Rroxscaffold_2G00139880

oxygen-evolving enhancer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013223
Physical Location & Seq
Forward (+)
78168829 .. 78170513
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00139880.1

Sequence Viewer

Length: 996 bp
ATGGCAGCCTCTATGCAAGCAGCTGCTACACTTATGCAACCCACAAAGGTGGGTGTGCCATCTAGGACCAGCCTGCAGTTGAGGTCCTCTAATGTTTCTAAGGCTTTTGGGTTGGAGCCAGCTGCCTCTTCTAGGCTCACTTGCTCTTTGCAGACTGATCTTAAGGAGTTTGCACACAAGTGTGTAGATGCCACCAAGATTGCTGGCTTTGCTCTCGCCACTTCCGCCCTCGTCGTCTCTGGAGCAGGAGCAGAAGGAATCCCAAAGAGGCTGACCTACGACGAAATCCAGAGCAAGACATACATGGAAGTGAAGGGAACCGGAACTGCCAACCAATGCCCCACCATTGATGGTGGATCCGAAGCCTTTGCCTTCAAGCCAGGCAAGTACGTAGCCAAGAAGTTCTGTCTAGAGCCAACTTCCTTCACAGTCAAGGCAGATAGTGTGAGCAAGAACGCCCCACCAGAGTTCCAAAACACCAAGCTCATGACTCGCCTAACCTACACCCTTGATGAGATCGAGGGCCCTTTCGAGGTCTCCCCTGATGGAACTGTCAAGTTCGAGGAGAAAGATGGAATTGATTACGCTGCTGTTACAGTCCAGCTCCCCGGAGGTGAGCGTGTGCCTTTCTTGTTCACCATCAAGCAACTTGTGGCGTCTGGAAAGCCCGACAACTTCACCGGAGAGTTCTTGGTACCCTCATACAGAGGCTCCTCTTTCTTGGACCCAAAGGGCAGAGGTGGCTCCACCGGTTATGACAATGCGGTTGCGCTGCCAGCTGGAGGAAGAGGAGATGAGGAGGAACTTGCCAAGGAGAACACCAAGAATGTTTCATCATCAAAAGGGAAGATCACACTGAGTGTGACCAAAACCAAGCCGGAGAGCGGCGAGTTGATCGGAGTGTTTGAGAGCATTCAGCCTTCTGATACTGATTTGGGTGCCAAGGTTCCAAAGGATGTCAAAATCCAAGGGGTCTGGTATGCTCAGCTTGATTAG

Protein Analysis

331

Amino Acids

35.16

Weight (kDa)

