Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003021

Physical Location & Seq

Genomic Coordinates Reverse (-)

13042094 .. 13050235

Gene Structure 8142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4557 bp

ATGGAAGTGCTCCCTTGTTCGAGCGTTCGATGTGTTGAAAAATCTGACTGCCCTCAACAGAGTTCAGGAACAACTCCTGTGAATGGAGAATCTAACTGCCTTGAACCTGCAAAGCAAGTGCAAGTAATAGATCGTACAGTAGAAGGCTTATTGCCAAATGCGAAAGGGCCTCAATTAGGAACACAAGGTGTGGTTAAAGGGGCAGTTCATGAATTGCATGCCTCAGAAGGATGTCGGAATGGATCTTCAAGTCTTGATTGTCAAGTGGAGAGCCAAAAGTCATCTAGTGGTTCGCATGGTTTTGAATCTTTTGATGACGACGACGTAAATGCACAGAATTACTCTACAGAACCTTCCTTAATCTCTGACAATAGTGGTCTGAAATTAGATAGCAGTGAAAATGGACTTCCATACAACAGTAGGGAAGGAGAGTCATCTCATTCAGACTCCACATGGCTAGAATGTCATGAATCGGTGCCACTGTGGGTCAAGTGGAGAGGCAAGTGGCAGGCAGGAATTCGTTGCGCAAGAGCTGACTGGCCCCTATCAACTTTGAGAGCAAAACCAACTCATGACAGGAAGAAATATTTTGTGATATTTTTTCCCCACACAAGAAATTATTCTTGGGCAGACATGCTACTTGTTCGGTCCATCGATGAAATTCCACAGCCTATTGCATATAAAACACATAATGCTGGTTTGAGAATGGTAGAAGACTTGAGTGTTGCACGTCGGTTTATCATGCAAAAGTTAGCTGTTGGAATGCTGAATATAGTTGATCAATTTCATACTGAGGCTTTAATAGAGACTGCTCGTAATGTGGTGGTCTGGAAGGAGTTTGCTATGGAGGCTTCTCGCTGTAACGGTTATTCTGATCTGGGAAAGATGCTTCTGAAGCTGCAAAGTATGATTTCGCAGAGCTACATAAATCATAATTGGCTACAGAATTCAAATCATTCTTGGGTGCAGAGGTGTCAGAATGCCTGTAGCGCTGAGACTGTTGAACTACTGAAGGAGGAATTGGTTGAGTCTATTCTCTGGAATGAAGTCCAGTCTCTTCGGAATGCAGCGTTGCAACCTACTTTGGGTTCTGAGTGGAGAACCTGGAAGCATGAAGTTATGAAATGGTTTTCAACCTCTCATCCCATATCTAATGGTGGGGAATTTCCACAGCACAGTAGTGATGCCCCTGTGACCCCAAGTCTTCAAGTTAGCAGGAAGAGGCCCAAGCTTGAAGTTCGCCGTGCAGAGGCACATGTTTCCCAGGTGGAATCTAGGGGTTCAGATGAAGCTATAGCCATTGAAATTGACTCTGAGTTCTTTAATAATCGAGAGGCTGTAAATTCTGCTACATTAGCCTCAGAACCCGATAAAGAAGTAAATATGAAAGATGTTGCTGCACTGACTGGAGATGGTGGTGTTGCTGATAAATGGGATGACGCTGTAGTTGCAACTGGAAATTCTGTGTTTATCCAAAGCAAAGATGTGGAAATGACACCGGTCAATGATGTGGCTGGTATAAAGTCTTCTGTTCCTGGGACTAAAAATCGACAGTGCACTGCTTATATTGAAGCCAAAGGAAGGCAATGTGTGAGATGGGCGAATGATGGTGATGTTTACTGTTGTGTGCACTTGTCGTCTCGTTTCACGGGCAGCTCTACAAAATCAGAGGGATCTCACTCTATGGATACACCAATGTGTGAAGGAACAACTGTTCTTGGAACTAAATGTAAGCATCGGTCTCTTTATGGCTCTTCATTCTGTAAGAAGCATAGACCAAAAACTGAGAGGGAAACAATCATAAATACTCCAGAGAATGGACTTAAGAGAAAGTATGAGGAGAACATGTCTAGTTTAGATACCATGAACTGCAGAGAGATGGTGTTGGTGGGAGATGTTGGTGCTCCACTAGAAGTGGATCCTGTTGGAATCATGGCCGGAGATGGCTTTAATGGAAGGGGGAGCCTATTTGAGAAGTCCGAACTTCCTGCCAAAACTAGTAATGTGACTGAAGAGATGCGTTGCATAGGCTCTGGTTTGCAAGATAGCAGCAACCATTGTCTGGAAAGTCCAAAAAGGCATTCATTATATTGTGAAAAACACCTCCCAAGCTGGCTGAAACGTGCTAGAAATGGTAAGAGTAGGATAATATCAAAGGAAGTATTTGTAGATCTTTTGAAGGATTGCCACTCGCATGAGCACAAGTTGCATATACATAAAGCGTGTGAGCTTTTTTACAAGCTCTTTAAAAGTATATTATCTTTAAGAAATCCTGTCCCTAAGGATGTTCAGTTTCAGTGGGCTTTATCTGAAGCTTCGAAGAATTTGGTTGTTGGGGAAATATTTACAAAGTTGGTTTGCAGTGAAAAGGAGAGACTCGTAAGACTTTGGGGCTTTAATACTGATGAAGATACACGTGAGGATGTATGTGTTTTGAACTCTGCCATGGAAGAACCAGCTCTGTTGCCTTGGGTTGTGGACGATAACCATGATGATGAAAGAGCCATCAAGTGCAAAATTTGCTCTGAGGAATTTATGGATGACCAAGCACTTGGAACTCACTGGATGGAAAATCATAAAAAGGAAGCTCAATGGCTCTTTAGAGGTTATGCATGTGCTATCTGCCTGGATTCTTTTACTAATAAAAAAGTTTTGGAAACGCATGTCCAGGACAGACACCGTGTGCAATTTGTTGAACAATGCATGCTTCTCCAGTGCATCCCTTGTGGCAGCCACTTTGGGAATAATGAGGAGTTATGGTCACATGTGCTTGTGGTACATCCTGATGATTTCAGGCCCTCAAAAGCTGTTCAACATACTCTGTCAGCTGATGATGGCTCTCCAAGGAATTTTGAGTTGTGCAATTCAGCTTCTGTGGAGAATACCTCACAAAATTTAGCTAATGTCCGAAAGTTCGTTTGCAGGTTTTGTGGTTTGAAATTTGATTTACTTCCCGATCTTGGCCGCCACCATCAAGCTGCCCACATGGGGCCAAGTTTAGTCAGTTCTCGGCCCTCGAAGAGGGGGATACGTTATTATGCTTATAGATTAAAATCTGGGAGACTTAGCCGTCCTAGATTGAAAAAGAGTTTGGCAGCAGCATCATATAGGATCAGGAACAGAGCAAATGCTACTATAAAGAAACGCATCCAAGCGTCCAAGTCACTTAGCAGTGGAGGAATGGATATTCAGAGTCAATCAACTGAGGCAGTGAGTCTTGGTAGGTTAGCAGAATCACATTGTTCAGCAGTAGCAAGGATTTTGTTTTCTGAGATGCAGAAAACAAAACGTAGGCCCAACAACCTGGACATTTTATCTGTTGCTCGCTCTGCTTGCTGCAAGATTAGTCTTGAAGTCCTGCTGCAGGGAAAATATGGAATCTTGCCACAACGCTTGTATCTGAAGGCAGCTAAGCTCTGCAGTGAGCATAACATTAAGGTAAGTTGGCATCAAGAGGGTTTCATTTGTCCTAAAGGGTGCAGGGATTTCAATGCTTTGTTGCCGTCTCCTTTGATACCTCGTCCAATTGGTACTACGGTGCACAAATCTCAACTTTTATCAGATCCTTCTGAAGAAAAGTGGGAGGTGGATGAGAGTCACTATGTTGTTGGTTCAAATCACTTGAGCCAAAGGTCTTTGCAGAAGGCTCATGTATTATGTGATGATATAAGCTTTGGCCAAGAACTAGTGCCACTGGTCTGTGTAGCCGACGAAGGTCTTTTGGATTCTCTTCCTGCCAATGCAGGTAGTTCTACTCATCAAAATGCTGGACATTCCATGCCTTGGGAGAACTTTACCTATACTGCGAAGCCATTATTTGATCAATCCCCTGGACTGGATACAGAGAGTTTGCAATTGCGTTGTTCCTGCCCACATTCTACATGCTGTCCTGAAGCATGTGATCATGTCTACCTTTTTGATAATGACTATGATAATGCGAAAGACATCTATGGGAAACCCATGTGCGGCAGGTTCCCCTATGATGATAGAGGCCGAATTATTTTGGAGGCTACCTCGTTTATGAATGCAATCAGATATGCAGCTGCAATAGAATGTCCTAATAGGGTCTTGCAGAATGGAGTAAGAGTGAAATTGGAAGTCTTCAAGACAGAGAAAAAGGGATGGGCAGTCAGGGCAGGTGAAGCAATCCTGCGTGGCACTTTTATTTGCGAGTACATTGGTGAGATTTTAGACGAAAATGAAGCAAACAAGAGGCGCAACAGGTATGACAGAGATGGTTATGGCTATCTTTTTGAAATCAATGCTCATATTAATGATATGAGCAGATTGGTAGAAGGACAGGCACAATATGTAATCGACTCTACAAACTATGGAAATGTTTCACGATTCATCAATCATAGCTGTTCACCAAACCTTATGAATTACCAAGTTCTTGTGGAAAGCATGGATAGTGAACGTGCACATATCGGTCTATATGCTAATCGTGATATAGCTTTGGGTGAAGAATTAACATATGACTATCGGTATAAACTCCTTCCTGGAGAAGGATGTCTGTGCCATTGTGGAGCTCCCAGATGCCGAGGCCGGCTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0005488 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016278 GO:0016279 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0032259 GO:0032268 GO:0033043 GO:0033044 GO:0034968 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051276 GO:0051570 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:0140110 GO:1900109 GO:1901363 GO:1901564 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SET zf-TRM13_CCCH

