCTNAGG	1 cut(s)	2280
Bse3DI	GCAATG	2 cut(s)	1557, 1592
Bse8I	GATNNNNATC	1 cut(s)	2929
BseAI	TCCGGA	1 cut(s)	1059
BseBI	CCWGG	9 cut(s)	1105, 1265, 1536, 2627, 2669, 2845, 3182, 3708, 4383
BseCI	ATCGAT	1 cut(s)	654
BseDI	CCNNGG	8 cut(s)	1263, 1535, 2445, 2468, 2843, 3659, 3706, 4423
BseJI	GATNNNNATC	1 cut(s)	2929
BseMI	GCAATG	2 cut(s)	1557, 1592
BseMII	CTCAG	9 cut(s)	237, 783, 1083, 1305, 1374, 1776, 2517, 3072, 3138
BseNI	ACTGG	8 cut(s)	542, 1051, 1411, 1459, 2567, 2713, 3563, 3576
BseRI	GAGGAG	2 cut(s)	1853, 2765
BseSI	GKGCMC	3 cut(s)	1632, 3420, 4306
BsgI	GTGCAG	5 cut(s)	986, 1266, 1383, 3376, 3940
Bsh1236I	CGCG	1 cut(s)	2020
BshFI	GGCC	8 cut(s)	169, 541, 1225, 2797, 3172, 3555, 3870, 4428
BshNI	GGYRCC	1 cut(s)	475
BshTI	ACCGGT	1 cut(s)	1498
BshVI	ATCGAT	1 cut(s)	654
BsiHKAI	GWGCWC	7 cut(s)	12, 1632, 1906, 2202, 3420, 4306, 4414
BsiSI	CCGG	5 cut(s)	1060, 1499, 3713, 3843, 4429
BsiWI	CGTACG	1 cut(s)	134
BslFI	GGGAC	2 cut(s)	1552, 2261
BsmAI	GTCTC	8 cut(s)	800, 1059, 1644, 1746, 2009, 2368, 2932, 3387
BsmBI	CGTCTC	3 cut(s)	1644, 2009, 3387
BsmFI	GGGAC	2 cut(s)	1552, 2261
BsmI	GAATGC	5 cut(s)	768, 985, 1069, 2080, 3911
BsnI	GGCC	8 cut(s)	169, 541, 1225, 2797, 3172, 3555, 3870, 4428
Bso31I	GGTCTC	1 cut(s)	1746
Bsp1286I	GDGCHC	7 cut(s)	12, 1632, 1906, 2202, 3420, 4306, 4414
Bsp13I	TCCGGA	1 cut(s)	1059
Bsp1720I	GCTNAGC	1 cut(s)	3288
Bsp19I	CCATGG	1 cut(s)	2445
BspACI	CCGC	2 cut(s)	161, 970
BspANI	GGCC	8 cut(s)	169, 541, 1225, 2797, 3172, 3555, 3870, 4428
BspCNI	CTCAG	9 cut(s)	236, 784, 1084, 1306, 1373, 1777, 2518, 3073, 3139
BspDI	ATCGAT	1 cut(s)	654
BspEI	TCCGGA	1 cut(s)	1059
BspFNI	CGCG	1 cut(s)	2020
BspHI	TCATGA	3 cut(s)	208, 466, 571
BspLI	GGNNCC	5 cut(s)	477, 542, 1920, 1964, 3851
BspMAI	CTGCAG	3 cut(s)	1874, 3243, 3299
BspMI	ACCTGC	4 cut(s)	115, 3611, 3837, 4010
BspPI	GGATC	5 cut(s)	1681, 1913, 1926, 2845, 2996
BspQI	GCTCTTC	1 cut(s)	1759
BspT107I	GGYRCC	1 cut(s)	475
BspTI	CTTAAG	1 cut(s)	1823
BspTNI	GGTCTC	1 cut(s)	1746
BsrDI	GCAATG	2 cut(s)	1557, 1592
BsrFI	RCCGGY	2 cut(s)	1498, 4428
BsrI	ACTGG	8 cut(s)	542, 1051, 1411, 1459, 2567, 2713, 3563, 3576
BssAI	RCCGGY	2 cut(s)	1498, 4428
BssECI	CCNNGG	8 cut(s)	1263, 1535, 2445, 2468, 2843, 3659, 3706, 4423
BssSI	CACGAG	1 cut(s)	4277
