Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000388.1

Orthogroup ID

OG0003021

Physical Location & Seq

Genomic Coordinates Forward (+)

99586 .. 107941

Gene Structure 8356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000388.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4563 bp

atggaagtgctcccttgttcgagcgttcgatgtgttgaaaaatctgactgccctcaacagagttcaggaacaactcctgtgaatggagaatctaactgccttgaacctgcaaagcaagtgcaagtaatagatcgtacagtagaaggcttattgccaaatgcgaaagggcctcaattaggaacacaaggtgtagttaaaggggcagttcatgaattgcatacctcagaaggatgtcggaatggatcttcaagtcttgattgtcaagtggagagccaaaagtcatctagtggttcgcatggttttgaatcttttgatgacgacgacgtaaatgcacagaattactctacagaaccttccttaatctctgacaatagtggtctgaaattagatagcagtgaaaatggacttccatacaacagtagggaaggagagtcatctcattcagactccacatggctagaatgtcatgaatcggtgccactgtgggtcaagtggagaggcaagtggcaggcaggaattcgttgcgcaagagctgactggcccctatcaactttgagagcaaaaccaactcatgacaggaagaaatattttgtgatattttttccccacacaagaaattattcttgggcagacatgctacttgttcggtccatcgatgaaattccacagcctattgcatataaaacacataatgctggtttgagaatggtagaagacttgagtgttgcacgtcggtttatcatgcaaaagttagctgttggaatgctgaatatagttgatcaatttcatactgaggctttaatagagactgctcgtaatgtggtggtctggaaggagtttgctatggaggcttctcgctgtaacggttattctgatctgggaaagatgcttctgaagctgcaaagtatgatttcgcagagctacataaatcataattggctacagaattcaaatcattcttgggtgcagaggtgtcagaatgcctgtagcgctgagactgttgaactactgaaggaggaattggttgagtctattctctggaatgaagtccagtctcttcggaatgcagcgttgcaacctactttgggttctgagtggagaacctggaagcatgaagttatgaaatggttttcaacctctcatcccatatctaatggtggggaatttccacagcacagtagtgatgcccctgtgaccccaagtcttcaagttagcaggaagaggcccaagcttgaagttcgccgtgcagaggcacatgtttcccaggtggaatctaggggttcagatgaagctatagccattgaaattgactctgagttctttaataatcgagaggctgtaaattctgctacattagcctcagaacccgataaagaagtaaatatgaaagatgttgctgcactgactggagatggtggtgttgctgataaatgggatgacgctgtagttgcaactggaaattctgtgtttatccaaagcaaagatgtggaaatgacaccggtcaatgatgtggctggtataaagtcttctgttcctgggactaaaaatcgacagtgcactgcttatattgaagccaaaggaaggcaatgtgtgagatgggcgaatgatggtgatgtttactgttgtgtgcacttgtcgtctcgtttcacgggtagctctacaaaatcagagggatctcactctatggatacaccaatgtgtgaaggaacaactgttcttggaactaaatgtaagcatcggtctctttatggctcttcattctgtaagaagcatagaccaaaaactgagagggaaacaatcataaatactccagagaatggacttaagagaaagtatgaggagaacatgtctagtttagataccatgaactgcagagagatggtattggtgggagatgttggtgctccactagaagtggatcctgttggaatcatggccggagatggctttaatggaagggggagcctatttgagaagtccgaacttcctgccaaaactagtaatgtgactgaagagatgcgttgcataggctctggtttgcaagatagcagcaaccattgtctggaaagtccaaaaaggcattcattatattgtgaaaaacacctcccaagctggctgaaacgtgctagaaatggtaagagtaggataatatcgaaggaagtatttgtagatcttttgaaggattgccactcacatgagcacaagttgcatatacataaagcgtgtgagcttttttacaagctctttaaaagtatattatctttaagaaatcctgtccctaaggatgttcagtttcagtgggctttatctgaagcttcgaagaatttggttgttggggaaatatttacaaagttggtttgcagtgaaaaggagagactcgtaagactttggggctttaatactgatgaagatacacgtgaggatgtatgtgttttgaactctgccatggaagaaccagctctgttgccttgggttgtggacgataaccatgatgatgaaagagccatcaagtgcaaaatttgctctgaggaatttatggatgaccaagcacttggaactcactggatggaaaatcataaaaaggaagctcaatggctctttagaggttatgcatgtgctatctgcctggattcttttactaataaaaaagttttggaaacgcatgtccaggacagacaccgtgtgcaatttgttgaacaatgcatgcttctccagtgcatcccttgtggcagccactttgggaacaatgaggagttatggtcacatgtgcttgtggtacatcctgatgatttcaggccctcaaaagctgttcaacatactctgtcagctgatgatggctctccaaggaagtttgagttgtgcaattcagcttctgtggagaatacctcacaaaatttagctaatgtccgaaagttcgtttgcaggttttgtggtttgaaatttgatttacttcccgatcttggccgccaccatcaagctgcccacatggggccaagtttagtcagttctcggccctcgaagagggggatacgttattatgcttatagattaaaatctgggagacttagccgtcctagattgaagaagagtttggcagcagcatcatataggatcaggaacagagcaaatgctactataaagaaacgcatccaagcgtccaagtcacttagcagtggaggaatggatatacagagtcaatcaactgaggcagtgagtcttggtaggttagcagaatcacattgttcagcagtagcaaggattttgttttctgagatgcagaaaacaaaacgtaggcccaacaacctggacattttatctgttgctcgctctgcttgctgcaagattagtcttgaagtcctgctgcagggaaaatatggaatcttgccacaacgcttgtatctgaaggcagctaagctctgcagtgagcataacattaaggtaagttggcatcaagagggtttcatttgtcctaaagggtgcagggatttcaacgctttgttgccgtctcctttgatacctcgtccaattggtactacggtgcacaaatctcaacctttatcagatccttctgaagaaaagtgggaggtggatgagagtcactatgttgttggttcaaatcacttgagccaaaggtctttgcagaaggctcatgtattatgtgatgatataagctttggccaagaactagtgccactggtctgtgtagccgacgaaggtcttttggattctcttcctgccaatgcaggtagttctactcatcaaaatgctggacattccatgccttgggagaactttacctatactgcaaagccattatttgatcaatcccctggactggatacagagagtttgcaattgcgttgttcctgcccacattctacatgctgtcctgaagcatgtgatcatgtctacctttttgataatgactatgataatgcgaaagacatctatgggaaacccatgtgcggcaggttcccctatgatgatagaggccgaattattttggaggaaggttacctcgtttatgaatgcaatcagatgtgcagctgcaatagaacgtgtcctaatagggtcttgcagaatggagtaagagtgaaattggaagtcttcaagacagagaaaaagggatgggcagtcagggcaggtgaagcaatcctgcgtggcacttttatttgcgagtacattggtgagattttagacgaaaatgaagcaaacaagaggctcaacaggtatgacagagatggttatggctatctttttgaaatcaatgctcatattaatgatatgagcagattggtagaaggacaggcacaatatgtaatcgactctacaaactttggaaatgtttcacgattcatcaatcatagctgttcaccaaaccttatgaattaccaagttcttgtggaaagcatggatagtgaacgtgcacatatcggtctatatgctaatcgtgatatagcgttgggtgaagaattaacatatgactatcggtataaactccttcctggagaaggatgtctgtgccattgtggagctcccagatgccgaggccggctctattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0005488 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016278 GO:0016279 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0032259 GO:0032268 GO:0033043 GO:0033044 GO:0034968 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051276 GO:0051570 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:0140110 GO:1900109 GO:1901363 GO:1901564 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SET zf-TRM13_CCCH