Protein Analysis

1518

Amino Acids

170.36

Weight (kDa)

6.69

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3rep	PF18868	872 - 996	1.5e-65	Zinc finger C2H2-type, 3 repeats
SET	PF00856	1374 - 1494	1e-24	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740
fragaria_vesca	FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350
malus_domestica	MD02G1157000.v1.1 MD15G1271600.v1.1
prunus_persica	Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1
pyrus_communis	pycom02g12410 pycom15g23560
rosa_chinensis	RchiOBHm_Chr2g0103021
rosa_laevigata	RLG00000017201
rosa_multiflora	Rmu_sc0000388.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139990
rosa_rugosa	Rorug02G0111400 Rorug02G0111400 Rorug02G0111500 Rorug02G0111500
rosa_samantha	Rh2AG159700 Rh2BG166200 Rh2CG166400 Rh2DG165100
rosa_wichuraiana	Rw2G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	4127
AasI	GACNNNNNNGTC	1 cut(s)	3069
Acc16I	TGCGCA	1 cut(s)	526
Acc36I	ACCTGC	5 cut(s)	115, 2913, 3734, 3960, 4127
AccB1I	GGYRCC	1 cut(s)	475
AccB7I	CCANNNNNTGG	3 cut(s)	1817, 2062, 3783
AccI	GTMKAC	1 cut(s)	3909
AciI	CCGC	2 cut(s)	2965, 3966
AclWI	GGATC	6 cut(s)	250, 1681, 1913, 1926, 3119, 3557
AcoI	YGGCCR	3 cut(s)	1935, 2962, 3676
AcuI	CTGAAG	7 cut(s)	914, 1031, 2031, 2331, 3422, 3591, 3912
AcvI	CACGTG	1 cut(s)	2417
AdeI	CACNNNGTG	2 cut(s)	188, 2683
AfaI	GTAC	4 cut(s)	136, 2778, 3532, 4175
AfeI	AGCGCT	1 cut(s)	991
AflII	CTTAAG	1 cut(s)	1823
AflIII	ACRYGT	4 cut(s)	1255, 1845, 2414, 2764
AgeI	ACCGGT	1 cut(s)	1498
AhdI	GACNNNNNGTC	1 cut(s)	1200
AhlI	ACTAGT	2 cut(s)	1997, 3685
AjiI	CACGTC	1 cut(s)	731
AjnI	CCWGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3829, 4498
AjuI	GAANNNNNNNTTGG	8 cut(s)	607, 639, 1004, 1036, 2065, 2097, 3074, 3106
AleI	CACNNNNGTG	2 cut(s)	1179, 1696
AloI	GAACNNNNNNTCC	2 cut(s)	1698, 1730
Alw21I	GWGCWC	8 cut(s)	12, 1559, 1632, 1906, 2202, 3543, 4423, 4531
Alw26I	GTCTC	8 cut(s)	800, 989, 1059, 1644, 1746, 2368, 3055, 3510
Alw44I	GTGCAC	4 cut(s)	1555, 1628, 3539, 4419
AlwI	GGATC	6 cut(s)	250, 1681, 1913, 1926, 3119, 3557
AlwNI	CAGNNNCTG	1 cut(s)	2873
Aor51HI	AGCGCT	1 cut(s)	991
ApaLI	GTGCAC	4 cut(s)	1555, 1628, 3539, 4419
AseI	ATTAAT	1 cut(s)	4272
AsiGI	ACCGGT	1 cut(s)	1498
Asp700I	GAANNNNTTC	2 cut(s)	619, 4339
AspLEI	GCGC	3 cut(s)	527, 992, 4218