6.09

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MSP PF01716 98 - 330 2.6e-98 Manganese-stabilising protein / photosystem II polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50820 AT5G66570
fragaria_vesca FvH4_1g14430
malus_domestica MD02G1157800.v1.1 MD15G1272500.v1.1
prunus_persica Prupe.7G145900_v2.0.a1
pyrus_communis pycom02g12470 pycom15g23610
rosa_chinensis RchiOBHm_Chr2g0103161
rosa_laevigata RLG00000017214
rosa_multiflora Rmu_sc0000388.1_g000004
rosa_roxburghii Rroxscaffold_2G00139880
rosa_rugosa Rorug02G0112200
rosa_samantha Rh2AG161000 Rh2BG167700 Rh2CG168000 Rh2DG166600
rosa_wichuraiana Rw2G012630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 694
AccB1I GGYRCC 2 cut(s) 694, 938
AccBSI CCGCTC 1 cut(s) 885
AciI CCGC 3 cut(s) 225, 764, 885
AclWI GGATC 2 cut(s) 351, 364
AcyI GRCGYC 1 cut(s) 656
AdeI CACNNNGTG 1 cut(s) 860
AfaI GTAC 2 cut(s) 389, 696
AfiI CCNNNNNNNGG 4 cut(s) 132, 532, 782, 884
AflII CTTAAG 1 cut(s) 161
AgeI ACCGGT 1 cut(s) 749
AgsI TTSAA 1 cut(s) 376
AjnI CCWGG 1 cut(s) 379
AleI CACNNNNGTG 3 cut(s) 47, 178, 180
AluBI AGCT 6 cut(s) 23, 122, 484, 604, 779, 988
AluI AGCT 6 cut(s) 23, 122, 484, 604, 779, 988
Alw26I GTCTC 2 cut(s) 241, 541
AlwI GGATC 2 cut(s) 351, 364
AoxI GGCC 1 cut(s) 523
ApaI GGGCCC 1 cut(s) 527
ApeKI GCWGC 6 cut(s) 5, 20, 23, 122, 587, 772
AsiGI ACCGGT 1 cut(s) 749
Asp718I GGTACC 1 cut(s) 694
AspLEI GCGC 1 cut(s) 772
AspS9I GGNCC 5 cut(s) 66, 84, 523, 524, 724
AsuC2I CCSGG 1 cut(s) 609
AsuHPI GGTGA 3 cut(s) 626, 628, 670
AvaII GGWCC 3 cut(s) 66, 84, 724
BaeGI GKGCMC 1 cut(s) 527
BamHI GGATCC 1 cut(s) 356
BanI GGYRCC 2 cut(s) 694, 938
BanII GRGCYC 1 cut(s) 527
BbvI GCAGC 6 cut(s) 10, 17, 32, 109, 574, 759
BccI CCATC 5 cut(s) 67, 344, 539, 566, 647
BcgI CGANNNNNNTGC 2 cut(s) 350, 384
BciT130I CCWGG 1 cut(s) 381
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 2 cut(s) 241, 541
BfaI CTAG 3 cut(s) 63, 132, 410
BfmI CTRYAG 1 cut(s) 74
BfrI CTTAAG 1 cut(s) 161
BisI GCNGC 7 cut(s) 6, 21, 24, 123, 588, 773, 886
BlpI GCTNAGC 1 cut(s) 984
BlsI GCNGC 7 cut(s) 7, 22, 25, 124, 589, 774, 887
Bme1390I CCNGG 2 cut(s) 381, 609
Bme18I GGWCC 3 cut(s) 66, 84, 724
BmgT120I GGNCC 5 cut(s) 66, 84, 523, 524, 724
BmrFI CCNGG 2 cut(s) 381, 609
BmsI GCATC 1 cut(s) 178
BpmI CTGGAG 2 cut(s) 261, 801
Bpu1102I GCTNAGC 1 cut(s) 984
BpuMI CCSGG 1 cut(s) 609
BsaAI YACGTR 1 cut(s) 391
BsaHI GRCGYC 1 cut(s) 656
BsaI GGTCTC 1 cut(s) 541
BsaJI CCNNGG 4 cut(s) 607, 810, 942, 967
BsaWI WCCGGW 3 cut(s) 320, 680, 749
BsaXI ACNNNNNCTCC 2 cut(s) 695, 725
Bsc4I CCNNNNNNNGG 4 cut(s) 132, 532, 782, 884
Bse118I RCCGGY 1 cut(s) 749
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 4 cut(s) 607, 810, 942, 967
BseGI GGATG 1 cut(s) 961
BseLI CCNNNNNNNGG 4 cut(s) 132, 532, 782, 884
BseMII CTCAG 1 cut(s) 848
BseRI GAGGAG 4 cut(s) 578, 703, 804, 812
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 6 cut(s) 10, 17, 32, 109, 574, 759
BshFI GGCC 1 cut(s) 525
BshNI GGYRCC 2 cut(s) 694, 938
BshTI ACCGGT 1 cut(s) 749
BsiSI CCGG 5 cut(s) 321, 609, 681, 750, 878
BslI CCNNNNNNNGG 4 cut(s) 132, 532, 782, 884
BsmAI GTCTC 2 cut(s) 241, 541
BsmBI CGTCTC 1 cut(s) 241
BsmI GAATGC 1 cut(s) 912
BsnI GGCC 1 cut(s) 525
Bso31I GGTCTC 1 cut(s) 541
Bsp120I GGGCCC 1 cut(s) 523
Bsp1286I GDGCHC 1 cut(s) 527
