pycom02g12470

oxygen-evolving enhancer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013223
Physical Location & Seq
Reverse (-)
9060852 .. 9062143
1292 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g12470.2

Sequence Viewer

Length: 765 bp
ATGGCAGCCTCCCTCCAAGCAGCTGCTACGCTCATGCAGCCGACCAAGGTCGGCGTGTCGGCGAGGACCAGTGTGCAACTGAGGTCCTCTCAGAGTATCTCCAAGGCCTTTGGCTTGGAGCCATCTGCTTCTGCTAGGCTCACTTGCTCTTTGCAAGCTGATCTCAAGGACTTGGCTCACAAGTGCCTTGATGCATCCAAGATTGCTGGATTTGCTCTTGCTACTTCCGCTCTCGTCGTTTCGGGAGCAGGTGCAGAGGGAGCTCCAAAGAGGTTGACCTTCGATGAAATCCAGAGCAAGACCTACTTGGAAGTGAAGGGAACAGGAACTGCTAACCAATGCCCAACCATCGACGGAGGATCGATCGAAGCATTTGCCTTCAAACCCGGCAAGTACACTGCCAAGAAGTTCTGCCTAGAGCCAACATCCTTCACTGTTAAGGCAGAGAGTGTGAGCAAGAACGCTCCACCAGAGTTCCAAAACACCAAGCTCATGACCCGCCTAACCTACACCCTCGATGAGATCGAAGGACCTTTCGAAGTTGCTCCAGATGGCACCATCAAGTTCGAAGAGAAAGACGGCATTGACTACGCTGCAGTGACAGTCCAGCTCCCGGGAGGCGAGCGCGTGCCCTTCCTCTTTACCATCAAGCAGCTGGTAGCCTCTGGCAAGCCCGAAAACTTCACAGGAGAGTTTCTAGTACCATCATACCGTGGATCCTCTTTCTTGGACCCCAAGGGAAGAGGATGGATCCACTGGTTATGA

Protein Analysis

255

Amino Acids

27.14

Weight (kDa)