AspS9I	GGNCC	8 cut(s)	167, 540, 648, 1224, 2796, 2990, 3012, 3294
AsuHPI	GGTGA	5 cut(s)	1622, 4151, 4193, 4359, 4472
AsuII	TTCGAA	1 cut(s)	2318
AvaII	GGWCC	1 cut(s)	648
AxyI	CCTNAGG	1 cut(s)	2280
BaeGI	GKGCMC	4 cut(s)	1559, 1632, 3543, 4423
BaeI	ACNNNNGTAYC	4 cut(s)	3380, 3413, 3522, 3555
BalI	TGGCCA	1 cut(s)	3678
BamHI	GGATCC	1 cut(s)	1918
BanI	GGYRCC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	4531
BarI	GAAGNNNNNNTAC	2 cut(s)	1510, 1542
BbrPI	CACGTG	1 cut(s)	2417
BbsI	GAAGAC	4 cut(s)	720, 1196, 1518, 4093
Bbv12I	GWGCWC	8 cut(s)	12, 1559, 1632, 1906, 2202, 3543, 4423, 4531
BceAI	ACGGC	3 cut(s)	1227, 3054, 3487
BcgI	CGANNNNNNTGC	4 cut(s)	311, 345, 1970, 2004
BciT130I	CCWGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4500
BciVI	GTATCC	3 cut(s)	1681, 3021, 3832
BclI	TGATCA	3 cut(s)	778, 3820, 3901
BcoDI	GTCTC	8 cut(s)	800, 989, 1059, 1644, 1746, 2368, 3055, 3510
BcuI	ACTAGT	2 cut(s)	1997, 3685
BfaI	CTAG	9 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 3075, 3686
BfmI	CTRYAG	8 cut(s)	345, 941, 985, 1293, 1443, 1870, 3362, 3418
BfoI	RGCGCY	1 cut(s)	993
BfrI	CTTAAG	1 cut(s)	1823
BfuAI	ACCTGC	5 cut(s)	115, 2913, 3734, 3960, 4127
BfuI	GTATCC	3 cut(s)	1681, 3021, 3832
BglII	AGATCT	1 cut(s)	2170
BlpI	GCTNAGC	1 cut(s)	3411
Bme1390I	CCNGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4500
Bme18I	GGWCC	1 cut(s)	648
BmeRI	GACNNNNNGTC	1 cut(s)	1200
BmgBI	CACGTC	1 cut(s)	731
BmgT120I	GGNCC	8 cut(s)	167, 540, 648, 1224, 2796, 2990, 3012, 3294
BmiI	GGNNCC	6 cut(s)	477, 542, 1920, 1964, 2991, 3974
BmrFI	CCNGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4500
BoxI	GACNNNNGTC	2 cut(s)	1499, 3714
BpiI	GAAGAC	4 cut(s)	720, 1196, 1518, 4093
BplI	GAGNNNNNCTC	5 cut(s)	2870, 2902, 3998, 4030, 4533
BpmI	CTGGAG	4 cut(s)	1428, 1794, 2696, 4521
Bpu1102I	GCTNAGC	1 cut(s)	3411
Bpu14I	TTCGAA	1 cut(s)	2318
BpuEI	CTTGAG	2 cut(s)	739, 3643
Bsa29I	ATCGAT	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	2417
BsaBI	GATNNNNATC	1 cut(s)	3052
BsaI	GGTCTC	1 cut(s)	1746
BsaJI	CCNNGG	8 cut(s)	1263, 1535, 2445, 2468, 2843, 3782, 3829, 4540
BsaWI	WCCGGW	1 cut(s)	1498
BsaXI	ACNNNNNCTCC	6 cut(s)	1832, 1862, 2744, 2774, 4071, 4101
Bse118I	RCCGGY	2 cut(s)	1498, 4545
Bse1I	ACTGG	8 cut(s)	542, 1051, 1411, 1459, 2567, 2713, 3699, 3840
Bse21I	CCTNAGG	1 cut(s)	2280
Bse3DI	GCAATG	1 cut(s)	1592
Bse8I	GATNNNNATC	1 cut(s)	3052
BseBI	CCWGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4500
BseCI	ATCGAT	1 cut(s)	654
BseDI	CCNNGG	8 cut(s)	1263, 1535, 2445, 2468, 2843, 3782, 3829, 4540