Protein Analysis

1520

Amino Acids

170.72

Weight (kDa)

6.64

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740
fragaria_vesca	FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350
malus_domestica	MD02G1157000.v1.1 MD15G1271600.v1.1
prunus_persica	Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1
pyrus_communis	pycom02g12410 pycom15g23560
rosa_chinensis	RchiOBHm_Chr2g0103021
rosa_laevigata	RLG00000017201
rosa_multiflora	Rmu_sc0000388.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139990
rosa_rugosa	Rorug02G0111400 Rorug02G0111400 Rorug02G0111500 Rorug02G0111500
rosa_samantha	Rh2AG159700 Rh2BG166200 Rh2CG166400 Rh2DG165100
rosa_wichuraiana	Rw2G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	4133
AasI	GACNNNNNNGTC	1 cut(s)	3069
Acc16I	TGCGCA	1 cut(s)	526
Acc36I	ACCTGC	5 cut(s)	115, 2913, 3734, 3960, 4133
AccB1I	GGYRCC	1 cut(s)	475
AccB7I	CCANNNNNTGG	3 cut(s)	1817, 2062, 3783
AccI	GTMKAC	1 cut(s)	3909
AciI	CCGC	2 cut(s)	2965, 3966
AclWI	GGATC	6 cut(s)	250, 1681, 1913, 1926, 3119, 3557
AcoI	YGGCCR	3 cut(s)	1935, 2962, 3676
AcuI	CTGAAG	7 cut(s)	914, 1031, 2031, 2331, 3422, 3591, 3912
AcvI	CACGTG	1 cut(s)	2417
AdeI	CACNNNGTG	2 cut(s)	188, 2683
AfaI	GTAC	4 cut(s)	136, 2778, 3532, 4181
AfeI	AGCGCT	1 cut(s)	991
AflII	CTTAAG	1 cut(s)	1823
AflIII	ACRYGT	5 cut(s)	1255, 1845, 2414, 2764, 4058
AgeI	ACCGGT	1 cut(s)	1498
AhdI	GACNNNNNGTC	1 cut(s)	1200
AhlI	ACTAGT	2 cut(s)	1997, 3685
AjiI	CACGTC	1 cut(s)	731
AjnI	CCWGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3829, 4504
AjuI	GAANNNNNNNTTGG	8 cut(s)	607, 639, 1004, 1036, 2065, 2097, 3074, 3106
AleI	CACNNNNGTG	2 cut(s)	1179, 1696
AloI	GAACNNNNNNTCC	2 cut(s)	1698, 1730
Alw21I	GWGCWC	8 cut(s)	12, 1559, 1632, 1906, 2202, 3543, 4429, 4537
Alw26I	GTCTC	8 cut(s)	800, 989, 1059, 1644, 1746, 2368, 3055, 3510
Alw44I	GTGCAC	4 cut(s)	1555, 1628, 3539, 4425
AlwI	GGATC	6 cut(s)	250, 1681, 1913, 1926, 3119, 3557
AlwNI	CAGNNNCTG	1 cut(s)	2873
Aor51HI	AGCGCT	1 cut(s)	991
ApaLI	GTGCAC	4 cut(s)	1555, 1628, 3539, 4425
AseI	ATTAAT	1 cut(s)	4278
AsiGI	ACCGGT	1 cut(s)	1498
Asp700I	GAANNNNTTC	2 cut(s)	619, 4345
AspLEI	GCGC	2 cut(s)	527, 992
AspS9I	GGNCC	8 cut(s)	167, 540, 648, 1224, 2796, 2990, 3012, 3294
AsuHPI	GGTGA	5 cut(s)	1622, 4157, 4199, 4365, 4478
AsuII	TTCGAA	1 cut(s)	2318