8.26

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50820 AT5G66570
fragaria_vesca FvH4_1g14430
malus_domestica MD02G1157800.v1.1 MD15G1272500.v1.1
prunus_persica Prupe.7G145900_v2.0.a1
pyrus_communis pycom02g12470 pycom15g23610
rosa_chinensis RchiOBHm_Chr2g0103161
rosa_laevigata RLG00000017214
rosa_multiflora Rmu_sc0000388.1_g000004
rosa_roxburghii Rroxscaffold_2G00139880
rosa_rugosa Rorug02G0112200
rosa_samantha Rh2AG161000 Rh2BG167700 Rh2CG168000 Rh2DG166600
rosa_wichuraiana Rw2G012630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 554
AccBSI CCGCTC 1 cut(s) 230
AccII CGCG 1 cut(s) 627
AciI CCGC 2 cut(s) 228, 499
AclWI GGATC 5 cut(s) 367, 711, 724, 745, 758
AfaI GTAC 2 cut(s) 395, 702
AfiI CCNNNNNNNGG 1 cut(s) 613
AgsI TTSAA 1 cut(s) 382
AluBI AGCT 6 cut(s) 23, 158, 263, 490, 610, 655
AluI AGCT 6 cut(s) 23, 158, 263, 490, 610, 655
Alw21I GWGCWC 1 cut(s) 265
AlwI GGATC 5 cut(s) 367, 711, 724, 745, 758
AlwNI CAGNNNCTG 1 cut(s) 329
Ama87I CYCGRG 1 cut(s) 613
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 6 cut(s) 5, 20, 23, 37, 593, 652
AspLEI GCGC 1 cut(s) 627
AspS9I GGNCC 4 cut(s) 66, 84, 530, 730
AsuC2I CCSGG 3 cut(s) 387, 614, 615
AsuII TTCGAA 2 cut(s) 537, 567
AvaI CYCGRG 1 cut(s) 613
AvaII GGWCC 4 cut(s) 66, 84, 530, 730
BaeGI GKGCMC 1 cut(s) 633
BamHI GGATCC 2 cut(s) 716, 750
BanI GGYRCC 1 cut(s) 554
BanII GRGCYC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 6 cut(s) 10, 17, 32, 49, 580, 664
BccI CCATC 7 cut(s) 130, 356, 545, 566, 653, 712, 741
BceAI ACGGC 1 cut(s) 595
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BcnI CCSGG 3 cut(s) 387, 614, 615
BfaI CTAG 3 cut(s) 135, 416, 698
BfmI CTRYAG 1 cut(s) 594
BfuAI ACCTGC 1 cut(s) 239
BisI GCNGC 6 cut(s) 6, 21, 24, 38, 594, 653
BlsI GCNGC 6 cut(s) 7, 22, 25, 39, 595, 654
Bme1390I CCNGG 3 cut(s) 387, 614, 615
Bme18I GGWCC 4 cut(s) 66, 84, 530, 730
BmeT110I CYCGRG 1 cut(s) 613
BmgT120I GGNCC 4 cut(s) 66, 84, 530, 730
BmiI GGNNCC 5 cut(s) 120, 556, 718, 732, 752
BmrFI CCNGG 3 cut(s) 387, 614, 615
BmsI GCATC 2 cut(s) 181, 203
BoxI GACNNNNGTC 1 cut(s) 47
BplI GAGNNNNNCTC 2 cut(s) 73, 105
BpmI CTGGAG 1 cut(s) 531
Bpu14I TTCGAA 2 cut(s) 537, 567
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 3 cut(s) 387, 614, 615
Bsa29I ATCGAT 1 cut(s) 362
BsaJI CCNNGG 5 cut(s) 45, 102, 613, 712, 735
Bsc4I CCNNNNNNNGG 1 cut(s) 613
Bse1I ACTGG 2 cut(s) 69, 761
BseCI ATCGAT 1 cut(s) 362
BseDI CCNNGG 5 cut(s) 45, 102, 613, 712, 735
BseGI GGATG 3 cut(s) 194, 425, 752
BseLI CCNNNNNNNGG 1 cut(s) 613
BseMII CTCAG 2 cut(s) 71, 104
BseNI ACTGG 2 cut(s) 69, 761
BseSI GKGCMC 1 cut(s) 633
BseXI GCAGC 6 cut(s) 10, 17, 32, 49, 580, 664
BsgI GTGCAG 1 cut(s) 273
Bsh1236I CGCG 1 cut(s) 627
Bsh1285I CGRYCG 1 cut(s) 366
BshFI GGCC 1 cut(s) 107
BshNI GGYRCC 1 cut(s) 554
BshVI ATCGAT 1 cut(s) 362
BsiEI CGRYCG 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 613
BsiSI CCGG 2 cut(s) 387, 614
BslI CCNNNNNNNGG 1 cut(s) 613
BsnI GGCC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 613
Bsp119I TTCGAA 2 cut(s) 537, 567
Bsp1286I GDGCHC 2 cut(s) 265, 633
Bsp143I GATC 6 cut(s) 160, 359, 363, 522, 716, 750
BspACI CCGC 2 cut(s) 228, 499
