AT3G51130

Uncharacterised protein family (UPF0183)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014288
Physical Location & Seq
Forward (+)
18994026 .. 18997590
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51130.1

Sequence Viewer

Length: 1233 bp
ATGAAAGATTACTCGAAGATCGGCGATAAACTTGTGATGCAGAGACCTAGACGACGTTTGGAAGGCACCGCCATGGGCGCCACCGTGTTCGATCTCCGTCCCGGCGTCGGCATCGGACCTTTCTCTATCGGAATGCCGATTTGTGAAGCATTTGCTCAAATAGAGCAGCAGCCTAACATATATGATGTTGTTCATGTTAAATACTACGACGAGGATCCTTTGAAACTGGATGTTGTTATTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAGAGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTACGCCACTTCTATGATTGGGGGTCCATCAACTCTGGCAACGTTTGTGGCTGTTTATGCACTTTTTGGACCAACCTTTCCTGGGATTTATGATAAAGAAAGAGGGATTTATTCTCTGTTCTACCCGGGGCTATCCTTCGAGTTTCCAATTCCAAACCAGTACACGGACTGCTGCCATGATGGAGAAGCGGCACTACCGTTAGAGTTTCCAGATGGCACCACACCAGTAACATGCCGGGTCTCTATATATGACAACTCAAGTGACAAAAAAGTTGGTGTCGGAAAATTGATGGATAGAGCTTCTGTTCCTCCTCTACCTCCTGGCAGTCTGTATATGGAAGAAGTTCATGTCAAGCCTGGCAAGGAACTATACTTTACTGTTGGAGGCCAGCATATGCCTTTTGGTGCATCACCACAGGATGTATGGACTGAATTAGGTCGACCTTGTGGGATCCACCCAAAGCAGGTAGATCAAATGGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGACTCACAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGCTGATTTCAACTCATACATAAAGTGCAACTTTGTGATTTCGGCTGGAGCGGATGCGGCAGAAGCAAACAGAAGTGGAAACAAGATCACTCCAAGCACTAACTGGGATCAGGTCAAGGAAATACTCGGGGAATGTGGGCCAGCAGCTATTCAGACGCAAGGCTCAACGAGCAACCCTTTTGGATCTACATATGTGTATGGCTATCAGAATGTTGCTTTTGAGGTGATGAAGAACGGTCATATAGCCACTATAACCTTGTTCCAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0183

Protein Analysis

410

Amino Acids

45.68

Weight (kDa)