BssT1I	CCWWGG	3 cut(s)	2445, 2468, 3659
Bst2BI	CACGAG	1 cut(s)	4277
Bst2UI	CCWGG	9 cut(s)	1105, 1265, 1536, 2627, 2669, 2845, 3182, 3708, 4383
Bst6I	CTCTTC	4 cut(s)	1214, 1759, 2007, 3612
BstAFI	CTTAAG	1 cut(s)	1823
BstAPI	GCANNNNNTGC	2 cut(s)	2206, 2520
BstBAI	YACGTR	1 cut(s)	2417
BstC8I	GCNNGC	7 cut(s)	510, 1939, 2114, 2705, 3202, 3211, 4430
BstDSI	CCRYGG	1 cut(s)	2445
BstENI	CCTNNNNNAGG	3 cut(s)	174, 3239, 4386
BstFNI	CGCG	1 cut(s)	2020
BstH2I	RGCGCY	1 cut(s)	993
BstHHI	GCGC	3 cut(s)	527, 992, 4101
BstMAI	GTCTC	8 cut(s)	800, 1059, 1644, 1746, 2009, 2368, 2932, 3387
BstNI	CCWGG	9 cut(s)	1105, 1265, 1536, 2627, 2669, 2845, 3182, 3708, 4383
BstNSI	RCATGY	8 cut(s)	637, 1259, 2616, 2666, 2707, 2768, 3762, 3777
BstPAI	GACNNNNGTC	2 cut(s)	1499, 3591
BstSCI	CCNGG	9 cut(s)	1103, 1263, 1534, 2625, 2667, 2843, 3180, 3706, 4381
BstSFI	CTRYAG	7 cut(s)	345, 941, 985, 1293, 1870, 3239, 3295
BstSLI	GKGCMC	3 cut(s)	1632, 3420, 4306
BstUI	CGCG	1 cut(s)	2020
BstV2I	GAAGAC	4 cut(s)	720, 1196, 1518, 3976
BstX2I	RGATCY	4 cut(s)	1673, 1918, 2170, 2837
BstXI	CCANNNNNNTGG	3 cut(s)	2552, 3181, 3644
BstYI	RGATCY	4 cut(s)	1673, 1918, 2170, 2837
Bsu15I	ATCGAT	1 cut(s)	654
Bsu36I	CCTNAGG	1 cut(s)	2280
BsuI	GTATCC	3 cut(s)	1681, 3043, 3709
BsuRI	GGCC	8 cut(s)	169, 541, 1225, 2797, 3172, 3555, 3870, 4428
BsuTUI	ATCGAT	1 cut(s)	654
BtgI	CCRYGG	1 cut(s)	2445
BtgZI	GCGATG	1 cut(s)	1956
BtrI	CACGTC	2 cut(s)	731, 1848
BtsI	GCAGTG	6 cut(s)	400, 1074, 2368, 3055, 3093, 3304
BveI	ACCTGC	4 cut(s)	115, 3611, 3837, 4010
Cac8I	GCNNGC	7 cut(s)	510, 1939, 2114, 2705, 3202, 3211, 4430
CaiI	CAGNNNCTG	1 cut(s)	2873
CciI	TCATGA	3 cut(s)	208, 466, 571
CfoI	GCGC	3 cut(s)	527, 992, 4101
Cfr10I	RCCGGY	2 cut(s)	1498, 4428
Cfr13I	GGNCC	7 cut(s)	167, 540, 648, 1224, 2796, 3171, 3710
ClaI	ATCGAT	1 cut(s)	654
CseI	GACGC	1 cut(s)	2026
Csp6I	GTAC	3 cut(s)	135, 2777, 4057
CspAI	ACCGGT	1 cut(s)	1498
CspCI	CAANNNNNGTGG	2 cut(s)	3252, 3287
CviQI	GTAC	3 cut(s)	135, 2777, 4057
DraI	TTTAAA	1 cut(s)	2248
DraIII	CACNNNGTG	2 cut(s)	188, 2683
DrdI	GACNNNNNNGTC	1 cut(s)	2946
DriI	GACNNNNNGTC	1 cut(s)	1200
DseDI	GACNNNNNNGTC	1 cut(s)	2946
EaeI	YGGCCR	1 cut(s)	3553
Eam1104I	CTCTTC	4 cut(s)	1214, 1759, 2007, 3612
Eam1105I	GACNNNNNGTC	1 cut(s)	1200