Bsp143I GATC 5 cut(s) 157, 356, 516, 849, 894
Bsp1720I GCTNAGC 1 cut(s) 984
BspACI CCGC 3 cut(s) 225, 764, 885
BspANI GGCC 1 cut(s) 525
BspCNI CTCAG 1 cut(s) 849
BspHI TCATGA 1 cut(s) 486
BspMAI CTGCAG 1 cut(s) 78
BspPI GGATC 2 cut(s) 351, 364
BspT107I GGYRCC 2 cut(s) 694, 938
BspTI CTTAAG 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 541
BsrBI CCGCTC 1 cut(s) 885
BsrFI RCCGGY 1 cut(s) 749
BssAI RCCGGY 1 cut(s) 749
BssECI CCNNGG 4 cut(s) 607, 810, 942, 967
BssMI GATC 5 cut(s) 157, 356, 516, 849, 894
BssNI GRCGYC 1 cut(s) 656
BssT1I CCWWGG 3 cut(s) 810, 942, 967
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 3 cut(s) 430, 553, 598
Bst6I CTCTTC 2 cut(s) 133, 781
BstACI GRCGYC 1 cut(s) 656
BstAFI CTTAAG 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 391
BstC8I GCNNGC 5 cut(s) 18, 74, 120, 205, 777
BstDEI CTNAG 3 cut(s) 99, 857, 984
BstENI CCTNNNNNAGG 1 cut(s) 130
BstF5I GGATG 1 cut(s) 961
BstHHI GCGC 1 cut(s) 772
BstKTI GATC 5 cut(s) 160, 359, 519, 852, 897
BstMAI GTCTC 2 cut(s) 241, 541
BstMBI GATC 5 cut(s) 157, 356, 516, 849, 894
BstMWI GCNNNNNNNGC 4 cut(s) 209, 224, 741, 776
BstNI CCWGG 1 cut(s) 381
BstSCI CCNGG 2 cut(s) 379, 607
BstSFI CTRYAG 1 cut(s) 74
BstSLI GKGCMC 1 cut(s) 527
BstSNI TACGTA 1 cut(s) 391
BstV1I GCAGC 6 cut(s) 10, 17, 32, 109, 574, 759
BstX2I RGATCY 1 cut(s) 356
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 1 cut(s) 356
BsuRI GGCC 1 cut(s) 525
BtsCI GGATG 1 cut(s) 961
BtsIMutI CAGTG 1 cut(s) 854
Cac8I GCNNGC 5 cut(s) 18, 74, 120, 205, 777
CciI TCATGA 1 cut(s) 486
CfoI GCGC 1 cut(s) 772
Cfr10I RCCGGY 1 cut(s) 749
Cfr13I GGNCC 5 cut(s) 66, 84, 523, 524, 724
CseI GACGC 1 cut(s) 645
Csp6I GTAC 2 cut(s) 388, 695
CspAI ACCGGT 1 cut(s) 749
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 2 cut(s) 304, 487
CviQI GTAC 2 cut(s) 388, 695
DdeI CTNAG 3 cut(s) 99, 857, 984
DpnI GATC 5 cut(s) 159, 358, 518, 851, 896
DpnII GATC 5 cut(s) 157, 356, 516, 849, 894
DraIII CACNNNGTG 1 cut(s) 860
Eam1104I CTCTTC 2 cut(s) 133, 781
EarI CTCTTC 2 cut(s) 133, 781
EciI GGCGGA 1 cut(s) 214
Eco105I TACGTA 1 cut(s) 391
Eco130I CCWWGG 3 cut(s) 810, 942, 967
Eco24I GRGCYC 1 cut(s) 527
Eco31I GGTCTC 1 cut(s) 541
Eco47I GGWCC 3 cut(s) 66, 84, 724
EcoNI CCTNNNNNAGG 1 cut(s) 130
EcoO109I RGGNCCY 3 cut(s) 84, 523, 524
EcoRII CCWGG 1 cut(s) 379
EcoT14I CCWWGG 3 cut(s) 810, 942, 967
EcoT38I GRGCYC 1 cut(s) 527
ErhI CCWWGG 3 cut(s) 810, 942, 967
Esp3I CGTCTC 1 cut(s) 241
FaeI CATG 2 cut(s) 307, 490
FaiI YATR 8 cut(s) 14, 35, 301, 305, 488, 703, 756, 981
FatI CATG 2 cut(s) 303, 486
Fnu4HI GCNGC 7 cut(s) 6, 21, 24, 123, 588, 773, 886
FokI GGATG 1 cut(s) 968
FriOI GRGCYC 1 cut(s) 527
Fsp4HI GCNGC 7 cut(s) 6, 21, 24, 123, 588, 773, 886
FspBI CTAG 3 cut(s) 63, 132, 410
GlaI GCGC 1 cut(s) 771
GluI GCNGC 7 cut(s) 6, 21, 24, 123, 588, 773, 886
GsuI CTGGAG 2 cut(s) 261, 801
HaeIII GGCC 1 cut(s) 525
HapII CCGG 5 cut(s) 321, 609, 681, 750, 878
HgaI GACGC 1 cut(s) 645
HhaI GCGC 1 cut(s) 772
Hin1I GRCGYC 1 cut(s) 656
Hin1II CATG 2 cut(s) 307, 490
Hin6I GCGC 1 cut(s) 770
HinP1I GCGC 1 cut(s) 770
HinfI GANTC 2 cut(s) 258, 490
HpaII CCGG 5 cut(s) 321, 609, 681, 750, 878
HphI GGTGA 3 cut(s) 626, 628, 670
Hpy166II GTNNAC 1 cut(s) 636
Hpy188I TCNGA 3 cut(s) 361, 899, 925
Hpy188III TCNNGA 5 cut(s) 240, 289, 410, 487, 660