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 72, 103
BspDI ATCGAT 1 cut(s) 362
BspFNI CGCG 1 cut(s) 627
BspHI TCATGA 1 cut(s) 492
BspLI GGNNCC 5 cut(s) 120, 556, 718, 732, 752
BspMAI CTGCAG 1 cut(s) 598
BspMI ACCTGC 1 cut(s) 239
BspPI GGATC 5 cut(s) 367, 711, 724, 745, 758
BspT104I TTCGAA 2 cut(s) 537, 567
BspT107I GGYRCC 1 cut(s) 554
BsrBI CCGCTC 1 cut(s) 230
BsrI ACTGG 2 cut(s) 69, 761
BssECI CCNNGG 5 cut(s) 45, 102, 613, 712, 735
BssMI GATC 6 cut(s) 160, 359, 363, 522, 716, 750
BssT1I CCWWGG 3 cut(s) 45, 102, 735
Bst4CI ACNGT 3 cut(s) 436, 604, 713
Bst6I CTCTTC 2 cut(s) 564, 736
BstBI TTCGAA 2 cut(s) 537, 567
BstC8I GCNNGC 4 cut(s) 156, 623, 629, 671
BstDEI CTNAG 2 cut(s) 80, 90
BstDSI CCRYGG 1 cut(s) 712
BstF5I GGATG 3 cut(s) 194, 425, 752
BstFNI CGCG 1 cut(s) 627
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 6 cut(s) 163, 362, 366, 525, 719, 753
BstMBI GATC 6 cut(s) 160, 359, 363, 522, 716, 750
BstMCI CGRYCG 1 cut(s) 366
BstMWI GCNNNNNNNGC 4 cut(s) 37, 212, 227, 260
BstPAI GACNNNNGTC 1 cut(s) 47
BstSCI CCNGG 3 cut(s) 385, 612, 613
BstSFI CTRYAG 1 cut(s) 594
BstSLI GKGCMC 1 cut(s) 633
BstUI CGCG 1 cut(s) 627
BstV1I GCAGC 6 cut(s) 10, 17, 32, 49, 580, 664
BstX2I RGATCY 2 cut(s) 716, 750
BstYI RGATCY 2 cut(s) 716, 750
Bsu15I ATCGAT 1 cut(s) 362
BsuRI GGCC 1 cut(s) 107
BsuTUI ATCGAT 1 cut(s) 362
BtgI CCRYGG 1 cut(s) 712
BtsCI GGATG 3 cut(s) 194, 425, 752
BtsI GCAGTG 2 cut(s) 396, 603
BtsIMutI CAGTG 5 cut(s) 76, 396, 432, 603, 754
BveI ACCTGC 1 cut(s) 239
Cac8I GCNNGC 4 cut(s) 156, 623, 629, 671
CaiI CAGNNNCTG 1 cut(s) 329
CciI TCATGA 1 cut(s) 492
CfoI GCGC 1 cut(s) 627
Cfr13I GGNCC 4 cut(s) 66, 84, 530, 730
Cfr9I CCCGGG 1 cut(s) 613
ClaI ATCGAT 1 cut(s) 362
Csp6I GTAC 2 cut(s) 394, 701
CviAII CATG 2 cut(s) 34, 493
CviQI GTAC 2 cut(s) 394, 701
DdeI CTNAG 2 cut(s) 80, 90
DpnI GATC 6 cut(s) 162, 361, 365, 524, 718, 752
DpnII GATC 6 cut(s) 160, 359, 363, 522, 716, 750
Eam1104I CTCTTC 2 cut(s) 564, 736
EarI CTCTTC 2 cut(s) 564, 736
Ecl136II GAGCTC 1 cut(s) 263
Eco130I CCWWGG 3 cut(s) 45, 102, 735
Eco147I AGGCCT 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 265
Eco47I GGWCC 4 cut(s) 66, 84, 530, 730
Eco53kI GAGCTC 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 613
EcoICRI GAGCTC 1 cut(s) 263
EcoO109I RGGNCCY 2 cut(s) 84, 530
EcoT14I CCWWGG 3 cut(s) 45, 102, 735
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 3 cut(s) 45, 102, 735
FaeI CATG 2 cut(s) 37, 496
FaiI YATR 4 cut(s) 35, 494, 709, 763
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FatI CATG 2 cut(s) 33, 492
FauI CCCGC 1 cut(s) 506
Fnu4HI GCNGC 6 cut(s) 6, 21, 24, 38, 594, 653
FokI GGATG 3 cut(s) 181, 412, 759
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 6 cut(s) 6, 21, 24, 38, 594, 653
FspBI CTAG 3 cut(s) 135, 416, 698
GlaI GCGC 1 cut(s) 626
GluI GCNGC 6 cut(s) 6, 21, 24, 38, 594, 653
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 1 cut(s) 107
HapII CCGG 2 cut(s) 387, 614
HhaI GCGC 1 cut(s) 627
Hin1II CATG 2 cut(s) 37, 496
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HpaII CCGG 2 cut(s) 387, 614
Hpy166II GTNNAC 2 cut(s) 276, 396
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 4 cut(s) 243, 292, 493, 548
