Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013223

Physical Location & Seq

Genomic Coordinates Forward (+)

9597050 .. 9598124

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0112200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTGTGCACCAATTGCTCAAGAACTCATGGACTCGCCTCGTTTGCACTCTCAGTCCTCGCTCTCACTTCATCACTCTCGCTCATTGTTACCGTGGATACTGCTCTGACTCTTCTGGGATTAATAGTAACAACTCTGAGCTTGAAGAGTTATGGAGTTCAAAGGAGGGTTTAGTTCGGTGCTCGGCAAATCACGTCCCTTTATCTCCAATAGGATTCTTGGAGCGAGCTGCAAAGGCCTACAGGGACAGGACCTCTGTAATCTATGGCTCTCTGAAATACACTTGGGCTCAAACCCATCAACGCTGCCTTAAATTAGCTTCCGCTCTCACTCGGTTGGGAATTTCTCGCGGTGATGTGGTTGCAACTTTGGCACCAAATGTCCCAGCTATGCATGAGCTTCATTTTGCAGCTCCAATGGCTGGGGCAGTTCTTTGTACACTAAATGCTCGGCTTGATTCAGCTATGATATCTGTTCTTCTTTGTCATTCTGAAGCTAAAATCGTCTTTGTCGATTACCAATTACTTGGAATTGTTGATGGAGCACTTGAATTAATTGCCGAAAAAGCTGTTTCAAAACCGCCTATTGTAGTTTTAATTGCTGATTCTGATGGGTCATCATCTCCAAACAGCTCTACTTCAGAAACTGAACCACCTTATGAGTATGAAAGTCTTTTAGAAAGTGGAAATAGTGGATTTGAGATTAGGAGACCAAAAAGTGAATGGGATCCAATCAGTGTAAATTACACCTCTGGCACAACATCAAGGCCGAAAGGGGTTGTCTGTAGTCACCGCGGGGCTTATCTCAATTCACTGGCCACAGTTTTGCTTTGCGGAATAGGCTCAATGCCGGTTAATCTATGGACTGCGCCTATGTTTCATTGCCATGGATGGTCTCTCATTTGGGGTTTGGCTGCTCAGGGTGGTACTAAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

MSP

Protein Analysis

312

Amino Acids

33.87

Weight (kDa)