AvaII	GGWCC	1 cut(s)	648
AxyI	CCTNAGG	1 cut(s)	2280
BaeGI	GKGCMC	4 cut(s)	1559, 1632, 3543, 4429
BaeI	ACNNNNGTAYC	4 cut(s)	3380, 3413, 3522, 3555
BalI	TGGCCA	1 cut(s)	3678
BamHI	GGATCC	1 cut(s)	1918
BanI	GGYRCC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	4537
BarI	GAAGNNNNNNTAC	2 cut(s)	1510, 1542
BbrPI	CACGTG	1 cut(s)	2417
BbsI	GAAGAC	4 cut(s)	720, 1196, 1518, 4099
Bbv12I	GWGCWC	8 cut(s)	12, 1559, 1632, 1906, 2202, 3543, 4429, 4537
BceAI	ACGGC	3 cut(s)	1227, 3054, 3487
BcgI	CGANNNNNNTGC	4 cut(s)	311, 345, 1970, 2004
BciT130I	CCWGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4506
BciVI	GTATCC	3 cut(s)	1681, 3021, 3832
BclI	TGATCA	3 cut(s)	778, 3820, 3901
BcoDI	GTCTC	8 cut(s)	800, 989, 1059, 1644, 1746, 2368, 3055, 3510
BcuI	ACTAGT	2 cut(s)	1997, 3685
BfaI	CTAG	9 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 3075, 3686
BfmI	CTRYAG	8 cut(s)	345, 941, 985, 1293, 1443, 1870, 3362, 3418
BfoI	RGCGCY	1 cut(s)	993
BfrI	CTTAAG	1 cut(s)	1823
BfuAI	ACCTGC	5 cut(s)	115, 2913, 3734, 3960, 4133
BfuI	GTATCC	3 cut(s)	1681, 3021, 3832
BglII	AGATCT	1 cut(s)	2170
BlpI	GCTNAGC	1 cut(s)	3411
Bme1390I	CCNGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4506
Bme18I	GGWCC	1 cut(s)	648
BmeRI	GACNNNNNGTC	1 cut(s)	1200
BmgBI	CACGTC	1 cut(s)	731
BmgT120I	GGNCC	8 cut(s)	167, 540, 648, 1224, 2796, 2990, 3012, 3294
BmiI	GGNNCC	6 cut(s)	477, 542, 1920, 1964, 2991, 3974
BmrFI	CCNGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4506
BoxI	GACNNNNGTC	2 cut(s)	1499, 3714
BpiI	GAAGAC	4 cut(s)	720, 1196, 1518, 4099
BplI	GAGNNNNNCTC	3 cut(s)	2870, 2902, 4539
BpmI	CTGGAG	4 cut(s)	1428, 1794, 2696, 4527
Bpu1102I	GCTNAGC	1 cut(s)	3411
Bpu14I	TTCGAA	1 cut(s)	2318
BpuEI	CTTGAG	2 cut(s)	739, 3643
Bsa29I	ATCGAT	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	2417
BsaBI	GATNNNNATC	1 cut(s)	3052
BsaI	GGTCTC	1 cut(s)	1746
BsaJI	CCNNGG	8 cut(s)	1263, 1535, 2445, 2468, 2843, 3782, 3829, 4546
BsaWI	WCCGGW	1 cut(s)	1498
BsaXI	ACNNNNNCTCC	6 cut(s)	1832, 1862, 2744, 2774, 4077, 4107
Bse118I	RCCGGY	2 cut(s)	1498, 4551
Bse1I	ACTGG	8 cut(s)	542, 1051, 1411, 1459, 2567, 2713, 3699, 3840
Bse21I	CCTNAGG	1 cut(s)	2280
Bse3DI	GCAATG	1 cut(s)	1592
Bse8I	GATNNNNATC	1 cut(s)	3052
BseBI	CCWGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4506
BseCI	ATCGAT	1 cut(s)	654
BseDI	CCNNGG	8 cut(s)	1263, 1535, 2445, 2468, 2843, 3782, 3829, 4546
BseJI	GATNNNNATC	1 cut(s)	3052
BseMI	GCAATG	1 cut(s)	1592
BseNI	ACTGG	8 cut(s)	542, 1051, 1411, 1459, 2567, 2713, 3699, 3840
BseRI	GAGGAG	2 cut(s)	1853, 2765
