Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013223

Physical Location & Seq

Genomic Coordinates Reverse (-)

18890874 .. 18892508

Gene Structure 1635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCAACTTCTCTCCAAGCCGCCGCAACTTTTCTTCAACCGGCGAAGATTGCCGCTTCTCCTTCTCGTAATGTCCATCTCCGATCAAACCAAACCGTGGGCAAGTCCTTTGGGTTAGACTCTTCACAAGCTAGGCTCACGTGCTCTCTCCACTCTGACCTCAAAGACTTCGCTGGAAAATGCTCCGACGCCGCCAAGATCGCCGGTTTTGCTCTAGCCACCTCTGCTCTCGTTGTCTCGGGGGCCGGTGCGGAGGGAGCACCAAAGAGGCTAACGTACGACGAGATACAGAGCAAGACTTACATGGAGGTAAAGGGTACCGGTACGGCAAACCAGTGTCCAACTATCGATGGTGGCTCTGAGACATTCTCGTTCAAAGCTGGTAAGTACACAGGCAAGAAGTTCTGCTTCGAGCCCACTTCCTTCACCGTCAAGGCAGATAGCGTCAGCAAGAATGCACCGCCGGATTTCCAAAACACCAAGCTCATGACCCGTCTCACTTACACACTCGATGAGATCGAAGGACCCTTCGAGGTTGGTTCAGACGGAAGCGTGAAGTTCAAGGAAGAAGATGGTATCGATTACGCAGCAGTCACAGTCCAGCTTCCGGGAGGAGAACGCGTGCCGTTCCTCTTCACGGTTAAGCAGCTCGAGGCTTCAGGGAAACCCGAAAGCTTCAGTGGCAAGTTCTTAGTTCCATCGTACCGTGGCTCGTCCTTTTTGGACCCAAAGGGTCGTGGTGGATCCACTGGGTACGATAATGCAGTGGCTTTGCCTGCCGGAGGCAGAGGAGACGAGGAAGAGCTATCCAAGGAAAACGTCAAGAACACGGCGGCTTCCGTCGGAGAGATCACTTTGAAGATCACAAAGAGCAAACCGGAGACAGGTGAAGTGATCGGAGTGTTCGAGAGTCTTCAGCCATCGGATACTGACTTGGGTGCTAAGGTACCAAAAGATGTGAAGATCCAAGGGGTTTGGTACGGTCAGATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0009654 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0010207 GO:0010242 GO:0010287 GO:0015979 GO:0016020 GO:0016043 GO:0016491 GO:0019220 GO:0019222 GO:0019684 GO:0022607 GO:0031323 GO:0031324 GO:0031399 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0032268 GO:0032991 GO:0034357 GO:0034622 GO:0035303 GO:0035304 GO:0042548 GO:0042549 GO:0042651 GO:0042742 GO:0043155 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0060255 GO:0065003 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0098796 GO:1901363 GO:1902494 GO:1905156 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

MSP

Protein Analysis

331

Amino Acids

35.02

Weight (kDa)