7.6

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	74 - 310	7.8e-47	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50820 AT5G66570
fragaria_vesca	FvH4_1g14430
malus_domestica	MD02G1157800.v1.1 MD15G1272500.v1.1
prunus_persica	Prupe.7G145900_v2.0.a1
pyrus_communis	pycom02g12470 pycom15g23610
rosa_chinensis	RchiOBHm_Chr2g0103161
rosa_laevigata	RLG00000017214
rosa_multiflora	Rmu_sc0000388.1_g000004
rosa_roxburghii	Rroxscaffold_2G00139880
rosa_rugosa	Rorug02G0112200
rosa_samantha	Rh2AG161000 Rh2BG167700 Rh2CG168000 Rh2DG166600
rosa_wichuraiana	Rw2G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	373
AccB7I	CCANNNNNTGG	1 cut(s)	422
AccBSI	CCGCTC	1 cut(s)	326
AccII	CGCG	2 cut(s)	351, 795
AciI	CCGC	6 cut(s)	324, 351, 581, 793, 795, 834
AclWI	GGATC	2 cut(s)	722, 735
AcoI	YGGCCR	1 cut(s)	816
AcsI	RAATTY	1 cut(s)	342
AcuI	CTGAAG	2 cut(s)	513, 624
AfaI	GTAC	3 cut(s)	439, 928, 935
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	4 cut(s)	146, 162, 551, 576
AjiI	CACGTC	1 cut(s)	196
Alw21I	GWGCWC	3 cut(s)	12, 185, 547
Alw26I	GTCTC	2 cut(s)	703, 900
Alw44I	GTGCAC	1 cut(s)	8
AlwI	GGATC	2 cut(s)	722, 735
AlwNI	CAGNNNCTG	1 cut(s)	647
AoxI	GGCC	3 cut(s)	237, 767, 816
ApaLI	GTGCAC	1 cut(s)	8
ApeKI	GCWGC	4 cut(s)	230, 306, 410, 914
ApoI	RAATTY	1 cut(s)	342
AseI	ATTAAT	2 cut(s)	123, 554
AspLEI	GCGC	1 cut(s)	871
AspS9I	GGNCC	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	365, 782
AvaII	GGWCC	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	12
BalI	TGGCCA	1 cut(s)	818
BamHI	GGATCC	1 cut(s)	727
BanI	GGYRCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	292
Bbv12I	GWGCWC	3 cut(s)	12, 185, 547
BbvI	GCAGC	4 cut(s)	217, 293, 422, 901
BccI	CCATC	4 cut(s)	306, 533, 605, 885
BciVI	GTATCC	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	703, 900
BfmI	CTRYAG	2 cut(s)	241, 784
BfuI	GTATCC	1 cut(s)	92
BisI	GCNGC	4 cut(s)	231, 307, 411, 915
BlsI	GCNGC	4 cut(s)	232, 308, 412, 916
BmcAI	AGTACT	1 cut(s)	935
Bme18I	GGWCC	1 cut(s)	252
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	2 cut(s)	375, 729
Bpu10I	CCTNAGC	1 cut(s)	918
BpuEI	CTTGAG	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	703, 900
BsaJI	CCNNGG	3 cut(s)	94, 793, 886
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse118I	RCCGGY	1 cut(s)	850
Bse1I	ACTGG	1 cut(s)	819
Bse3DI	GCAATG	1 cut(s)	880
BseDI	CCNNGG	3 cut(s)	94, 793, 886
BseGI	GGATG	1 cut(s)	896
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	1 cut(s)	880
BseMII	CTCAG	3 cut(s)	67, 129, 932
BseNI	ACTGG	1 cut(s)	819
BseSI	GKGCMC	1 cut(s)	12
BseXI	GCAGC	4 cut(s)	217, 293, 422, 901
BseYI	CCCAGC	2 cut(s)	385, 422
Bsh1236I	CGCG	2 cut(s)	351, 795
BshFI	GGCC	3 cut(s)	239, 769, 818
BshNI	GGYRCC	1 cut(s)	373
BsiHKAI	GWGCWC	3 cut(s)	12, 185, 547
BsiSI	CCGG	1 cut(s)	851
BslFI	GGGAC	3 cut(s)	182, 260, 368
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	2 cut(s)	703, 900
BsmFI	GGGAC	3 cut(s)	182, 260, 368
BsnI	GGCC	3 cut(s)	239, 769, 818
Bso31I	GGTCTC	2 cut(s)	703, 900
Bsp1286I	GDGCHC	4 cut(s)	12, 185, 292, 547
Bsp1407I	TGTACA	1 cut(s)	437
Bsp143I	GATC	1 cut(s)	727
Bsp19I	CCATGG	1 cut(s)	886
BspACI	CCGC	6 cut(s)	324, 351, 581, 793, 795, 834
BspANI	GGCC	3 cut(s)	239, 769, 818