BseSI	GKGCMC	4 cut(s)	1559, 1632, 3543, 4429
BsgI	GTGCAG	5 cut(s)	986, 1266, 1383, 3499, 4063
BshNI	GGYRCC	1 cut(s)	475
BshTI	ACCGGT	1 cut(s)	1498
BshVI	ATCGAT	1 cut(s)	654
BsiHKAI	GWGCWC	8 cut(s)	12, 1559, 1632, 1906, 2202, 3543, 4429, 4537
BsiSI	CCGG	3 cut(s)	1499, 1938, 4552
BslFI	GGGAC	2 cut(s)	1552, 2261
BsmAI	GTCTC	8 cut(s)	800, 989, 1059, 1644, 1746, 2368, 3055, 3510
BsmBI	CGTCTC	2 cut(s)	1644, 3510
BsmFI	GGGAC	2 cut(s)	1552, 2261
BsmI	GAATGC	5 cut(s)	768, 985, 1069, 2080, 4034
Bso31I	GGTCTC	1 cut(s)	1746
Bsp119I	TTCGAA	1 cut(s)	2318
Bsp1286I	GDGCHC	8 cut(s)	12, 1559, 1632, 1906, 2202, 3543, 4429, 4537
Bsp1720I	GCTNAGC	1 cut(s)	3411
Bsp19I	CCATGG	1 cut(s)	2445
BspACI	CCGC	2 cut(s)	2965, 3966
BspDI	ATCGAT	1 cut(s)	654
BspHI	TCATGA	3 cut(s)	208, 466, 571
BspLI	GGNNCC	6 cut(s)	477, 542, 1920, 1964, 2991, 3974
BspMAI	CTGCAG	3 cut(s)	1874, 3366, 3422
BspMI	ACCTGC	5 cut(s)	115, 2913, 3734, 3960, 4133
BspPI	GGATC	6 cut(s)	250, 1681, 1913, 1926, 3119, 3557
BspQI	GCTCTTC	1 cut(s)	1759
BspT104I	TTCGAA	1 cut(s)	2318
BspT107I	GGYRCC	1 cut(s)	475
BspTI	CTTAAG	1 cut(s)	1823
BspTNI	GGTCTC	1 cut(s)	1746
BsrDI	GCAATG	1 cut(s)	1592
BsrFI	RCCGGY	2 cut(s)	1498, 4551
BsrI	ACTGG	8 cut(s)	542, 1051, 1411, 1459, 2567, 2713, 3699, 3840
BssAI	RCCGGY	2 cut(s)	1498, 4551
BssECI	CCNNGG	8 cut(s)	1263, 1535, 2445, 2468, 2843, 3782, 3829, 4546
BssT1I	CCWWGG	4 cut(s)	2445, 2468, 2843, 3782
Bst2UI	CCWGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4506
Bst6I	CTCTTC	7 cut(s)	1062, 1214, 1759, 2007, 3014, 3080, 3735
BstAFI	CTTAAG	1 cut(s)	1823
BstAPI	GCANNNNNTGC	2 cut(s)	2206, 2520
BstBAI	YACGTR	1 cut(s)	2417
BstBI	TTCGAA	1 cut(s)	2318
BstC8I	GCNNGC	6 cut(s)	510, 2114, 2705, 3325, 3334, 4553
BstDSI	CCRYGG	1 cut(s)	2445
BstEII	GGTNACC	1 cut(s)	4013
BstENI	CCTNNNNNAGG	4 cut(s)	174, 3019, 3362, 4509
BstH2I	RGCGCY	1 cut(s)	993
BstHHI	GCGC	2 cut(s)	527, 992
BstMAI	GTCTC	8 cut(s)	800, 989, 1059, 1644, 1746, 2368, 3055, 3510
BstNI	CCWGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4506
BstNSI	RCATGY	9 cut(s)	637, 1259, 1849, 2616, 2666, 2707, 2768, 3885, 3900
BstPAI	GACNNNNGTC	2 cut(s)	1499, 3714
BstPI	GGTNACC	1 cut(s)	4013
BstSCI	CCNGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3829, 4504
BstSFI	CTRYAG	8 cut(s)	345, 941, 985, 1293, 1443, 1870, 3362, 3418
BstSLI	GKGCMC	4 cut(s)	1559, 1632, 3543, 4429
BstV2I	GAAGAC	4 cut(s)	720, 1196, 1518, 4099
BstX2I	RGATCY	5 cut(s)	242, 1673, 1918, 2170, 3562
BstXI	CCANNNNNNTGG	2 cut(s)	2552, 3304
BstYI	RGATCY	5 cut(s)	242, 1673, 1918, 2170, 3562
Bsu15I	ATCGAT	1 cut(s)	654
Bsu36I	CCTNAGG	1 cut(s)	2280