6.06

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHAF1 PF03676 38 - 408 2.6e-141 Phagosome assembly factor 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51130
fragaria_vesca FvH4_1g12160 FvH4_1g12160 FvH4_1g12160
malus_domestica MD02G1111100.v1.1 MD15G1249000.v1.1
prunus_persica Prupe.7G165200_v2.0.a1
pyrus_communis pycom15g21910
rosa_chinensis RchiOBHm_Chr2g0099911
rosa_laevigata RLG00000016921
rosa_roxburghii Rroxscaffold_2G00142740
rosa_rugosa Rorug02G0083900
rosa_samantha Rh2AG132900 Rh2BG136300 Rh2CG138000 Rh2DG138400
rosa_wichuraiana Rw2G010340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 790
AccB1I GGYRCC 3 cut(s) 65, 77, 551
AccB7I CCANNNNNTGG 1 cut(s) 254
AccBSI CCGCTC 1 cut(s) 1013
AccI GTMKAC 1 cut(s) 775
AciI CCGC 5 cut(s) 69, 322, 524, 1013, 1019
AclI AACGTT 1 cut(s) 377
AclWI GGATC 8 cut(s) 209, 222, 269, 781, 794, 827, 1077, 1153
AcuI CTGAAG 1 cut(s) 311
AcyI GRCGYC 2 cut(s) 78, 105
AfaI GTAC 1 cut(s) 497
AfiI CCNNNNNNNGG 5 cut(s) 107, 254, 417, 499, 799
AgsI TTSAA 3 cut(s) 223, 305, 973
AjnI CCWGG 4 cut(s) 278, 415, 655, 691
AluBI AGCT 3 cut(s) 243, 635, 1109
AluI AGCT 3 cut(s) 243, 635, 1109
Alw26I GTCTC 4 cut(s) 37, 288, 580, 908
AlwI GGATC 8 cut(s) 209, 222, 269, 781, 794, 827, 1077, 1153
Ama87I CYCGRG 2 cut(s) 460, 1088
AoxI GGCC 2 cut(s) 721, 1100
ApeKI GCWGC 4 cut(s) 166, 169, 507, 1106
ArsI GACNNNNNNTTYG 2 cut(s) 887, 919
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 2 cut(s) 80, 336
AspS9I GGNCC 4 cut(s) 116, 359, 404, 1100
AsuC2I CCSGG 5 cut(s) 102, 461, 462, 572, 957
AsuHPI GGTGA 3 cut(s) 738, 872, 1198
AvaI CYCGRG 2 cut(s) 460, 1088
AvaII GGWCC 3 cut(s) 116, 359, 404
BamHI GGATCC 2 cut(s) 214, 786
BanI GGYRCC 3 cut(s) 65, 77, 551
BarI GAAGNNNNNNTAC 2 cut(s) 513, 545
BauI CACGAG 1 cut(s) 885
BbvI GCAGC 4 cut(s) 178, 181, 494, 1118
BccI CCATC 5 cut(s) 370, 509, 542, 619, 902
BceAI ACGGC 1 cut(s) 311
BciT130I CCWGG 4 cut(s) 280, 417, 657, 693
BcnI CCSGG 5 cut(s) 102, 461, 462, 572, 957
BcoDI GTCTC 4 cut(s) 37, 288, 580, 908
BfaI CTAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 790
BisI GCNGC 7 cut(s) 167, 170, 323, 508, 525, 1020, 1107
BlsI GCNGC 7 cut(s) 168, 171, 324, 509, 526, 1021, 1108
Bme1390I CCNGG 9 cut(s) 102, 280, 417, 461, 462, 572, 657, 693, 957
Bme18I GGWCC 3 cut(s) 116, 359, 404
BmeT110I CYCGRG 2 cut(s) 460, 1088
BmgT120I GGNCC 4 cut(s) 116, 359, 404, 1100
BmiI GGNNCC 6 cut(s) 67, 79, 216, 360, 553, 788
BmrFI CCNGG 9 cut(s) 102, 280, 417, 461, 462, 572, 657, 693, 957
BmrI ACTGGG 1 cut(s) 1075
BmsI GCATC 5 cut(s) 27, 120, 321, 752, 1006
BmuI ACTGGG 1 cut(s) 1075
BpmI CTGGAG 1 cut(s) 1029
BpuEI CTTGAG 1 cut(s) 577
BpuMI CCSGG 5 cut(s) 102, 461, 462, 572, 957
BsaHI GRCGYC 2 cut(s) 78, 105
BsaI GGTCTC 3 cut(s) 37, 288, 580
BsaJI CCNNGG 5 cut(s) 72, 278, 416, 460, 461
Bsc4I CCNNNNNNNGG 5 cut(s) 107, 254, 417, 499, 799
Bse1I ACTGG 5 cut(s) 231, 493, 560, 1070, 1225
BseBI CCWGG 4 cut(s) 280, 417, 657, 693
BseDI CCNNGG 5 cut(s) 72, 278, 416, 460, 461
BseGI GGATG 4 cut(s) 235, 760, 897, 1021
BseLI CCNNNNNNNGG 5 cut(s) 107, 254, 417, 499, 799