BspCNI	CTCAG	3 cut(s)	66, 130, 931
BspFNI	CGCG	2 cut(s)	351, 795
BspLI	GGNNCC	2 cut(s)	375, 729
BspPI	GGATC	2 cut(s)	722, 735
BspT107I	GGYRCC	1 cut(s)	373
BspTNI	GGTCTC	2 cut(s)	703, 900
BsrBI	CCGCTC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	880
BsrFI	RCCGGY	1 cut(s)	850
BsrGI	TGTACA	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	819
BssAI	RCCGGY	1 cut(s)	850
BssECI	CCNNGG	3 cut(s)	94, 793, 886
BssMI	GATC	1 cut(s)	727
BssT1I	CCWWGG	1 cut(s)	886
Bst4CI	ACNGT	2 cut(s)	95, 823
Bst6I	CTCTTC	2 cut(s)	118, 141
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstAUI	TGTACA	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	4 cut(s)	53, 138, 918, 930
BstDSI	CCRYGG	3 cut(s)	94, 793, 886
BstF5I	GGATG	1 cut(s)	896
BstFNI	CGCG	2 cut(s)	351, 795
BstHHI	GCGC	1 cut(s)	871
BstKTI	GATC	1 cut(s)	730
BstMAI	GTCTC	2 cut(s)	703, 900
BstMBI	GATC	1 cut(s)	727
BstMWI	GCNNNNNNNGC	7 cut(s)	16, 45, 236, 371, 419, 566, 840
BstSFI	CTRYAG	2 cut(s)	241, 784
BstSLI	GKGCMC	1 cut(s)	12
BstUI	CGCG	2 cut(s)	351, 795
BstV1I	GCAGC	4 cut(s)	217, 293, 422, 901
BstX2I	RGATCY	1 cut(s)	727
BstXI	CCANNNNNNTGG	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	727
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	3 cut(s)	239, 769, 818
BtgI	CCRYGG	3 cut(s)	94, 793, 886
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	896
BtsIMutI	CAGTG	2 cut(s)	742, 812
Cac8I	GCNNGC	1 cut(s)	228
CaiI	CAGNNNCTG	1 cut(s)	647
CfoI	GCGC	1 cut(s)	871
Cfr10I	RCCGGY	1 cut(s)	850
Cfr13I	GGNCC	1 cut(s)	252
Cfr42I	CCGCGG	1 cut(s)	796
Csp6I	GTAC	3 cut(s)	438, 927, 934
CviAII	CATG	3 cut(s)	30, 395, 887
CviQI	GTAC	3 cut(s)	438, 927, 934
DdeI	CTNAG	4 cut(s)	53, 138, 918, 930
DpnI	GATC	1 cut(s)	729
DpnII	GATC	1 cut(s)	727
EaeI	YGGCCR	1 cut(s)	816
Eam1104I	CTCTTC	2 cut(s)	118, 141
EarI	CTCTTC	2 cut(s)	118, 141
Eco130I	CCWWGG	1 cut(s)	886
Eco147I	AGGCCT	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	2 cut(s)	703, 900
Eco32I	GATATC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	252
Eco57I	CTGAAG	2 cut(s)	513, 624
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRV	GATATC	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	886
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	886
FaeI	CATG	3 cut(s)	33, 398, 890
FaqI	GGGAC	3 cut(s)	182, 260, 368
FatI	CATG	3 cut(s)	29, 394, 886
FauI	CCCGC	1 cut(s)	788
Fnu4HI	GCNGC	4 cut(s)	231, 307, 411, 915
FokI	GGATG	1 cut(s)	903
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	4 cut(s)	231, 307, 411, 915
GlaI	GCGC	1 cut(s)	870
GluI	GCNGC	4 cut(s)	231, 307, 411, 915
GsaI	CCCAGC	2 cut(s)	389, 426
HaeIII	GGCC	3 cut(s)	239, 769, 818
HapII	CCGG	1 cut(s)	851
HhaI	GCGC	1 cut(s)	871
Hin1II	CATG	3 cut(s)	33, 398, 890
Hin6I	GCGC	1 cut(s)	869
HinP1I	GCGC	1 cut(s)	869
HinfI	GANTC	5 cut(s)	34, 110, 216, 458, 605
HpaII	CCGG	1 cut(s)	851
HphI	GGTGA	2 cut(s)	365, 782
Hpy166II	GTNNAC	2 cut(s)	10, 440
Hpy188I	TCNGA	6 cut(s)	109, 139, 276, 493, 610, 643
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	2 cut(s)	10, 440
HpyCH4III	ACNGT	2 cut(s)	95, 823
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	6 cut(s)	10, 48, 233, 365, 394, 410
HpyF10VI	GCNNNNNNNGC	7 cut(s)	16, 45, 236, 371, 419, 566, 840