Hpy8I GTNNAC 1 cut(s) 636
Hpy99I CGWCG 2 cut(s) 236, 284
HpyAV CCTTC 5 cut(s) 248, 307, 382, 433, 930
HpyCH4III ACNGT 3 cut(s) 430, 553, 598
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 5 cut(s) 16, 37, 76, 151, 173
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 224, 741, 776
HpyF3I CTNAG 3 cut(s) 99, 857, 984
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 656
Hsp92II CATG 2 cut(s) 307, 490
HspAI GCGC 1 cut(s) 770
KpnI GGTACC 1 cut(s) 698
Kzo9I GATC 5 cut(s) 157, 356, 516, 849, 894
LmnI GCTCC 6 cut(s) 115, 242, 248, 609, 716, 749
Lsp1109I GCAGC 6 cut(s) 10, 17, 32, 109, 574, 759
LweI GCATC 1 cut(s) 178
MaeI CTAG 3 cut(s) 63, 132, 410
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 592, 862
MalI GATC 5 cut(s) 159, 358, 518, 851, 896
MbiI CCGCTC 1 cut(s) 885
MboI GATC 5 cut(s) 157, 356, 516, 849, 894
MboII GAAGA 3 cut(s) 120, 798, 859
MflI RGATCY 1 cut(s) 356
MhlI GDGCHC 1 cut(s) 527
MluCI AATT 1 cut(s) 576
MlyI GAGTC 1 cut(s) 484
MmeI TCCRAC 1 cut(s) 93
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 4 cut(s) 47, 178, 180, 308
MspA1I CMGCKG 3 cut(s) 23, 122, 779
MspCI CTTAAG 1 cut(s) 161
MspI CCGG 5 cut(s) 321, 609, 681, 750, 878
MspR9I CCNGG 2 cut(s) 381, 609
Mva1269I GAATGC 1 cut(s) 912
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 4 cut(s) 209, 224, 741, 776
NciI CCSGG 1 cut(s) 609
NdeII GATC 5 cut(s) 157, 356, 516, 849, 894
NlaIII CATG 2 cut(s) 307, 490
NmuCI GTSAC 1 cut(s) 862
OliI CACNNNNGTG 3 cut(s) 47, 178, 180
PagI TCATGA 1 cut(s) 486
PctI GAATGC 1 cut(s) 912
PfeI GAWTC 1 cut(s) 258
PinAI ACCGGT 1 cut(s) 749
PkrI GCNGC 7 cut(s) 7, 22, 25, 124, 589, 774, 887
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
Ppu21I YACGTR 1 cut(s) 391
PpuMI RGGWCCY 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspOMI GGGCCC 1 cut(s) 523
PspPI GGNCC 5 cut(s) 66, 84, 523, 524, 724
PspPPI RGGWCCY 1 cut(s) 84
PstI CTGCAG 1 cut(s) 78
PsuI RGATCY 1 cut(s) 356
PvuII CAGCTG 3 cut(s) 23, 122, 779
RsaI GTAC 2 cut(s) 389, 696
RsaNI GTAC 2 cut(s) 388, 695
RseI CAYNNNNRTG 4 cut(s) 47, 178, 180, 308
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 7 cut(s) 6, 21, 24, 123, 588, 773, 886
Sau3AI GATC 5 cut(s) 157, 356, 516, 849, 894
Sau96I GGNCC 5 cut(s) 66, 84, 523, 524, 724
SchI GAGTC 1 cut(s) 484
ScrFI CCNGG 2 cut(s) 381, 609
SduI GDGCHC 1 cut(s) 527
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 74
SinI GGWCC 3 cut(s) 66, 84, 724
SmiMI CAYNNNNRTG 4 cut(s) 47, 178, 180, 308
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SnaBI TACGTA 1 cut(s) 391
Sse9I AATT 1 cut(s) 576
SsiI CCGC 3 cut(s) 225, 764, 885
SspMI CTAG 3 cut(s) 63, 132, 410
StyD4I CCNGG 2 cut(s) 379, 607
StyI CCWWGG 3 cut(s) 810, 942, 967
TaaI ACNGT 3 cut(s) 430, 553, 598
TaiI ACGT 1 cut(s) 393
TaqI TCGA 3 cut(s) 519, 531, 561
TasI AATT 1 cut(s) 576
TauI GCSGC 1 cut(s) 888
TfiI GAWTC 1 cut(s) 258
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 861
TseFI GTSAC 1 cut(s) 862
TseI GCWGC 6 cut(s) 5, 20, 23, 122, 587, 772
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 1 cut(s) 822
TspRI CASTG 1 cut(s) 861
Vha464I CTTAAG 1 cut(s) 161
VpaK11BI GGWCC 3 cut(s) 66, 84, 724
XagI CCTNNNNNAGG 1 cut(s) 130
XbaI TCTAGA 1 cut(s) 409
XspI CTAG 3 cut(s) 63, 132, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.