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 5 cut(s) 231, 493, 560, 1070, 1225
BseRI GAGGAG 1 cut(s) 636
BseXI GCAGC 4 cut(s) 178, 181, 494, 1118
BshFI GGCC 2 cut(s) 723, 1102
BshNI GGYRCC 3 cut(s) 65, 77, 551
BsiHKCI CYCGRG 2 cut(s) 460, 1088
BsiSI CCGG 4 cut(s) 102, 461, 571, 956
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 5 cut(s) 107, 254, 417, 499, 799
BsmAI GTCTC 4 cut(s) 37, 288, 580, 908
BsmFI GGGAC 1 cut(s) 84
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 2 cut(s) 723, 1102
Bso31I GGTCTC 3 cut(s) 37, 288, 580
BsoBI CYCGRG 2 cut(s) 460, 1088
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 5 cut(s) 69, 322, 524, 1013, 1019
BspANI GGCC 2 cut(s) 723, 1102
BspCNI CTCAG 1 cut(s) 298
BspHI TCATGA 1 cut(s) 1229
BspLI GGNNCC 6 cut(s) 67, 79, 216, 360, 553, 788
BspMI ACCTGC 1 cut(s) 790
BspPI GGATC 8 cut(s) 209, 222, 269, 781, 794, 827, 1077, 1153
BspT107I GGYRCC 3 cut(s) 65, 77, 551
BspTNI GGTCTC 3 cut(s) 37, 288, 580
BsrBI CCGCTC 1 cut(s) 1013
BsrI ACTGG 5 cut(s) 231, 493, 560, 1070, 1225
BssECI CCNNGG 5 cut(s) 72, 278, 416, 460, 461
BssNI GRCGYC 2 cut(s) 78, 105
BssSI CACGAG 1 cut(s) 885
BssT1I CCWWGG 1 cut(s) 72
Bst2BI CACGAG 1 cut(s) 885
Bst2UI CCWGG 4 cut(s) 280, 417, 657, 693
Bst4CI ACNGT 4 cut(s) 85, 534, 715, 1199
BstACI GRCGYC 2 cut(s) 78, 105
BstC8I GCNNGC 2 cut(s) 725, 1104
BstDEI CTNAG 1 cut(s) 285
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 4 cut(s) 235, 760, 897, 1021
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 2 cut(s) 80, 336
BstMAI GTCTC 4 cut(s) 37, 288, 580, 908
BstMWI GCNNNNNNNGC 6 cut(s) 77, 331, 392, 1019, 1025, 1131
BstNI CCWGG 4 cut(s) 280, 417, 657, 693
BstNSI RCATGY 1 cut(s) 570
BstSCI CCNGG 9 cut(s) 100, 278, 415, 459, 460, 570, 655, 691, 955
BstV1I GCAGC 4 cut(s) 178, 181, 494, 1118
BstX2I RGATCY 4 cut(s) 214, 786, 832, 1145
BstYI RGATCY 4 cut(s) 214, 786, 832, 1145
BsuRI GGCC 2 cut(s) 723, 1102
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 4 cut(s) 235, 760, 897, 1021
BveI ACCTGC 1 cut(s) 790
Cac8I GCNNGC 2 cut(s) 725, 1104
CciI TCATGA 1 cut(s) 1229
CfoI GCGC 2 cut(s) 80, 336
Cfr13I GGNCC 4 cut(s) 116, 359, 404, 1100
Cfr9I CCCGGG 1 cut(s) 460
CseI GACGC 3 cut(s) 94, 816, 1126
Csp6I GTAC 1 cut(s) 496
CspCI CAANNNNNGTGG 2 cut(s) 363, 398
CviAII CATG 8 cut(s) 73, 194, 254, 512, 567, 683, 962, 1230
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 1 cut(s) 285
DinI GGCGCC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 72
Eco31I GGTCTC 3 cut(s) 37, 288, 580
Eco47I GGWCC 3 cut(s) 116, 359, 404
Eco57I CTGAAG 1 cut(s) 311
Eco88I CYCGRG 2 cut(s) 460, 1088
EcoRII CCWGG 4 cut(s) 278, 415, 655, 691
EcoT14I CCWWGG 1 cut(s) 72
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 8 cut(s) 76, 197, 257, 515, 570, 686, 965, 1233
FalI AAGNNNNNCTT 2 cut(s) 977, 1009
FaqI GGGAC 1 cut(s) 84
FatI CATG 8 cut(s) 72, 193, 253, 511, 566, 682, 961, 1229
FauNDI CATATG 2 cut(s) 729, 1153
FblI GTMKAC 1 cut(s) 775
Fnu4HI GCNGC 7 cut(s) 167, 170, 323, 508, 525, 1020, 1107
FokI GGATG 4 cut(s) 242, 767, 884, 1028
Fsp4HI GCNGC 7 cut(s) 167, 170, 323, 508, 525, 1020, 1107
FspBI CTAG 1 cut(s) 48
GlaI GCGC 2 cut(s) 79, 335
