Rroxscaffold_2G00140010

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006702
Physical Location & Seq
Forward (+)
78259173 .. 78263476
4304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00140010.1

Sequence Viewer

Length: 1401 bp
ATGAAAAGAAGCCAACTTTCGGGCCATCTAGATCAGTTTCTGATGGTCAAAGGACTTTTTGGTCCGGAGGCGCCAGAGGCACCTGCCCTCGGTGCATCTTTGGTTGCAGAGAGAGTTCCGAGGCCCAAAGTCGAAAATTTGCCGAGGAAGGTGGCAATTGAGTTTGGTGAGCCTGGAACTAGTGATATGAAGGTGATTTTACTTGGGAAGCAGGGATTTTGTGTGAAGTTGAGTGTTCACAAGAATGTTCTAGTGGAGAATAGCAACTTTTTCGCTGACAAACTTGCTGAACAACAGTCTACTTCGTCGTGCCTTGAAATTGAAGAGTGCGAGGATGTTGAAATATATGTTGAAACTGTTGGGCTGATGTACTGCAAAGAAATGAGGCAACGGCTGATGAAGCAAAGCGTTTCCCGTGTACTCCGAATTCTGAAGATTGCAGAAGTGCTTGGCTTCAACTCGTGCATGCAGTCATGTTTAGAATACTTGGAAGCAGTCCCGTGGGTTGGAGATGAAGAAGAAGAAAAGGTGGTCTCATCGGTCTTGCGCCTACAGAATGAAGGTATTGGGGTCAGTCCAGTATTAAAACGAGTCTCCTCCGACGTTTCTAAAGCCCCAAAGGACACACTTTCCCACATAATTGGACTTGTTCTTGGAAGCAATGAGGAGAGAGGCAGGCGCGAAATGAAATCTGTAGTGCTCAAGCTCCTTAGGGAGAATAACAGTGTCTCAAGCTCTTCCAGTCCATCCGATGTCTGCAATCAAACAATTTATGACTCCTGCAGAAACTGTGCAAGTTTACTACTGTCGCTGTTCAAGCAGGCAGCAGAACCAGAGTCTCCCGAAAAATCTGTGGACAACAAAGACCCTCTGGTAAAGCAAATAGCTTTGGCGTCTGACAACCTCTCATGGTTGCTTGATATCTTGGCTGACAGGCAAGCGGCAGATGAATTTGCAGTAATGTGGGCTGGCCAGCAAGAATTGGCAGCCTTGCATATGAAGCTACCTATTGTGTCTCGTTACCATGTTAGCATTATTACAGCAAGGCTGTTTGTTGGAATTGGAAAAGGGGAGCTGCTACCGTCGAAGGATACGCGTCAACTGTTGCTACAAACATGGTTACAACCACTGATCAATGACTACAATTGGCTGCAACATGGATGTCGGTCATTTGACCGAAAGGTTGTGGAAGAAGGGATCGGTAGGACAATTCTCACTCTGCCTCTAGAGGACCAGCAAAGTATTATGCTTTCTTGGTTGGGAAGTTTTCTCAAGTCTGGTGATAGCTGCCCAAATCTTCAGAAGGCCTTTGAAGTCTGGTGGAGGAGAACTTTTGTTAGACCATATGTGGAAGGACAACAAGGTAATTCACTCCAGTCAGATAGCTCAATGACATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB

Protein Analysis

466

Amino Acids

52.03

Weight (kDa)