BseJI	GATNNNNATC	1 cut(s)	3052
BseMI	GCAATG	1 cut(s)	1592
BseNI	ACTGG	8 cut(s)	542, 1051, 1411, 1459, 2567, 2713, 3699, 3840
BseRI	GAGGAG	2 cut(s)	1853, 2765
BseSI	GKGCMC	4 cut(s)	1559, 1632, 3543, 4423
BsgI	GTGCAG	4 cut(s)	986, 1266, 1383, 3499
BshNI	GGYRCC	1 cut(s)	475
BshTI	ACCGGT	1 cut(s)	1498
BshVI	ATCGAT	1 cut(s)	654
BsiHKAI	GWGCWC	8 cut(s)	12, 1559, 1632, 1906, 2202, 3543, 4423, 4531
BsiSI	CCGG	3 cut(s)	1499, 1938, 4546
BslFI	GGGAC	2 cut(s)	1552, 2261
BsmAI	GTCTC	8 cut(s)	800, 989, 1059, 1644, 1746, 2368, 3055, 3510
BsmBI	CGTCTC	2 cut(s)	1644, 3510
BsmFI	GGGAC	2 cut(s)	1552, 2261
BsmI	GAATGC	5 cut(s)	768, 985, 1069, 2080, 4030
Bso31I	GGTCTC	1 cut(s)	1746
Bsp119I	TTCGAA	1 cut(s)	2318
Bsp1286I	GDGCHC	8 cut(s)	12, 1559, 1632, 1906, 2202, 3543, 4423, 4531
Bsp1720I	GCTNAGC	1 cut(s)	3411
Bsp19I	CCATGG	1 cut(s)	2445
BspACI	CCGC	2 cut(s)	2965, 3966
BspDI	ATCGAT	1 cut(s)	654
BspHI	TCATGA	3 cut(s)	208, 466, 571
BspLI	GGNNCC	6 cut(s)	477, 542, 1920, 1964, 2991, 3974
BspMAI	CTGCAG	3 cut(s)	1874, 3366, 3422
BspMI	ACCTGC	5 cut(s)	115, 2913, 3734, 3960, 4127
BspPI	GGATC	6 cut(s)	250, 1681, 1913, 1926, 3119, 3557
BspQI	GCTCTTC	1 cut(s)	1759
BspT104I	TTCGAA	1 cut(s)	2318
BspT107I	GGYRCC	1 cut(s)	475
BspTI	CTTAAG	1 cut(s)	1823
BspTNI	GGTCTC	1 cut(s)	1746
BsrDI	GCAATG	1 cut(s)	1592
BsrFI	RCCGGY	2 cut(s)	1498, 4545
BsrI	ACTGG	8 cut(s)	542, 1051, 1411, 1459, 2567, 2713, 3699, 3840
BssAI	RCCGGY	2 cut(s)	1498, 4545
BssECI	CCNNGG	8 cut(s)	1263, 1535, 2445, 2468, 2843, 3782, 3829, 4540
BssT1I	CCWWGG	4 cut(s)	2445, 2468, 2843, 3782
Bst2UI	CCWGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4500
Bst6I	CTCTTC	6 cut(s)	1062, 1214, 1759, 2007, 3014, 3735
BstAFI	CTTAAG	1 cut(s)	1823
BstAPI	GCANNNNNTGC	2 cut(s)	2206, 2520
BstBAI	YACGTR	1 cut(s)	2417
BstBI	TTCGAA	1 cut(s)	2318
BstC8I	GCNNGC	7 cut(s)	219, 510, 2114, 2705, 3325, 3334, 4547
BstDSI	CCRYGG	1 cut(s)	2445
BstENI	CCTNNNNNAGG	4 cut(s)	174, 3019, 3362, 4503
BstH2I	RGCGCY	1 cut(s)	993
BstHHI	GCGC	3 cut(s)	527, 992, 4218
BstMAI	GTCTC	8 cut(s)	800, 989, 1059, 1644, 1746, 2368, 3055, 3510
BstNI	CCWGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4500
BstPAI	GACNNNNGTC	2 cut(s)	1499, 3714
BstSCI	CCNGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3829, 4498
BstSFI	CTRYAG	8 cut(s)	345, 941, 985, 1293, 1443, 1870, 3362, 3418
BstSLI	GKGCMC	4 cut(s)	1559, 1632, 3543, 4423
BstV2I	GAAGAC	4 cut(s)	720, 1196, 1518, 4093
BstX2I	RGATCY	5 cut(s)	242, 1673, 1918, 2170, 3562
BstXI	CCANNNNNNTGG	2 cut(s)	2552, 3304