BsuI	GTATCC	3 cut(s)	1681, 3021, 3832
BsuTUI	ATCGAT	1 cut(s)	654
BtgI	CCRYGG	1 cut(s)	2445
BtrI	CACGTC	1 cut(s)	731
BtsI	GCAGTG	6 cut(s)	400, 1557, 2368, 3178, 3216, 3427
BveI	ACCTGC	5 cut(s)	115, 2913, 3734, 3960, 4133
Cac8I	GCNNGC	6 cut(s)	510, 2114, 2705, 3325, 3334, 4553
CaiI	CAGNNNCTG	1 cut(s)	2873
CciI	TCATGA	3 cut(s)	208, 466, 571
CfoI	GCGC	2 cut(s)	527, 992
Cfr10I	RCCGGY	2 cut(s)	1498, 4551
Cfr13I	GGNCC	8 cut(s)	167, 540, 648, 1224, 2796, 2990, 3012, 3294
ClaI	ATCGAT	1 cut(s)	654
CseI	GACGC	2 cut(s)	1448, 3144
Csp6I	GTAC	4 cut(s)	135, 2777, 3531, 4180
CspAI	ACCGGT	1 cut(s)	1498
CspCI	CAANNNNNGTGG	2 cut(s)	3375, 3410
CviQI	GTAC	4 cut(s)	135, 2777, 3531, 4180
DraI	TTTAAA	1 cut(s)	2248
DraIII	CACNNNGTG	2 cut(s)	188, 2683
DrdI	GACNNNNNNGTC	1 cut(s)	3069
DriI	GACNNNNNGTC	1 cut(s)	1200
DseDI	GACNNNNNNGTC	1 cut(s)	3069
EaeI	YGGCCR	3 cut(s)	1935, 2962, 3676
Eam1104I	CTCTTC	7 cut(s)	1062, 1214, 1759, 2007, 3014, 3080, 3735
Eam1105I	GACNNNNNGTC	1 cut(s)	1200
EarI	CTCTTC	7 cut(s)	1062, 1214, 1759, 2007, 3014, 3080, 3735
Ecl136II	GAGCTC	1 cut(s)	4535
Eco130I	CCWWGG	4 cut(s)	2445, 2468, 2843, 3782
Eco24I	GRGCYC	1 cut(s)	4537
Eco31I	GGTCTC	1 cut(s)	1746
Eco47I	GGWCC	1 cut(s)	648
Eco47III	AGCGCT	1 cut(s)	991
Eco53kI	GAGCTC	1 cut(s)	4535
Eco57I	CTGAAG	7 cut(s)	914, 1031, 2031, 2331, 3422, 3591, 3912
Eco72I	CACGTG	1 cut(s)	2417
Eco81I	CCTNAGG	1 cut(s)	2280
Eco91I	GGTNACC	1 cut(s)	4013
EcoICRI	GAGCTC	1 cut(s)	4535
EcoNI	CCTNNNNNAGG	4 cut(s)	174, 3019, 3362, 4509
EcoO109I	RGGNCCY	2 cut(s)	167, 2796
EcoO65I	GGTNACC	1 cut(s)	4013
EcoRI	GAATTC	2 cut(s)	516, 946
EcoRII	CCWGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3829, 4504
EcoT14I	CCWWGG	4 cut(s)	2445, 2468, 2843, 3782
EcoT22I	ATGCAT	2 cut(s)	2614, 2705
EcoT38I	GRGCYC	1 cut(s)	4537
ErhI	CCWWGG	4 cut(s)	2445, 2468, 2843, 3782
Esp3I	CGTCTC	2 cut(s)	1644, 3510
FaqI	GGGAC	2 cut(s)	1552, 2261
FauNDI	CATATG	1 cut(s)	4480
FbaI	TGATCA	3 cut(s)	778, 3820, 3901
FblI	GTMKAC	1 cut(s)	3909
FriOI	GRGCYC	1 cut(s)	4537
FspBI	CTAG	9 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 3075, 3686
FspI	TGCGCA	1 cut(s)	526
GlaI	GCGC	2 cut(s)	526, 991
GsuI	CTGGAG	4 cut(s)	1428, 1794, 2696, 4527
HaeII	RGCGCY	1 cut(s)	993
HapII	CCGG	3 cut(s)	1499, 1938, 4552
HgaI	GACGC	2 cut(s)	1448, 3144
HhaI	GCGC	2 cut(s)	527, 992
Hin6I	GCGC	2 cut(s)	525, 990
HinP1I	GCGC	2 cut(s)	525, 990
HindIII	AAGCTT	3 cut(s)	1229, 2313, 3670
HpaII	CCGG	3 cut(s)	1499, 1938, 4552
HphI	GGTGA	5 cut(s)	1622, 4157, 4199, 4365, 4478
Hpy166II	GTNNAC	9 cut(s)	1557, 1618, 1630, 2479, 3541, 3910, 4373, 4421, 4427