5.74

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB-POZ_ANK-like PF25553 211 - 447 9.4e-63 BTB/POZ Ankyrin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 91
AasI GACNNNNNNGTC 1 cut(s) 60
Acc36I ACCTGC 1 cut(s) 91
AccB1I GGYRCC 2 cut(s) 70, 79
AccI GTMKAC 1 cut(s) 299
AccII CGCG 2 cut(s) 681, 1096
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 1 cut(s) 941
AclWI GGATC 1 cut(s) 1205
AcoI YGGCCR 1 cut(s) 970
AcsI RAATTY 3 cut(s) 136, 426, 950
AcuI CTGAAG 2 cut(s) 452, 1283
AcyI GRCGYC 2 cut(s) 71, 893
AfaI GTAC 2 cut(s) 371, 420
AfiI CCNNNNNNNGG 3 cut(s) 19, 89, 506
AflIII ACRYGT 1 cut(s) 1094
AgsI TTSAA 7 cut(s) 317, 323, 341, 353, 457, 817, 1313
AhlI ACTAGT 1 cut(s) 179
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 7 cut(s) 706, 735, 887, 1003, 1075, 1287, 1386
AluI AGCT 7 cut(s) 706, 735, 887, 1003, 1075, 1287, 1386
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 5 cut(s) 538, 598, 733, 843, 1020
AlwI GGATC 1 cut(s) 1205
AlwNI CAGNNNCTG 2 cut(s) 40, 789
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 4 cut(s) 22, 122, 970, 1305
ApeKI GCWGC 5 cut(s) 824, 986, 1075, 1150, 1287
ApoI RAATTY 3 cut(s) 136, 426, 950
AspLEI GCGC 3 cut(s) 73, 549, 681
AspS9I GGNCC 4 cut(s) 22, 62, 123, 1231
AsuHPI GGTGA 3 cut(s) 179, 205, 1292
AvaII GGWCC 2 cut(s) 62, 1231
AxyI CCTNAGG 1 cut(s) 710
BalI TGGCCA 1 cut(s) 972
BanI GGYRCC 2 cut(s) 70, 79
BauI CACGAG 1 cut(s) 460
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 5 cut(s) 836, 998, 1062, 1137, 1274
BccI CCATC 3 cut(s) 33, 37, 754
BceAI ACGGC 1 cut(s) 407
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BciT130I CCWGG 1 cut(s) 174
BciVI GTATCC 1 cut(s) 1084
BclI TGATCA 1 cut(s) 1131
BcoDI GTCTC 5 cut(s) 538, 598, 733, 843, 1020
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 5 cut(s) 29, 180, 251, 1226, 1399
BfmI CTRYAG 3 cut(s) 551, 693, 781
BfoI RGCGCY 1 cut(s) 74
BfuAI ACCTGC 1 cut(s) 91
BfuI GTATCC 1 cut(s) 1084
BisI GCNGC 6 cut(s) 825, 942, 987, 1076, 1151, 1288
BlsI GCNGC 6 cut(s) 826, 943, 988, 1077, 1152, 1289
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 2 cut(s) 62, 1231
BmgT120I GGNCC 4 cut(s) 22, 62, 123, 1231
BmiI GGNNCC 2 cut(s) 72, 81
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 1358
BpuEI CTTGAG 3 cut(s) 686, 715, 1256
BsaHI GRCGYC 2 cut(s) 71, 893
BsaI GGTCTC 1 cut(s) 538
BsaJI CCNNGG 4 cut(s) 88, 119, 143, 500
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 89, 506
Bse1I ACTGG 3 cut(s) 578, 741, 1375
Bse21I CCTNAGG 1 cut(s) 710
Bse3DI GCAATG 1 cut(s) 667
BseAI TCCGGA 1 cut(s) 64
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 4 cut(s) 88, 119, 143, 500
BseGI GGATG 4 cut(s) 340, 746, 1166, 1394