Hpy8I GTNNAC 2 cut(s) 276, 396
Hpy99I CGWCG 2 cut(s) 239, 356
HpyAV CCTTC 6 cut(s) 289, 310, 388, 439, 521, 643
HpyCH4III ACNGT 3 cut(s) 436, 604, 713
HpyCH4V TGCA 6 cut(s) 37, 76, 154, 194, 254, 596
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 212, 227, 260
HpyF3I CTNAG 2 cut(s) 80, 90
Hsp92II CATG 2 cut(s) 37, 496
HspAI GCGC 1 cut(s) 625
Kzo9I GATC 6 cut(s) 160, 359, 363, 522, 716, 750
LmnI GCTCC 7 cut(s) 118, 245, 260, 268, 469, 550, 615
Lsp1109I GCAGC 6 cut(s) 10, 17, 32, 49, 580, 664
LweI GCATC 2 cut(s) 181, 203
MaeI CTAG 3 cut(s) 135, 416, 698
MaeIII GTNAC 1 cut(s) 598
MalI GATC 6 cut(s) 162, 361, 365, 524, 718, 752
MbiI CCGCTC 1 cut(s) 230
MboI GATC 6 cut(s) 160, 359, 363, 522, 716, 750
MboII GAAGA 2 cut(s) 581, 753
MflI RGATCY 2 cut(s) 716, 750
MhlI GDGCHC 2 cut(s) 265, 633
Mph1103I ATGCAT 1 cut(s) 196
MseI TTAA 1 cut(s) 438
MspA1I CMGCKG 2 cut(s) 23, 655
MspI CCGG 2 cut(s) 387, 614
MspR9I CCNGG 3 cut(s) 387, 614, 615
MvnI CGCG 1 cut(s) 627
MwoI GCNNNNNNNGC 4 cut(s) 37, 212, 227, 260
NciI CCSGG 3 cut(s) 387, 614, 615
NdeII GATC 6 cut(s) 160, 359, 363, 522, 716, 750
NlaIII CATG 2 cut(s) 37, 496
NlaIV GGNNCC 5 cut(s) 120, 556, 718, 732, 752
NmuCI GTSAC 1 cut(s) 598
NsiI ATGCAT 1 cut(s) 196
NspV TTCGAA 2 cut(s) 537, 567
PagI TCATGA 1 cut(s) 492
PaqCI CACCTGC 1 cut(s) 239
PceI AGGCCT 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 522
PkrI GCNGC 6 cut(s) 7, 22, 25, 39, 595, 654
Ple19I CGATCG 1 cut(s) 366
PpuMI RGGWCCY 2 cut(s) 84, 530
PshAI GACNNNNGTC 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 265
Psp5II RGGWCCY 2 cut(s) 84, 530
PspN4I GGNNCC 5 cut(s) 120, 556, 718, 732, 752
PspPI GGNCC 4 cut(s) 66, 84, 530, 730
PspPPI RGGWCCY 2 cut(s) 84, 530
PstI CTGCAG 1 cut(s) 598
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 2 cut(s) 716, 750
PvuI CGATCG 1 cut(s) 366
PvuII CAGCTG 2 cut(s) 23, 655
RsaI GTAC 2 cut(s) 395, 702
RsaNI GTAC 2 cut(s) 394, 701
SacI GAGCTC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 6 cut(s) 6, 21, 24, 38, 594, 653
Sau3AI GATC 6 cut(s) 160, 359, 363, 522, 716, 750
Sau96I GGNCC 4 cut(s) 66, 84, 530, 730
ScrFI CCNGG 3 cut(s) 387, 614, 615
SduI GDGCHC 2 cut(s) 265, 633
SfaNI GCATC 2 cut(s) 181, 203
SfcI CTRYAG 1 cut(s) 594
SfuI TTCGAA 2 cut(s) 537, 567
SinI GGWCC 4 cut(s) 66, 84, 530, 730
SmaI CCCGGG 1 cut(s) 615
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SseBI AGGCCT 1 cut(s) 107
SsiI CCGC 2 cut(s) 228, 499
SspMI CTAG 3 cut(s) 135, 416, 698
SstI GAGCTC 1 cut(s) 265
StuI AGGCCT 1 cut(s) 107
StyD4I CCNGG 3 cut(s) 385, 612, 613
StyI CCWWGG 3 cut(s) 45, 102, 735
TaaI ACNGT 3 cut(s) 436, 604, 713
TaqI TCGA 8 cut(s) 282, 351, 362, 366, 516, 525, 537, 567
TatI WGTACW 1 cut(s) 393
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 5 cut(s) 76, 403, 439, 603, 761
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 6 cut(s) 5, 20, 23, 37, 593, 652
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 1 cut(s) 369
TspMI CCCGGG 1 cut(s) 613
TspRI CASTG 5 cut(s) 76, 403, 439, 603, 761
VpaK11BI GGWCC 4 cut(s) 66, 84, 530, 730
XcmI CCANNNNNNNNNTGG 1 cut(s) 652
XmaI CCCGGG 1 cut(s) 613
XspI CTAG 3 cut(s) 135, 416, 698
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.