EarI	CTCTTC	4 cut(s)	1214, 1759, 2007, 3612
Ecl136II	GAGCTC	1 cut(s)	4412
Eco130I	CCWWGG	3 cut(s)	2445, 2468, 3659
Eco24I	GRGCYC	1 cut(s)	4414
Eco31I	GGTCTC	1 cut(s)	1746
Eco47I	GGWCC	2 cut(s)	648, 3710
Eco47III	AGCGCT	1 cut(s)	991
Eco53kI	GAGCTC	1 cut(s)	4412
Eco57I	CTGAAG	7 cut(s)	914, 1031, 2031, 2331, 3299, 3468, 3789
Eco72I	CACGTG	1 cut(s)	2417
Eco81I	CCTNAGG	1 cut(s)	2280
EcoICRI	GAGCTC	1 cut(s)	4412
EcoNI	CCTNNNNNAGG	3 cut(s)	174, 3239, 4386
EcoO109I	RGGNCCY	2 cut(s)	167, 2796
EcoRI	GAATTC	2 cut(s)	516, 946
EcoRII	CCWGG	9 cut(s)	1103, 1263, 1534, 2625, 2667, 2843, 3180, 3706, 4381
EcoT14I	CCWWGG	3 cut(s)	2445, 2468, 3659
EcoT22I	ATGCAT	2 cut(s)	2614, 2705
EcoT38I	GRGCYC	1 cut(s)	4414
ErhI	CCWWGG	3 cut(s)	2445, 2468, 3659
Esp3I	CGTCTC	3 cut(s)	1644, 2009, 3387
FaqI	GGGAC	2 cut(s)	1552, 2261
FauNDI	CATATG	1 cut(s)	4357
FbaI	TGATCA	3 cut(s)	778, 3697, 3778
FblI	GTMKAC	1 cut(s)	3786
FriOI	GRGCYC	1 cut(s)	4414
FspBI	CTAG	8 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 2952
FspI	TGCGCA	1 cut(s)	526
GlaI	GCGC	3 cut(s)	526, 991, 4100
GsuI	CTGGAG	4 cut(s)	1428, 1794, 2696, 4404
HaeII	RGCGCY	1 cut(s)	993
HaeIII	GGCC	8 cut(s)	169, 541, 1225, 2797, 3172, 3555, 3870, 4428
HapII	CCGG	5 cut(s)	1060, 1499, 3713, 3843, 4429
HgaI	GACGC	1 cut(s)	2026
HhaI	GCGC	3 cut(s)	527, 992, 4101
Hin6I	GCGC	3 cut(s)	525, 990, 4099
HinP1I	GCGC	3 cut(s)	525, 990, 4099
HindIII	AAGCTT	3 cut(s)	1229, 2313, 3547
HpaII	CCGG	5 cut(s)	1060, 1499, 3713, 3843, 4429
HphI	GGTGA	8 cut(s)	200, 1622, 1904, 3626, 4034, 4076, 4242, 4355
Hpy166II	GTNNAC	7 cut(s)	1618, 1630, 3418, 3787, 4250, 4298, 4304
Hpy8I	GTNNAC	7 cut(s)	1618, 1630, 3418, 3787, 4250, 4298, 4304
Hpy99I	CGWCG	4 cut(s)	323, 326, 735, 3590
HpyCH4IV	ACGT	9 cut(s)	324, 730, 1440, 1847, 2122, 2416, 3166, 3935, 4300
HpySE526I	ACGT	9 cut(s)	324, 730, 1440, 1847, 2122, 2416, 3166, 3935, 4300
HspAI	GCGC	3 cut(s)	525, 990, 4099
Kpn2I	TCCGGA	1 cut(s)	1059
KroI	GCCGGC	1 cut(s)	4428
KroNI	GCCGGC	1 cut(s)	4430
Ksp22I	TGATCA	3 cut(s)	778, 3697, 3778
LguI	GCTCTTC	1 cut(s)	1759
LmnI	GCTCC	6 cut(s)	15, 242, 1909, 1962, 4409, 4417
MaeI	CTAG	8 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 2952
MaeII	ACGT	9 cut(s)	324, 730, 1440, 1847, 2122, 2416, 3166, 3935, 4300