5.92

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MSP	PF01716	98 - 330	1.6e-96	Manganese-stabilising protein / photosystem II polypeptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50820 AT5G66570
fragaria_vesca	FvH4_1g14430
malus_domestica	MD02G1157800.v1.1 MD15G1272500.v1.1
prunus_persica	Prupe.7G145900_v2.0.a1
pyrus_communis	pycom02g12470 pycom15g23610
rosa_chinensis	RchiOBHm_Chr2g0103161
rosa_laevigata	RLG00000017214
rosa_multiflora	Rmu_sc0000388.1_g000004
rosa_roxburghii	Rroxscaffold_2G00139880
rosa_rugosa	Rorug02G0112200
rosa_samantha	Rh2AG161000 Rh2BG167700 Rh2CG168000 Rh2DG166600
rosa_wichuraiana	Rw2G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	317, 946
AccB1I	GGYRCC	2 cut(s)	317, 946
AccB7I	CCANNNNNTGG	1 cut(s)	97
AccII	CGCG	1 cut(s)	621
AciI	CCGC	7 cut(s)	21, 24, 54, 192, 251, 461, 833
AclWI	GGATC	3 cut(s)	738, 751, 958
AcuI	CTGAAG	3 cut(s)	642, 661, 899
AcvI	CACGTG	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	8 cut(s)	278, 319, 325, 389, 704, 755, 948, 980
AfiI	CCNNNNNNNGG	5 cut(s)	97, 607, 637, 782, 884
AflIII	ACRYGT	1 cut(s)	619
AgeI	ACCGGT	1 cut(s)	320
AgsI	TTSAA	4 cut(s)	38, 376, 562, 859
AluBI	AGCT	7 cut(s)	131, 380, 484, 604, 649, 675, 805
AluI	AGCT	7 cut(s)	131, 380, 484, 604, 649, 675, 805
Alw21I	GWGCWC	2 cut(s)	146, 262
Alw26I	GTCTC	5 cut(s)	241, 356, 500, 786, 875
AlwI	GGATC	3 cut(s)	738, 751, 958
Ama87I	CYCGRG	2 cut(s)	238, 650
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	2 cut(s)	587, 646
AsiGI	ACCGGT	1 cut(s)	320
Asp718I	GGTACC	2 cut(s)	317, 946
AspS9I	GGNCC	3 cut(s)	243, 524, 724
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	2 cut(s)	418, 899
AvaI	CYCGRG	2 cut(s)	238, 650
AvaII	GGWCC	2 cut(s)	524, 724
BamHI	GGATCC	1 cut(s)	743
BanI	GGYRCC	2 cut(s)	317, 946
BanII	GRGCYC	1 cut(s)	417
BbrPI	CACGTG	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	905
Bbv12I	GWGCWC	2 cut(s)	146, 262
BbvI	GCAGC	2 cut(s)	599, 658
BccI	CCATC	5 cut(s)	84, 344, 566, 706, 928
BceAI	ACGGC	3 cut(s)	342, 610, 846
BciVI	GTATCC	1 cut(s)	919
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	5 cut(s)	241, 356, 500, 786, 875
BfaI	CTAG	2 cut(s)	132, 215
BfuI	GTATCC	1 cut(s)	919
BisI	GCNGC	7 cut(s)	21, 24, 54, 192, 588, 647, 834
BlsI	GCNGC	7 cut(s)	22, 25, 55, 193, 589, 648, 835
Bme1390I	CCNGG	1 cut(s)	609
Bme18I	GGWCC	2 cut(s)	524, 724
BmeT110I	CYCGRG	2 cut(s)	238, 650
BmgT120I	GGNCC	3 cut(s)	243, 524, 724
BmiI	GGNNCC	6 cut(s)	244, 319, 526, 726, 745, 948
BmrFI	CCNGG	1 cut(s)	609
BmrI	ACTGGG	1 cut(s)	759
BmuI	ACTGGG	1 cut(s)	759
BpiI	GAAGAC	1 cut(s)	905
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
Bpu10I	CCTNAGC	1 cut(s)	942
BpuMI	CCSGG	1 cut(s)	609
Bsa29I	ATCGAT	2 cut(s)	348, 579