BseLI CCNNNNNNNGG 3 cut(s) 19, 89, 506
BseMI GCAATG 1 cut(s) 667
BseNI ACTGG 3 cut(s) 578, 741, 1375
BseRI GAGGAG 3 cut(s) 586, 680, 1339
BseXI GCAGC 5 cut(s) 836, 998, 1062, 1137, 1274
Bsh1236I CGCG 2 cut(s) 681, 1096
BshFI GGCC 4 cut(s) 24, 124, 972, 1307
BshNI GGYRCC 2 cut(s) 70, 79
BsiHKAI GWGCWC 1 cut(s) 702
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 3 cut(s) 19, 89, 506
BsmAI GTCTC 5 cut(s) 538, 598, 733, 843, 1020
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 4 cut(s) 24, 124, 972, 1307
Bso31I GGTCTC 1 cut(s) 538
Bsp1286I GDGCHC 1 cut(s) 702
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 3 cut(s) 31, 1131, 1197
BspACI CCGC 1 cut(s) 941
BspANI GGCC 4 cut(s) 24, 124, 972, 1307
BspEI TCCGGA 1 cut(s) 64
BspFNI CGCG 2 cut(s) 681, 1096
BspLI GGNNCC 2 cut(s) 72, 81
BspMAI CTGCAG 1 cut(s) 785
BspMI ACCTGC 1 cut(s) 91
BspPI GGATC 1 cut(s) 1205
BspQI GCTCTTC 1 cut(s) 742
BspT107I GGYRCC 2 cut(s) 70, 79
BspTNI GGTCTC 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 667
BsrI ACTGG 3 cut(s) 578, 741, 1375
BssECI CCNNGG 4 cut(s) 88, 119, 143, 500
BssMI GATC 3 cut(s) 31, 1131, 1197
BssNI GRCGYC 2 cut(s) 71, 893
BssSI CACGAG 1 cut(s) 460
Bst2BI CACGAG 1 cut(s) 460
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 7 cut(s) 297, 358, 725, 791, 807, 1083, 1104
Bst6I CTCTTC 2 cut(s) 318, 742
BstACI GRCGYC 2 cut(s) 71, 893
BstC8I GCNNGC 6 cut(s) 467, 677, 822, 939, 970, 974
BstDEI CTNAG 1 cut(s) 710
BstDSI CCRYGG 1 cut(s) 500
BstF5I GGATG 4 cut(s) 340, 746, 1166, 1394
BstFNI CGCG 2 cut(s) 681, 1096
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 3 cut(s) 73, 549, 681
BstKTI GATC 3 cut(s) 34, 1134, 1200
BstMAI GTCTC 5 cut(s) 538, 598, 733, 843, 1020
BstMBI GATC 3 cut(s) 31, 1131, 1197
BstMWI GCNNNNNNNGC 5 cut(s) 77, 92, 400, 817, 1000
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 172
BstSFI CTRYAG 3 cut(s) 551, 693, 781
BstUI CGCG 2 cut(s) 681, 1096
BstV1I GCAGC 5 cut(s) 836, 998, 1062, 1137, 1274
BstXI CCANNNNNNTGG 1 cut(s) 641
Bsu36I CCTNAGG 1 cut(s) 710
BsuI GTATCC 1 cut(s) 1084
BsuRI GGCC 4 cut(s) 24, 124, 972, 1307
BtgI CCRYGG 1 cut(s) 500
BtsCI GGATG 4 cut(s) 340, 746, 1166, 1394
BtsIMutI CAGTG 2 cut(s) 730, 1127
BveI ACCTGC 1 cut(s) 91
Cac8I GCNNGC 6 cut(s) 467, 677, 822, 939, 970, 974
CaiI CAGNNNCTG 2 cut(s) 40, 789
CfoI GCGC 3 cut(s) 73, 549, 681
Cfr13I GGNCC 4 cut(s) 22, 62, 123, 1231
CseI GACGC 2 cut(s) 882, 1085
Csp6I GTAC 2 cut(s) 370, 419
CviAII CATG 6 cut(s) 466, 474, 909, 1025, 1116, 1157
CviQI GTAC 2 cut(s) 370, 419
DdeI CTNAG 1 cut(s) 710
DinI GGCGCC 1 cut(s) 72
DpnI GATC 3 cut(s) 33, 1133, 1199
DpnII GATC 3 cut(s) 31, 1131, 1197
DrdI GACNNNNNNGTC 1 cut(s) 60