Hpy8I	GTNNAC	9 cut(s)	1557, 1618, 1630, 2479, 3541, 3910, 4373, 4421, 4427
Hpy99I	CGWCG	4 cut(s)	323, 326, 735, 3713
HpyCH4IV	ACGT	8 cut(s)	324, 730, 2122, 2416, 3031, 3289, 4058, 4423
HpySE526I	ACGT	8 cut(s)	324, 730, 2122, 2416, 3031, 3289, 4058, 4423
HspAI	GCGC	2 cut(s)	525, 990
KroI	GCCGGC	1 cut(s)	4551
KroNI	GCCGGC	1 cut(s)	4553
Ksp22I	TGATCA	3 cut(s)	778, 3820, 3901
LguI	GCTCTTC	1 cut(s)	1759
LmnI	GCTCC	5 cut(s)	15, 1909, 1962, 4532, 4540
MaeI	CTAG	9 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 3075, 3686
MaeII	ACGT	8 cut(s)	324, 730, 2122, 2416, 3031, 3289, 4058, 4423
MaeIII	GTNAC	7 cut(s)	860, 1192, 2005, 2760, 3162, 3596, 4013
MfeI	CAATTG	2 cut(s)	3525, 3854
MflI	RGATCY	5 cut(s)	242, 1673, 1918, 2170, 3562
MhlI	GDGCHC	8 cut(s)	12, 1559, 1632, 1906, 2202, 3543, 4429, 4537
MlsI	TGGCCA	1 cut(s)	3678
MluNI	TGGCCA	1 cut(s)	3678
MlyI	GAGTC	9 cut(s)	440, 440, 1037, 1304, 2370, 3202, 3223, 3604, 4319
MmeI	TCCRAC	3 cut(s)	215, 739, 1906
Mox20I	TGGCCA	1 cut(s)	3678
Mph1103I	ATGCAT	2 cut(s)	2614, 2705
MroNI	GCCGGC	1 cut(s)	4551
MroXI	GAANNNNTTC	2 cut(s)	619, 4345
MscI	TGGCCA	1 cut(s)	3678
MslI	CAYNNNNRTG	7 cut(s)	1179, 1696, 2193, 2493, 2784, 3762, 4278
Msp20I	TGGCCA	1 cut(s)	3678
MspA1I	CMGCKG	2 cut(s)	2828, 4047
MspCI	CTTAAG	1 cut(s)	1823
MspI	CCGG	3 cut(s)	1499, 1938, 4552
MspR9I	CCNGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4506
MunI	CAATTG	2 cut(s)	3525, 3854
Mva1269I	GAATGC	5 cut(s)	768, 985, 1069, 2080, 4034
MvaI	CCWGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4506
NaeI	GCCGGC	1 cut(s)	4553
NcoI	CCATGG	1 cut(s)	2445
NdeI	CATATG	1 cut(s)	4480
NgoMIV	GCCGGC	1 cut(s)	4551
NlaIV	GGNNCC	6 cut(s)	477, 542, 1920, 1964, 2991, 3974
NmeAIII	GCCGAG	1 cut(s)	2989
NmuCI	GTSAC	5 cut(s)	1192, 2005, 2760, 3162, 3596
NsbI	TGCGCA	1 cut(s)	526
NsiI	ATGCAT	2 cut(s)	2614, 2705
NspI	RCATGY	9 cut(s)	637, 1259, 1849, 2616, 2666, 2707, 2768, 3885, 3900
NspV	TTCGAA	1 cut(s)	2318
OliI	CACNNNNGTG	2 cut(s)	1179, 1696
PaeI	GCATGC	1 cut(s)	2707
PagI	TCATGA	3 cut(s)	208, 466, 571
PaqCI	CACCTGC	1 cut(s)	4133
PciI	ACATGT	3 cut(s)	1255, 1845, 2764
PciSI	GCTCTTC	1 cut(s)	1759
PctI	GAATGC	5 cut(s)	768, 985, 1069, 2080, 4034
PdiI	GCCGGC	1 cut(s)	4553
PdmI	GAANNNNTTC	2 cut(s)	619, 4345
PflMI	CCANNNNNTGG	3 cut(s)	1817, 2062, 3783
PfoI	TCCNGGA	2 cut(s)	2667, 4504
PinAI	ACCGGT	1 cut(s)	1498
PleI	GAGTC	9 cut(s)	439, 440, 1036, 1304, 2370, 3201, 3222, 3603, 4319
PmaCI	CACGTG	1 cut(s)	2417
PmlI	CACGTG	1 cut(s)	2417
PpsI	GAGTC	9 cut(s)	439, 440, 1036, 1304, 2370, 3201, 3222, 3603, 4319