BstYI	RGATCY	5 cut(s)	242, 1673, 1918, 2170, 3562
Bsu15I	ATCGAT	1 cut(s)	654
Bsu36I	CCTNAGG	1 cut(s)	2280
BsuI	GTATCC	3 cut(s)	1681, 3021, 3832
BsuTUI	ATCGAT	1 cut(s)	654
BtgI	CCRYGG	1 cut(s)	2445
BtrI	CACGTC	1 cut(s)	731
BtsI	GCAGTG	6 cut(s)	400, 1557, 2368, 3178, 3216, 3427
BveI	ACCTGC	5 cut(s)	115, 2913, 3734, 3960, 4127
Cac8I	GCNNGC	7 cut(s)	219, 510, 2114, 2705, 3325, 3334, 4547
CaiI	CAGNNNCTG	1 cut(s)	2873
CciI	TCATGA	3 cut(s)	208, 466, 571
CfoI	GCGC	3 cut(s)	527, 992, 4218
Cfr10I	RCCGGY	2 cut(s)	1498, 4545
Cfr13I	GGNCC	8 cut(s)	167, 540, 648, 1224, 2796, 2990, 3012, 3294
ClaI	ATCGAT	1 cut(s)	654
CseI	GACGC	2 cut(s)	1448, 3144
Csp6I	GTAC	4 cut(s)	135, 2777, 3531, 4174
CspAI	ACCGGT	1 cut(s)	1498
CspCI	CAANNNNNGTGG	2 cut(s)	3375, 3410
CviQI	GTAC	4 cut(s)	135, 2777, 3531, 4174
DraI	TTTAAA	1 cut(s)	2248
DraIII	CACNNNGTG	2 cut(s)	188, 2683
DrdI	GACNNNNNNGTC	1 cut(s)	3069
DriI	GACNNNNNGTC	1 cut(s)	1200
DseDI	GACNNNNNNGTC	1 cut(s)	3069
EaeI	YGGCCR	3 cut(s)	1935, 2962, 3676
Eam1104I	CTCTTC	6 cut(s)	1062, 1214, 1759, 2007, 3014, 3735
Eam1105I	GACNNNNNGTC	1 cut(s)	1200
EarI	CTCTTC	6 cut(s)	1062, 1214, 1759, 2007, 3014, 3735
Ecl136II	GAGCTC	1 cut(s)	4529
Eco130I	CCWWGG	4 cut(s)	2445, 2468, 2843, 3782
Eco24I	GRGCYC	1 cut(s)	4531
Eco31I	GGTCTC	1 cut(s)	1746
Eco47I	GGWCC	1 cut(s)	648
Eco47III	AGCGCT	1 cut(s)	991
Eco53kI	GAGCTC	1 cut(s)	4529
Eco57I	CTGAAG	7 cut(s)	914, 1031, 2031, 2331, 3422, 3591, 3912
Eco72I	CACGTG	1 cut(s)	2417
Eco81I	CCTNAGG	1 cut(s)	2280
EcoICRI	GAGCTC	1 cut(s)	4529
EcoNI	CCTNNNNNAGG	4 cut(s)	174, 3019, 3362, 4503
EcoO109I	RGGNCCY	2 cut(s)	167, 2796
EcoRI	GAATTC	2 cut(s)	516, 946
EcoRII	CCWGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3829, 4498
EcoT14I	CCWWGG	4 cut(s)	2445, 2468, 2843, 3782
EcoT22I	ATGCAT	2 cut(s)	2614, 2705
EcoT38I	GRGCYC	1 cut(s)	4531
ErhI	CCWWGG	4 cut(s)	2445, 2468, 2843, 3782
Esp3I	CGTCTC	2 cut(s)	1644, 3510
FaqI	GGGAC	2 cut(s)	1552, 2261
FauNDI	CATATG	1 cut(s)	4474
FbaI	TGATCA	3 cut(s)	778, 3820, 3901
FblI	GTMKAC	1 cut(s)	3909
FriOI	GRGCYC	1 cut(s)	4531
FspBI	CTAG	9 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 3075, 3686
FspI	TGCGCA	1 cut(s)	526
GlaI	GCGC	3 cut(s)	526, 991, 4217
GsuI	CTGGAG	4 cut(s)	1428, 1794, 2696, 4521
HaeII	RGCGCY	1 cut(s)	993
HapII	CCGG	3 cut(s)	1499, 1938, 4546
HgaI	GACGC	2 cut(s)	1448, 3144
HhaI	GCGC	3 cut(s)	527, 992, 4218
Hin6I	GCGC	3 cut(s)	525, 990, 4216
HinP1I	GCGC	3 cut(s)	525, 990, 4216
HindIII	AAGCTT	3 cut(s)	1229, 2313, 3670
HpaII	CCGG	3 cut(s)	1499, 1938, 4546