BsaAI	YACGTR	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	4 cut(s)	96, 706, 810, 967
BsaWI	WCCGGW	2 cut(s)	320, 877
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 607, 637, 782, 884
Bse118I	RCCGGY	4 cut(s)	40, 203, 245, 320
Bse1I	ACTGG	2 cut(s)	334, 754
BseCI	ATCGAT	2 cut(s)	348, 579
BseDI	CCNNGG	4 cut(s)	96, 706, 810, 967
BseLI	CCNNNNNNNGG	5 cut(s)	97, 607, 637, 782, 884
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	334, 754
BseRI	GAGGAG	2 cut(s)	627, 804
BseXI	GCAGC	2 cut(s)	599, 658
Bsh1236I	CGCG	1 cut(s)	621
BshFI	GGCC	1 cut(s)	245
BshNI	GGYRCC	2 cut(s)	317, 946
BshTI	ACCGGT	1 cut(s)	320
BshVI	ATCGAT	2 cut(s)	348, 579
BsiHKAI	GWGCWC	2 cut(s)	146, 262
BsiHKCI	CYCGRG	2 cut(s)	238, 650
BsiSI	CCGG	8 cut(s)	41, 204, 246, 321, 464, 608, 780, 878
BsiWI	CGTACG	1 cut(s)	276
BslI	CCNNNNNNNGG	5 cut(s)	97, 607, 637, 782, 884
BsmAI	GTCTC	5 cut(s)	241, 356, 500, 786, 875
BsmBI	CGTCTC	2 cut(s)	500, 786
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	1 cut(s)	245
BsoBI	CYCGRG	2 cut(s)	238, 650
Bsp1286I	GDGCHC	3 cut(s)	146, 262, 417
Bsp143I	GATC	8 cut(s)	83, 198, 516, 743, 849, 861, 894, 963
BspACI	CCGC	7 cut(s)	21, 24, 54, 192, 251, 461, 833
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	352
BspDI	ATCGAT	2 cut(s)	348, 579
BspFNI	CGCG	1 cut(s)	621
BspHI	TCATGA	1 cut(s)	486
BspLI	GGNNCC	6 cut(s)	244, 319, 526, 726, 745, 948
BspPI	GGATC	3 cut(s)	738, 751, 958
BspQI	GCTCTTC	1 cut(s)	795
BspT107I	GGYRCC	2 cut(s)	317, 946
BsrFI	RCCGGY	4 cut(s)	40, 203, 245, 320
BsrI	ACTGG	2 cut(s)	334, 754
BssAI	RCCGGY	4 cut(s)	40, 203, 245, 320
BssECI	CCNNGG	4 cut(s)	96, 706, 810, 967
BssMI	GATC	8 cut(s)	83, 198, 516, 743, 849, 861, 894, 963
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	2 cut(s)	810, 967
Bst4CI	ACNGT	6 cut(s)	97, 430, 598, 640, 707, 983
Bst6I	CTCTTC	3 cut(s)	127, 638, 795
BstACI	GRCGYC	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	623, 777
BstDEI	CTNAG	3 cut(s)	360, 691, 942
BstDSI	CCRYGG	2 cut(s)	96, 706
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstFNI	CGCG	1 cut(s)	621
BstKTI	GATC	8 cut(s)	86, 201, 519, 746, 852, 864, 897, 966
BstMAI	GTCTC	5 cut(s)	241, 356, 500, 786, 875
BstMBI	GATC	8 cut(s)	83, 198, 516, 743, 849, 861, 894, 963
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 200, 209, 224, 257, 681, 776
BstSCI	CCNGG	1 cut(s)	607
BstUI	CGCG	1 cut(s)	621
BstV1I	GCAGC	2 cut(s)	599, 658
BstV2I	GAAGAC	1 cut(s)	905
BstX2I	RGATCY	2 cut(s)	743, 963
BstYI	RGATCY	2 cut(s)	743, 963
Bsu15I	ATCGAT	2 cut(s)	348, 579
BsuI	GTATCC	1 cut(s)	919
BsuRI	GGCC	1 cut(s)	245
BsuTUI	ATCGAT	2 cut(s)	348, 579
BtgI	CCRYGG	2 cut(s)	96, 706
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	4 cut(s)	341, 685, 747, 771