Ppu21I	YACGTR	1 cut(s)	2417
PscI	ACATGT	3 cut(s)	1255, 1845, 2764
PshAI	GACNNNNGTC	2 cut(s)	1499, 3714
PshBI	ATTAAT	1 cut(s)	4278
Psp124BI	GAGCTC	1 cut(s)	4537
Psp6I	CCWGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3829, 4504
PspCI	CACGTG	1 cut(s)	2417
PspEI	GGTNACC	1 cut(s)	4013
PspGI	CCWGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3829, 4504
PspN4I	GGNNCC	6 cut(s)	477, 542, 1920, 1964, 2991, 3974
PspPI	GGNCC	8 cut(s)	167, 540, 648, 1224, 2796, 2990, 3012, 3294
PstI	CTGCAG	3 cut(s)	1874, 3366, 3422
PstNI	CAGNNNCTG	1 cut(s)	2873
PsuI	RGATCY	5 cut(s)	242, 1673, 1918, 2170, 3562
PvuII	CAGCTG	2 cut(s)	2828, 4047
RsaI	GTAC	4 cut(s)	136, 2778, 3532, 4181
RsaNI	GTAC	4 cut(s)	135, 2777, 3531, 4180
RseI	CAYNNNNRTG	7 cut(s)	1179, 1696, 2193, 2493, 2784, 3762, 4278
SacI	GAGCTC	1 cut(s)	4537
SapI	GCTCTTC	1 cut(s)	1759
Sau96I	GGNCC	8 cut(s)	167, 540, 648, 1224, 2796, 2990, 3012, 3294
SchI	GAGTC	9 cut(s)	440, 440, 1037, 1304, 2370, 3202, 3223, 3604, 4319
ScrFI	CCNGG	8 cut(s)	1105, 1265, 1536, 2627, 2669, 3305, 3831, 4506
SduI	GDGCHC	8 cut(s)	12, 1559, 1632, 1906, 2202, 3543, 4429, 4537
SfcI	CTRYAG	8 cut(s)	345, 941, 985, 1293, 1443, 1870, 3362, 3418
SfuI	TTCGAA	1 cut(s)	2318
SinI	GGWCC	1 cut(s)	648
SmiMI	CAYNNNNRTG	7 cut(s)	1179, 1696, 2193, 2493, 2784, 3762, 4278
SmlI	CTYRAG	3 cut(s)	718, 1823, 3622
SmoI	CTYRAG	3 cut(s)	718, 1823, 3622
SpeI	ACTAGT	2 cut(s)	1997, 3685
SphI	GCATGC	1 cut(s)	2707
SsiI	CCGC	2 cut(s)	2965, 3966
SspI	AATATT	2 cut(s)	587, 2343
SspMI	CTAG	9 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 3075, 3686
SstI	GAGCTC	1 cut(s)	4537
StyD4I	CCNGG	8 cut(s)	1103, 1263, 1534, 2625, 2667, 3303, 3829, 4504
StyI	CCWWGG	4 cut(s)	2445, 2468, 2843, 3782
TaiI	ACGT	8 cut(s)	327, 733, 2125, 2419, 3034, 3292, 4061, 4426
TaqI	TCGA	9 cut(s)	20, 28, 654, 1330, 1549, 2153, 2318, 3017, 4323
TaqII	GACCGA	3 cut(s)	636, 1728, 4424
TatI	WGTACW	1 cut(s)	4179
TauI	GCSGC	2 cut(s)	2967, 3969
TseFI	GTSAC	5 cut(s)	1192, 2005, 2760, 3162, 3596
Tsp45I	GTSAC	5 cut(s)	1192, 2005, 2760, 3162, 3596
Van91I	CCANNNNNTGG	3 cut(s)	1817, 2062, 3783
Vha464I	CTTAAG	1 cut(s)	1823
VneI	GTGCAC	4 cut(s)	1555, 1628, 3539, 4425
VpaK11BI	GGWCC	1 cut(s)	648
VspI	ATTAAT	1 cut(s)	4278
XagI	CCTNNNNNAGG	4 cut(s)	174, 3019, 3362, 4509
XceI	RCATGY	9 cut(s)	637, 1259, 1849, 2616, 2666, 2707, 2768, 3885, 3900
XmiI	GTMKAC	1 cut(s)	3909
XmnI	GAANNNNTTC	2 cut(s)	619, 4345
XspI	CTAG	9 cut(s)	285, 458, 1275, 1851, 1910, 1998, 2127, 3075, 3686
Zsp2I	ATGCAT	2 cut(s)	2614, 2705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.