DseDI GACNNNNNNGTC 1 cut(s) 60
EaeI YGGCCR 1 cut(s) 970
Eam1104I CTCTTC 2 cut(s) 318, 742
EarI CTCTTC 2 cut(s) 318, 742
Eco147I AGGCCT 1 cut(s) 1307
Eco31I GGTCTC 1 cut(s) 538
Eco32I GATATC 1 cut(s) 922
Eco47I GGWCC 2 cut(s) 62, 1231
Eco57I CTGAAG 2 cut(s) 452, 1283
Eco81I CCTNAGG 1 cut(s) 710
EcoRI GAATTC 1 cut(s) 426
EcoRII CCWGG 1 cut(s) 172
EcoRV GATATC 1 cut(s) 922
EgeI GGCGCC 1 cut(s) 72
EheI GGCGCC 1 cut(s) 72
FaeI CATG 6 cut(s) 469, 477, 912, 1028, 1119, 1160
FaqI GGGAC 1 cut(s) 482
FatI CATG 6 cut(s) 465, 473, 908, 1024, 1115, 1156
FauNDI CATATG 2 cut(s) 996, 1345
FbaI TGATCA 1 cut(s) 1131
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 6 cut(s) 825, 942, 987, 1076, 1151, 1288
FokI GGATG 4 cut(s) 347, 733, 1173, 1381
Fsp4HI GCNGC 6 cut(s) 825, 942, 987, 1076, 1151, 1288
FspBI CTAG 5 cut(s) 29, 180, 251, 1226, 1399
GlaI GCGC 3 cut(s) 72, 548, 680
GluI GCNGC 6 cut(s) 825, 942, 987, 1076, 1151, 1288
GsuI CTGGAG 1 cut(s) 1358
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 4 cut(s) 24, 124, 972, 1307
HapII CCGG 1 cut(s) 65
HgaI GACGC 2 cut(s) 882, 1085
HhaI GCGC 3 cut(s) 73, 549, 681
Hin1I GRCGYC 2 cut(s) 71, 893
Hin1II CATG 6 cut(s) 469, 477, 912, 1028, 1119, 1160
Hin6I GCGC 3 cut(s) 71, 547, 679
HinP1I GCGC 3 cut(s) 71, 547, 679
HincII GTYRAC 1 cut(s) 1100
HindII GTYRAC 1 cut(s) 1100
HinfI GANTC 3 cut(s) 591, 776, 836
HpaII CCGG 1 cut(s) 65
HphI GGTGA 3 cut(s) 179, 205, 1292
Hpy166II GTNNAC 6 cut(s) 238, 300, 419, 800, 856, 1100
Hpy188I TCNGA 9 cut(s) 42, 120, 425, 432, 601, 751, 898, 1302, 1381
Hpy188III TCNNGA 4 cut(s) 29, 65, 842, 1226
Hpy8I GTNNAC 6 cut(s) 238, 300, 419, 800, 856, 1100
Hpy99I CGWCG 3 cut(s) 310, 605, 1087
HpyAV CCTTC 7 cut(s) 142, 184, 554, 1081, 1187, 1297, 1346
HpyCH4III ACNGT 7 cut(s) 297, 358, 725, 791, 807, 1083, 1104
HpyCH4IV ACGT 1 cut(s) 603
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 92, 400, 817, 1000
HpyF3I CTNAG 1 cut(s) 710
HpySE526I ACGT 1 cut(s) 603
Hsp92I GRCGYC 2 cut(s) 71, 893
Hsp92II CATG 6 cut(s) 469, 477, 912, 1028, 1119, 1160
HspAI GCGC 3 cut(s) 71, 547, 679
KasI GGCGCC 1 cut(s) 70
Kpn2I TCCGGA 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 1131
Kzo9I GATC 3 cut(s) 31, 1131, 1197
LguI GCTCTTC 1 cut(s) 742
LmnI GCTCC 2 cut(s) 711, 1072
Lsp1109I GCAGC 5 cut(s) 836, 998, 1062, 1137, 1274
LweI GCATC 1 cut(s) 104
MaeI CTAG 5 cut(s) 29, 180, 251, 1226, 1399
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 2 cut(s) 1019, 1119
MalI GATC 3 cut(s) 33, 1133, 1199
MboI GATC 3 cut(s) 31, 1131, 1197
MboII GAAGA 8 cut(s) 335, 445, 527, 530, 533, 729, 1202, 1289
MfeI CAATTG 2 cut(s) 156, 1144
MhlI GDGCHC 1 cut(s) 702
MlsI TGGCCA 1 cut(s) 972