Cac8I	GCNNGC	2 cut(s)	623, 777
CciI	TCATGA	1 cut(s)	486
Cfr10I	RCCGGY	4 cut(s)	40, 203, 245, 320
Cfr13I	GGNCC	3 cut(s)	243, 524, 724
ClaI	ATCGAT	2 cut(s)	348, 579
CseI	GACGC	2 cut(s)	197, 433
Csp6I	GTAC	8 cut(s)	277, 318, 324, 388, 703, 754, 947, 979
CspAI	ACCGGT	1 cut(s)	320
CviAII	CATG	2 cut(s)	304, 487
CviQI	GTAC	8 cut(s)	277, 318, 324, 388, 703, 754, 947, 979
DdeI	CTNAG	3 cut(s)	360, 691, 942
DpnI	GATC	8 cut(s)	85, 200, 518, 745, 851, 863, 896, 965
DpnII	GATC	8 cut(s)	83, 198, 516, 743, 849, 861, 894, 963
Eam1104I	CTCTTC	3 cut(s)	127, 638, 795
EarI	CTCTTC	3 cut(s)	127, 638, 795
Eco130I	CCWWGG	2 cut(s)	810, 967
Eco24I	GRGCYC	1 cut(s)	417
Eco47I	GGWCC	2 cut(s)	524, 724
Eco57I	CTGAAG	3 cut(s)	642, 661, 899
Eco72I	CACGTG	1 cut(s)	141
Eco88I	CYCGRG	2 cut(s)	238, 650
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	524
EcoT14I	CCWWGG	2 cut(s)	810, 967
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	2 cut(s)	810, 967
Esp3I	CGTCTC	2 cut(s)	500, 786
FaeI	CATG	2 cut(s)	307, 490
FaiI	YATR	2 cut(s)	305, 488
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FatI	CATG	2 cut(s)	303, 486
Fnu4HI	GCNGC	7 cut(s)	21, 24, 54, 192, 588, 647, 834
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	7 cut(s)	21, 24, 54, 192, 588, 647, 834
FspBI	CTAG	2 cut(s)	132, 215
GluI	GCNGC	7 cut(s)	21, 24, 54, 192, 588, 647, 834
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	8 cut(s)	41, 204, 246, 321, 464, 608, 780, 878
HgaI	GACGC	2 cut(s)	197, 433
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	307, 490
HindIII	AAGCTT	1 cut(s)	673
HinfI	GANTC	2 cut(s)	119, 910
HpaII	CCGG	8 cut(s)	41, 204, 246, 321, 464, 608, 780, 878
HphI	GGTGA	2 cut(s)	418, 899
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	9 cut(s)	83, 157, 187, 361, 544, 845, 899, 925, 987
Hpy188III	TCNNGA	3 cut(s)	487, 823, 907
Hpy8I	GTNNAC	1 cut(s)	390
Hpy99I	CGWCG	3 cut(s)	191, 284, 845
HpyAV	CCTTC	4 cut(s)	72, 433, 515, 538
HpyCH4III	ACNGT	6 cut(s)	97, 430, 598, 640, 707, 983
HpyCH4IV	ACGT	3 cut(s)	140, 275, 819
HpyCH4V	TGCA	2 cut(s)	458, 764
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 200, 209, 224, 257, 681, 776
HpyF3I	CTNAG	3 cut(s)	360, 691, 942
HpySE526I	ACGT	3 cut(s)	140, 275, 819
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	307, 490
KpnI	GGTACC	2 cut(s)	321, 950
Kzo9I	GATC	8 cut(s)	83, 198, 516, 743, 849, 861, 894, 963
LguI	GCTCTTC	1 cut(s)	795
LmnI	GCTCC	2 cut(s)	188, 257
Lsp1109I	GCAGC	2 cut(s)	599, 658
MaeI	CTAG	2 cut(s)	132, 215
MaeII	ACGT	3 cut(s)	140, 275, 819
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	8 cut(s)	85, 200, 518, 745, 851, 863, 896, 965
MboI	GATC	8 cut(s)	83, 198, 516, 743, 849, 861, 894, 963