HphI	GGTGA	5 cut(s)	1622, 4151, 4193, 4359, 4472
Hpy166II	GTNNAC	9 cut(s)	1557, 1618, 1630, 2479, 3541, 3910, 4367, 4415, 4421
Hpy8I	GTNNAC	9 cut(s)	1557, 1618, 1630, 2479, 3541, 3910, 4367, 4415, 4421
Hpy99I	CGWCG	4 cut(s)	323, 326, 735, 3713
HpyCH4IV	ACGT	7 cut(s)	324, 730, 2122, 2416, 3031, 3289, 4417
HpySE526I	ACGT	7 cut(s)	324, 730, 2122, 2416, 3031, 3289, 4417
HspAI	GCGC	3 cut(s)	525, 990, 4216
KroI	GCCGGC	1 cut(s)	4545
KroNI	GCCGGC	1 cut(s)	4547
Ksp22I	TGATCA	3 cut(s)	778, 3820, 3901
LguI	GCTCTTC	1 cut(s)	1759
LmnI	GCTCC	5 cut(s)	15, 1909, 1962, 4526, 4534
MaeI	CTAG	9 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 3075, 3686
MaeII	ACGT	7 cut(s)	324, 730, 2122, 2416, 3031, 3289, 4417
MaeIII	GTNAC	6 cut(s)	860, 1192, 2005, 2760, 3162, 3596
MfeI	CAATTG	2 cut(s)	3525, 3854
MflI	RGATCY	5 cut(s)	242, 1673, 1918, 2170, 3562
MhlI	GDGCHC	8 cut(s)	12, 1559, 1632, 1906, 2202, 3543, 4423, 4531
MlsI	TGGCCA	1 cut(s)	3678
MluNI	TGGCCA	1 cut(s)	3678
MlyI	GAGTC	9 cut(s)	440, 440, 1037, 1304, 2370, 3202, 3223, 3604, 4313
MmeI	TCCRAC	3 cut(s)	215, 739, 1906
Mox20I	TGGCCA	1 cut(s)	3678
Mph1103I	ATGCAT	2 cut(s)	2614, 2705
MroNI	GCCGGC	1 cut(s)	4545
MroXI	GAANNNNTTC	2 cut(s)	619, 4339
MscI	TGGCCA	1 cut(s)	3678
MslI	CAYNNNNRTG	7 cut(s)	1179, 1696, 2193, 2493, 2784, 3762, 4272
Msp20I	TGGCCA	1 cut(s)	3678
MspA1I	CMGCKG	2 cut(s)	2828, 4043
MspCI	CTTAAG	1 cut(s)	1823
MspI	CCGG	3 cut(s)	1499, 1938, 4546
MspR9I	CCNGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4500
MunI	CAATTG	2 cut(s)	3525, 3854
Mva1269I	GAATGC	5 cut(s)	768, 985, 1069, 2080, 4030
MvaI	CCWGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4500
NaeI	GCCGGC	1 cut(s)	4547
NcoI	CCATGG	1 cut(s)	2445
NdeI	CATATG	1 cut(s)	4474
NgoMIV	GCCGGC	1 cut(s)	4545
NlaIV	GGNNCC	6 cut(s)	477, 542, 1920, 1964, 2991, 3974
NmeAIII	GCCGAG	1 cut(s)	2989
NmuCI	GTSAC	5 cut(s)	1192, 2005, 2760, 3162, 3596
NsbI	TGCGCA	1 cut(s)	526
NsiI	ATGCAT	2 cut(s)	2614, 2705
NspV	TTCGAA	1 cut(s)	2318
OliI	CACNNNNGTG	2 cut(s)	1179, 1696
PaeI	GCATGC	2 cut(s)	221, 2707
PagI	TCATGA	3 cut(s)	208, 466, 571
PaqCI	CACCTGC	1 cut(s)	4127
PciI	ACATGT	3 cut(s)	1255, 1845, 2764
PciSI	GCTCTTC	1 cut(s)	1759
PctI	GAATGC	5 cut(s)	768, 985, 1069, 2080, 4030
PdiI	GCCGGC	1 cut(s)	4547
PdmI	GAANNNNTTC	2 cut(s)	619, 4339
PflMI	CCANNNNNTGG	3 cut(s)	1817, 2062, 3783
PfoI	TCCNGGA	2 cut(s)	2667, 4498
PinAI	ACCGGT	1 cut(s)	1498
PleI	GAGTC	9 cut(s)	439, 440, 1036, 1304, 2370, 3201, 3222, 3603, 4313
PmaCI	CACGTG	1 cut(s)	2417
PmlI	CACGTG	1 cut(s)	2417