HpyF3I	CTNAG	4 cut(s)	53, 138, 918, 930
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	33, 398, 890
HspAI	GCGC	1 cut(s)	869
KspI	CCGCGG	1 cut(s)	796
Kzo9I	GATC	1 cut(s)	727
LmnI	GCTCC	3 cut(s)	223, 418, 542
LpnPI	CCDG	9 cut(s)	102, 229, 235, 399, 408, 738, 800, 864, 905
Lsp1109I	GCAGC	4 cut(s)	217, 293, 422, 901
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	3 cut(s)	89, 128, 788
MalI	GATC	1 cut(s)	729
MbiI	CCGCTC	1 cut(s)	326
MboI	GATC	1 cut(s)	727
MboII	GAAGA	3 cut(s)	105, 158, 470
MfeI	CAATTG	1 cut(s)	14
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	4 cut(s)	12, 185, 292, 547
MlsI	TGGCCA	1 cut(s)	818
MluNI	TGGCCA	1 cut(s)	818
MlyI	GAGTC	2 cut(s)	28, 104
MnlI	CCTC	5 cut(s)	50, 69, 160, 265, 760
Mox20I	TGGCCA	1 cut(s)	818
Mph1103I	ATGCAT	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	818
MseI	TTAA	5 cut(s)	123, 312, 554, 596, 855
MslI	CAYNNNNRTG	1 cut(s)	885
Msp20I	TGGCCA	1 cut(s)	818
MspA1I	CMGCKG	1 cut(s)	795
MspI	CCGG	1 cut(s)	851
MunI	CAATTG	1 cut(s)	14
MvnI	CGCG	2 cut(s)	351, 795
MwoI	GCNNNNNNNGC	7 cut(s)	16, 45, 236, 371, 419, 566, 840
NcoI	CCATGG	1 cut(s)	886
NdeII	GATC	1 cut(s)	727
NlaIII	CATG	3 cut(s)	33, 398, 890
NlaIV	GGNNCC	2 cut(s)	375, 729
NmeAIII	GCCGAG	2 cut(s)	164, 430
NmuCI	GTSAC	1 cut(s)	788
NsiI	ATGCAT	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	510
PfeI	GAWTC	3 cut(s)	216, 458, 605
PflMI	CCANNNNNTGG	1 cut(s)	422
PkrI	GCNGC	4 cut(s)	232, 308, 412, 916
PleI	GAGTC	2 cut(s)	28, 104
PpsI	GAGTC	2 cut(s)	28, 104
PpuMI	RGGWCCY	1 cut(s)	252
PshBI	ATTAAT	2 cut(s)	123, 554
Psp5II	RGGWCCY	1 cut(s)	252
PspFI	CCCAGC	2 cut(s)	385, 422
PspN4I	GGNNCC	2 cut(s)	375, 729
PspPI	GGNCC	1 cut(s)	252
PspPPI	RGGWCCY	1 cut(s)	252
PstNI	CAGNNNCTG	1 cut(s)	647
PsuI	RGATCY	1 cut(s)	727
RsaI	GTAC	3 cut(s)	439, 928, 935
RsaNI	GTAC	3 cut(s)	438, 927, 934
RseI	CAYNNNNRTG	1 cut(s)	885
SacII	CCGCGG	1 cut(s)	796
SaqAI	TTAA	5 cut(s)	123, 312, 554, 596, 855
SatI	GCNGC	4 cut(s)	231, 307, 411, 915
Sau3AI	GATC	1 cut(s)	727
Sau96I	GGNCC	1 cut(s)	252
ScaI	AGTACT	1 cut(s)	935
SchI	GAGTC	2 cut(s)	28, 104
SduI	GDGCHC	4 cut(s)	12, 185, 292, 547
SfcI	CTRYAG	2 cut(s)	241, 784
Sfr303I	CCGCGG	1 cut(s)	796
SgrBI	CCGCGG	1 cut(s)	796
SinI	GGWCC	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	885
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	6 cut(s)	324, 351, 581, 793, 795, 834
StuI	AGGCCT	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	886
TaaI	ACNGT	2 cut(s)	95, 823
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	513
TatI	WGTACW	2 cut(s)	437, 933
TfiI	GAWTC	3 cut(s)	216, 458, 605
Tru1I	TTAA	5 cut(s)	123, 312, 554, 596, 855
Tru9I	TTAA	5 cut(s)	123, 312, 554, 596, 855
TscAI	CASTG	2 cut(s)	742, 819
TseFI	GTSAC	1 cut(s)	788
TseI	GCWGC	4 cut(s)	230, 306, 410, 914
Tsp45I	GTSAC	1 cut(s)	788
TspDTI	ATGAA	4 cut(s)	61, 392, 681, 869
TspRI	CASTG	2 cut(s)	742, 819
Van91I	CCANNNNNTGG	1 cut(s)	422
VneI	GTGCAC	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	252
VspI	ATTAAT	2 cut(s)	123, 554
XapI	RAATTY	1 cut(s)	342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	720
ZrmI	AGTACT	1 cut(s)	935
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.