MflI	RGATCY	2 cut(s)	743, 963
MhlI	GDGCHC	3 cut(s)	146, 262, 417
MluI	ACGCGT	1 cut(s)	619
MlyI	GAGTC	2 cut(s)	113, 919
MmeI	TCCRAC	3 cut(s)	210, 365, 823
MseI	TTAA	1 cut(s)	642
MspI	CCGG	8 cut(s)	41, 204, 246, 321, 464, 608, 780, 878
MspR9I	CCNGG	1 cut(s)	609
Mva1269I	GAATGC	1 cut(s)	460
MvnI	CGCG	1 cut(s)	621
MwoI	GCNNNNNNNGC	7 cut(s)	50, 200, 209, 224, 257, 681, 776
NciI	CCSGG	1 cut(s)	609
NdeII	GATC	8 cut(s)	83, 198, 516, 743, 849, 861, 894, 963
NlaIII	CATG	2 cut(s)	307, 490
NlaIV	GGNNCC	6 cut(s)	244, 319, 526, 726, 745, 948
NmuCI	GTSAC	1 cut(s)	592
PaeR7I	CTCGAG	1 cut(s)	650
PagI	TCATGA	1 cut(s)	486
PciSI	GCTCTTC	1 cut(s)	795
PcsI	WCGNNNNNNNCGW	2 cut(s)	516, 903
PctI	GAATGC	1 cut(s)	460
Pfl23II	CGTACG	1 cut(s)	276
PflMI	CCANNNNNTGG	1 cut(s)	97
PfoI	TCCNGGA	1 cut(s)	607
PinAI	ACCGGT	1 cut(s)	320
PkrI	GCNGC	7 cut(s)	22, 25, 55, 193, 589, 648, 835
PleI	GAGTC	2 cut(s)	113, 918
PmaCI	CACGTG	1 cut(s)	141
PmlI	CACGTG	1 cut(s)	141
PpsI	GAGTC	2 cut(s)	113, 918
Ppu21I	YACGTR	1 cut(s)	141
PpuMI	RGGWCCY	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	524
PspCI	CACGTG	1 cut(s)	141
PspLI	CGTACG	1 cut(s)	276
PspN4I	GGNNCC	6 cut(s)	244, 319, 526, 726, 745, 948
PspPI	GGNCC	3 cut(s)	243, 524, 724
PspPPI	RGGWCCY	1 cut(s)	524
PspXI	VCTCGAGB	1 cut(s)	650
PsuI	RGATCY	2 cut(s)	743, 963
RsaI	GTAC	8 cut(s)	278, 319, 325, 389, 704, 755, 948, 980
RsaNI	GTAC	8 cut(s)	277, 318, 324, 388, 703, 754, 947, 979
SapI	GCTCTTC	1 cut(s)	795
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	7 cut(s)	21, 24, 54, 192, 588, 647, 834
Sau3AI	GATC	8 cut(s)	83, 198, 516, 743, 849, 861, 894, 963
Sau96I	GGNCC	3 cut(s)	243, 524, 724
SchI	GAGTC	2 cut(s)	113, 919
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	3 cut(s)	146, 262, 417
Sfr274I	CTCGAG	1 cut(s)	650
SinI	GGWCC	2 cut(s)	524, 724
SlaI	CTCGAG	1 cut(s)	650
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
SsiI	CCGC	7 cut(s)	21, 24, 54, 192, 251, 461, 833
SspMI	CTAG	2 cut(s)	132, 215
StyD4I	CCNGG	1 cut(s)	607
StyI	CCWWGG	2 cut(s)	810, 967
TaaI	ACNGT	6 cut(s)	97, 430, 598, 640, 707, 983
TaiI	ACGT	3 cut(s)	143, 278, 822
TaqI	TCGA	8 cut(s)	348, 411, 510, 519, 531, 579, 651, 906
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	5 cut(s)	23, 26, 56, 194, 836
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	4 cut(s)	341, 685, 754, 771
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	2 cut(s)	587, 646
Tsp45I	GTSAC	1 cut(s)	592
TspGWI	ACGGA	2 cut(s)	561, 829
TspRI	CASTG	4 cut(s)	341, 685, 754, 771
Van91I	CCANNNNNTGG	1 cut(s)	97
VpaK11BI	GGWCC	2 cut(s)	524, 724
XagI	CCTNNNNNAGG	1 cut(s)	780
XhoI	CTCGAG	1 cut(s)	650
XspI	CTAG	2 cut(s)	132, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.