MaeIII	GTNAC	7 cut(s)	860, 1192, 2005, 2760, 3039, 3473, 4121
MfeI	CAATTG	2 cut(s)	3402, 3731
MflI	RGATCY	4 cut(s)	1673, 1918, 2170, 2837
MhlI	GDGCHC	7 cut(s)	12, 1632, 1906, 2202, 3420, 4306, 4414
MlsI	TGGCCA	1 cut(s)	3555
MluI	ACGCGT	1 cut(s)	2018
MluNI	TGGCCA	1 cut(s)	3555
MlyI	GAGTC	9 cut(s)	440, 440, 1037, 1304, 3079, 3100, 3481, 3733, 4196
MmeI	TCCRAC	3 cut(s)	215, 739, 1906
Mox20I	TGGCCA	1 cut(s)	3555
Mph1103I	ATGCAT	2 cut(s)	2614, 2705
MroI	TCCGGA	1 cut(s)	1059
MroNI	GCCGGC	1 cut(s)	4428
MroXI	GAANNNNTTC	2 cut(s)	619, 4222
MscI	TGGCCA	1 cut(s)	3555
MslI	CAYNNNNRTG	8 cut(s)	1179, 1696, 2193, 2493, 2784, 3413, 3639, 4155
Msp20I	TGGCCA	1 cut(s)	3555
MspA1I	CMGCKG	3 cut(s)	970, 2828, 3924
MspCI	CTTAAG	1 cut(s)	1823
MspI	CCGG	5 cut(s)	1060, 1499, 3713, 3843, 4429
MspR9I	CCNGG	9 cut(s)	1105, 1265, 1536, 2627, 2669, 2845, 3182, 3708, 4383
MunI	CAATTG	2 cut(s)	3402, 3731
Mva1269I	GAATGC	5 cut(s)	768, 985, 1069, 2080, 3911
MvaI	CCWGG	9 cut(s)	1105, 1265, 1536, 2627, 2669, 2845, 3182, 3708, 4383
MvnI	CGCG	1 cut(s)	2020
NaeI	GCCGGC	1 cut(s)	4430
NcoI	CCATGG	1 cut(s)	2445
NdeI	CATATG	1 cut(s)	4357
NgoMIV	GCCGGC	1 cut(s)	4428
NlaIV	GGNNCC	5 cut(s)	477, 542, 1920, 1964, 3851
NmuCI	GTSAC	5 cut(s)	1192, 2005, 2760, 3039, 3473
NsbI	TGCGCA	1 cut(s)	526
NsiI	ATGCAT	2 cut(s)	2614, 2705
NspI	RCATGY	8 cut(s)	637, 1259, 2616, 2666, 2707, 2768, 3762, 3777
OliI	CACNNNNGTG	3 cut(s)	1179, 1696, 3413
PaeI	GCATGC	1 cut(s)	2707
PagI	TCATGA	3 cut(s)	208, 466, 571
PaqCI	CACCTGC	1 cut(s)	4010
PciI	ACATGT	2 cut(s)	1255, 2764
PciSI	GCTCTTC	1 cut(s)	1759
PctI	GAATGC	5 cut(s)	768, 985, 1069, 2080, 3911
PdiI	GCCGGC	1 cut(s)	4430
PdmI	GAANNNNTTC	2 cut(s)	619, 4222
Pfl23II	CGTACG	1 cut(s)	134
PflMI	CCANNNNNTGG	3 cut(s)	1817, 2062, 3660
PfoI	TCCNGGA	2 cut(s)	2667, 4381
PinAI	ACCGGT	1 cut(s)	1498
PleI	GAGTC	9 cut(s)	439, 440, 1036, 1304, 3078, 3099, 3480, 3732, 4196
PmaCI	CACGTG	1 cut(s)	2417
PmlI	CACGTG	1 cut(s)	2417
PpsI	GAGTC	9 cut(s)	439, 440, 1036, 1304, 3078, 3099, 3480, 3732, 4196
Ppu21I	YACGTR	1 cut(s)	2417
PscI	ACATGT	2 cut(s)	1255, 2764
PshAI	GACNNNNGTC	2 cut(s)	1499, 3591
PshBI	ATTAAT	1 cut(s)	4155
Psp124BI	GAGCTC	1 cut(s)	4414
Psp6I	CCWGG	9 cut(s)	1103, 1263, 1534, 2625, 2667, 2843, 3180, 3706, 4381