PpsI	GAGTC	9 cut(s)	439, 440, 1036, 1304, 2370, 3201, 3222, 3603, 4313
Ppu21I	YACGTR	1 cut(s)	2417
PscI	ACATGT	3 cut(s)	1255, 1845, 2764
PshAI	GACNNNNGTC	2 cut(s)	1499, 3714
PshBI	ATTAAT	1 cut(s)	4272
Psp124BI	GAGCTC	1 cut(s)	4531
Psp6I	CCWGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3829, 4498
PspCI	CACGTG	1 cut(s)	2417
PspGI	CCWGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3829, 4498
PspN4I	GGNNCC	6 cut(s)	477, 542, 1920, 1964, 2991, 3974
PspPI	GGNCC	8 cut(s)	167, 540, 648, 1224, 2796, 2990, 3012, 3294
PstI	CTGCAG	3 cut(s)	1874, 3366, 3422
PstNI	CAGNNNCTG	1 cut(s)	2873
PsuI	RGATCY	5 cut(s)	242, 1673, 1918, 2170, 3562
PvuII	CAGCTG	2 cut(s)	2828, 4043
RsaI	GTAC	4 cut(s)	136, 2778, 3532, 4175
RsaNI	GTAC	4 cut(s)	135, 2777, 3531, 4174
RseI	CAYNNNNRTG	7 cut(s)	1179, 1696, 2193, 2493, 2784, 3762, 4272
SacI	GAGCTC	1 cut(s)	4531
SapI	GCTCTTC	1 cut(s)	1759
Sau96I	GGNCC	8 cut(s)	167, 540, 648, 1224, 2796, 2990, 3012, 3294
SchI	GAGTC	9 cut(s)	440, 440, 1037, 1304, 2370, 3202, 3223, 3604, 4313
ScrFI	CCNGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4500
SduI	GDGCHC	8 cut(s)	12, 1559, 1632, 1906, 2202, 3543, 4423, 4531
SfcI	CTRYAG	8 cut(s)	345, 941, 985, 1293, 1443, 1870, 3362, 3418
SfuI	TTCGAA	1 cut(s)	2318
SinI	GGWCC	1 cut(s)	648
SmiMI	CAYNNNNRTG	7 cut(s)	1179, 1696, 2193, 2493, 2784, 3762, 4272
SmlI	CTYRAG	3 cut(s)	718, 1823, 3622
SmoI	CTYRAG	3 cut(s)	718, 1823, 3622
SpeI	ACTAGT	2 cut(s)	1997, 3685
SphI	GCATGC	2 cut(s)	221, 2707
SsiI	CCGC	2 cut(s)	2965, 3966
SspI	AATATT	2 cut(s)	587, 2343
SspMI	CTAG	9 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 3075, 3686
SstI	GAGCTC	1 cut(s)	4531
StyD4I	CCNGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3829, 4498
StyI	CCWWGG	4 cut(s)	2445, 2468, 2843, 3782
TaiI	ACGT	7 cut(s)	327, 733, 2125, 2419, 3034, 3292, 4420
TaqI	TCGA	8 cut(s)	20, 28, 654, 1330, 1549, 2318, 3017, 4317
TaqII	GACCGA	3 cut(s)	636, 1728, 4418
TatI	WGTACW	1 cut(s)	4173
TauI	GCSGC	2 cut(s)	2967, 3969
TseFI	GTSAC	5 cut(s)	1192, 2005, 2760, 3162, 3596
Tsp45I	GTSAC	5 cut(s)	1192, 2005, 2760, 3162, 3596
Van91I	CCANNNNNTGG	3 cut(s)	1817, 2062, 3783
Vha464I	CTTAAG	1 cut(s)	1823
VneI	GTGCAC	4 cut(s)	1555, 1628, 3539, 4419
VpaK11BI	GGWCC	1 cut(s)	648
VspI	ATTAAT	1 cut(s)	4272
XagI	CCTNNNNNAGG	4 cut(s)	174, 3019, 3362, 4503
XmiI	GTMKAC	1 cut(s)	3909
XmnI	GAANNNNTTC	2 cut(s)	619, 4339
XspI	CTAG	9 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 3075, 3686
Zsp2I	ATGCAT	2 cut(s)	2614, 2705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.