MluI ACGCGT 1 cut(s) 1094
MluNI TGGCCA 1 cut(s) 972
Mly113I GGCGCC 1 cut(s) 71
MlyI GAGTC 3 cut(s) 600, 770, 845
MmeI TCCRAC 3 cut(s) 487, 624, 1036
Mox20I TGGCCA 1 cut(s) 972
MroI TCCGGA 1 cut(s) 64
MscI TGGCCA 1 cut(s) 972
MseI TTAA 1 cut(s) 584
MslI CAYNNNNRTG 1 cut(s) 243
Msp20I TGGCCA 1 cut(s) 972
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 174
MunI CAATTG 2 cut(s) 156, 1144
MvaI CCWGG 1 cut(s) 174
MvnI CGCG 2 cut(s) 681, 1096
MwoI GCNNNNNNNGC 5 cut(s) 77, 92, 400, 817, 1000
NarI GGCGCC 1 cut(s) 71
NdeI CATATG 2 cut(s) 996, 1345
NdeII GATC 3 cut(s) 31, 1131, 1197
NlaIII CATG 6 cut(s) 469, 477, 912, 1028, 1119, 1160
NlaIV GGNNCC 2 cut(s) 72, 81
NmeAIII GCCGAG 1 cut(s) 168
NspI RCATGY 1 cut(s) 469
PaeI GCATGC 1 cut(s) 469
PaqCI CACCTGC 1 cut(s) 91
PceI AGGCCT 1 cut(s) 1307
PciSI GCTCTTC 1 cut(s) 742
PkrI GCNGC 6 cut(s) 826, 943, 988, 1077, 1152, 1289
PleI GAGTC 3 cut(s) 599, 770, 844
PluTI GGCGCC 1 cut(s) 74
PpsI GAGTC 3 cut(s) 599, 770, 844
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 72, 81
PspPI GGNCC 4 cut(s) 22, 62, 123, 1231
PstI CTGCAG 1 cut(s) 785
PstNI CAGNNNCTG 2 cut(s) 40, 789
RsaI GTAC 2 cut(s) 371, 420
RsaNI GTAC 2 cut(s) 370, 419
RseI CAYNNNNRTG 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 742
SaqAI TTAA 1 cut(s) 584
SatI GCNGC 6 cut(s) 825, 942, 987, 1076, 1151, 1288
Sau3AI GATC 3 cut(s) 31, 1131, 1197
Sau96I GGNCC 4 cut(s) 22, 62, 123, 1231
SchI GAGTC 3 cut(s) 600, 770, 845
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 1 cut(s) 702
SfaNI GCATC 1 cut(s) 104
SfcI CTRYAG 3 cut(s) 551, 693, 781
SfoI GGCGCC 1 cut(s) 72
SinI GGWCC 2 cut(s) 62, 1231
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 3 cut(s) 701, 730, 1271
SmoI CTYRAG 3 cut(s) 701, 730, 1271
SpeI ACTAGT 1 cut(s) 179
SphI GCATGC 1 cut(s) 469
SseBI AGGCCT 1 cut(s) 1307
SsiI CCGC 1 cut(s) 941
SspDI GGCGCC 1 cut(s) 70
SspMI CTAG 5 cut(s) 29, 180, 251, 1226, 1399
StuI AGGCCT 1 cut(s) 1307
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 7 cut(s) 297, 358, 725, 791, 807, 1083, 1104
TaiI ACGT 1 cut(s) 606
TaqI TCGA 2 cut(s) 132, 1085
TaqII GACCGA 3 cut(s) 529, 1155, 1191
TatI WGTACW 2 cut(s) 369, 418
TauI GCSGC 1 cut(s) 944
Tru1I TTAA 1 cut(s) 584
Tru9I TTAA 1 cut(s) 584
TscAI CASTG 2 cut(s) 730, 1134
TseI GCWGC 5 cut(s) 824, 986, 1075, 1150, 1287
TspDTI ATGAA 8 cut(s) 17, 203, 413, 528, 573, 701, 963, 1013
TspRI CASTG 2 cut(s) 730, 1134
VpaK11BI GGWCC 2 cut(s) 62, 1231
XapI RAATTY 3 cut(s) 136, 426, 950
XbaI TCTAGA 2 cut(s) 28, 1225
XceI RCATGY 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 299
XspI CTAG 5 cut(s) 29, 180, 251, 1226, 1399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.