PspCI	CACGTG	1 cut(s)	2417
PspGI	CCWGG	9 cut(s)	1103, 1263, 1534, 2625, 2667, 2843, 3180, 3706, 4381
PspLI	CGTACG	1 cut(s)	134
PspN4I	GGNNCC	5 cut(s)	477, 542, 1920, 1964, 3851
PspPI	GGNCC	7 cut(s)	167, 540, 648, 1224, 2796, 3171, 3710
PstI	CTGCAG	3 cut(s)	1874, 3243, 3299
PstNI	CAGNNNCTG	1 cut(s)	2873
PsuI	RGATCY	4 cut(s)	1673, 1918, 2170, 2837
PvuII	CAGCTG	2 cut(s)	2828, 3924
RsaI	GTAC	3 cut(s)	136, 2778, 4058
RsaNI	GTAC	3 cut(s)	135, 2777, 4057
RseI	CAYNNNNRTG	8 cut(s)	1179, 1696, 2193, 2493, 2784, 3413, 3639, 4155
SacI	GAGCTC	1 cut(s)	4414
SapI	GCTCTTC	1 cut(s)	1759
Sau96I	GGNCC	7 cut(s)	167, 540, 648, 1224, 2796, 3171, 3710
SchI	GAGTC	9 cut(s)	440, 440, 1037, 1304, 3079, 3100, 3481, 3733, 4196
ScrFI	CCNGG	9 cut(s)	1105, 1265, 1536, 2627, 2669, 2845, 3182, 3708, 4383
SduI	GDGCHC	7 cut(s)	12, 1632, 1906, 2202, 3420, 4306, 4414
SfcI	CTRYAG	7 cut(s)	345, 941, 985, 1293, 1870, 3239, 3295
SinI	GGWCC	2 cut(s)	648, 3710
SmiMI	CAYNNNNRTG	8 cut(s)	1179, 1696, 2193, 2493, 2784, 3413, 3639, 4155
SmlI	CTYRAG	3 cut(s)	718, 1823, 3499
SmoI	CTYRAG	3 cut(s)	718, 1823, 3499
SpeI	ACTAGT	1 cut(s)	1997
SphI	GCATGC	1 cut(s)	2707
SsiI	CCGC	2 cut(s)	161, 970
SspI	AATATT	2 cut(s)	587, 2343
SspMI	CTAG	8 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 2952
SstI	GAGCTC	1 cut(s)	4414
StyD4I	CCNGG	9 cut(s)	1103, 1263, 1534, 2625, 2667, 2843, 3180, 3706, 4381
StyI	CCWWGG	3 cut(s)	2445, 2468, 3659
TaiI	ACGT	9 cut(s)	327, 733, 1443, 1850, 2125, 2419, 3169, 3938, 4303
TaqI	TCGA	7 cut(s)	20, 28, 654, 1026, 1330, 1549, 4200
TaqII	GACCGA	3 cut(s)	636, 1728, 4301
TatI	WGTACW	1 cut(s)	4056
TseFI	GTSAC	5 cut(s)	1192, 2005, 2760, 3039, 3473
Tsp45I	GTSAC	5 cut(s)	1192, 2005, 2760, 3039, 3473
Van91I	CCANNNNNTGG	3 cut(s)	1817, 2062, 3660
Vha464I	CTTAAG	1 cut(s)	1823
VneI	GTGCAC	3 cut(s)	1628, 3416, 4302
VpaK11BI	GGWCC	2 cut(s)	648, 3710
VspI	ATTAAT	1 cut(s)	4155
XagI	CCTNNNNNAGG	3 cut(s)	174, 3239, 4386
XceI	RCATGY	8 cut(s)	637, 1259, 2616, 2666, 2707, 2768, 3762, 3777
XmiI	GTMKAC	1 cut(s)	3786
XmnI	GAANNNNTTC	2 cut(s)	619, 4222
XspI	CTAG	8 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 2952
Zsp2I	ATGCAT	2 cut(s)	2614, 2705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.