GluI GCNGC 7 cut(s) 167, 170, 323, 508, 525, 1020, 1107
GsuI CTGGAG 1 cut(s) 1029
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 2 cut(s) 723, 1102
HapII CCGG 4 cut(s) 102, 461, 571, 956
HgaI GACGC 3 cut(s) 94, 816, 1126
HhaI GCGC 2 cut(s) 80, 336
Hin1I GRCGYC 2 cut(s) 78, 105
Hin1II CATG 8 cut(s) 76, 197, 257, 515, 570, 686, 965, 1233
Hin6I GCGC 2 cut(s) 78, 334
HinP1I GCGC 2 cut(s) 78, 334
HincII GTYRAC 1 cut(s) 776
HindII GTYRAC 1 cut(s) 776
HinfI GANTC 1 cut(s) 916
HpaII CCGG 4 cut(s) 102, 461, 571, 956
HphI GGTGA 3 cut(s) 738, 872, 1198
Hpy166II GTNNAC 2 cut(s) 498, 776
Hpy188I TCNGA 8 cut(s) 116, 131, 288, 330, 617, 832, 1116, 1170
Hpy188III TCNNGA 3 cut(s) 248, 545, 1230
Hpy8I GTNNAC 2 cut(s) 498, 776
Hpy99I CGWCG 3 cut(s) 57, 110, 212
HpyAV CCTTC 2 cut(s) 56, 481
HpyCH4III ACNGT 4 cut(s) 85, 534, 715, 1199
HpyCH4IV ACGT 2 cut(s) 55, 377
HpyCH4V TGCA 4 cut(s) 40, 395, 743, 990
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 331, 392, 1019, 1025, 1131
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 2 cut(s) 55, 377
Hsp92I GRCGYC 2 cut(s) 78, 105
Hsp92II CATG 8 cut(s) 76, 197, 257, 515, 570, 686, 965, 1233
HspAI GCGC 2 cut(s) 78, 334
KasI GGCGCC 1 cut(s) 77
LmnI GCTCC 1 cut(s) 1010
Lsp1109I GCAGC 4 cut(s) 178, 181, 494, 1118
LweI GCATC 5 cut(s) 27, 120, 321, 752, 1006
MaeI CTAG 1 cut(s) 48
MaeII ACGT 2 cut(s) 55, 377
MaeIII GTNAC 3 cut(s) 291, 562, 596
MbiI CCGCTC 1 cut(s) 1013
MboII GAAGA 5 cut(s) 28, 257, 686, 932, 1204
MflI RGATCY 4 cut(s) 214, 786, 832, 1145
MluCI AATT 3 cut(s) 483, 620, 767
Mly113I GGCGCC 1 cut(s) 78
MlyI GAGTC 1 cut(s) 910
MmeI TCCRAC 2 cut(s) 595, 697
MnlI CCTC 9 cut(s) 205, 282, 431, 654, 657, 663, 713, 846, 1177
MroXI GAANNNNTTC 1 cut(s) 678
MseI TTAA 2 cut(s) 198, 927
MslI CAYNNNNRTG 2 cut(s) 71, 347
MspI CCGG 4 cut(s) 102, 461, 571, 956
MspR9I CCNGG 9 cut(s) 102, 280, 417, 461, 462, 572, 657, 693, 957
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 4 cut(s) 280, 417, 657, 693
MwoI GCNNNNNNNGC 6 cut(s) 77, 331, 392, 1019, 1025, 1131
NarI GGCGCC 1 cut(s) 78
NciI CCSGG 5 cut(s) 102, 461, 462, 572, 957
NcoI CCATGG 1 cut(s) 72
NdeI CATATG 2 cut(s) 729, 1153
NlaIII CATG 8 cut(s) 76, 197, 257, 515, 570, 686, 965, 1233
NlaIV GGNNCC 6 cut(s) 67, 79, 216, 360, 553, 788
NmuCI GTSAC 1 cut(s) 596
NspI RCATGY 1 cut(s) 570
PagI TCATGA 1 cut(s) 1229
PctI GAATGC 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 678
PflMI CCANNNNNTGG 1 cut(s) 254
PkrI GCNGC 7 cut(s) 168, 171, 324, 509, 526, 1021, 1108
PleI GAGTC 1 cut(s) 910
PluTI GGCGCC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 910
Psp1406I AACGTT 1 cut(s) 377
Psp6I CCWGG 4 cut(s) 278, 415, 655, 691
PspGI CCWGG 4 cut(s) 278, 415, 655, 691
PspN4I GGNNCC 6 cut(s) 67, 79, 216, 360, 553, 788
PspPI GGNCC 4 cut(s) 116, 359, 404, 1100
PsuI RGATCY 4 cut(s) 214, 786, 832, 1145
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
RseI CAYNNNNRTG 2 cut(s) 71, 347
SalI GTCGAC 1 cut(s) 774
SaqAI TTAA 2 cut(s) 198, 927
SatI GCNGC 7 cut(s) 167, 170, 323, 508, 525, 1020, 1107
Sau96I GGNCC 4 cut(s) 116, 359, 404, 1100
SchI GAGTC 1 cut(s) 910
ScrFI CCNGG 9 cut(s) 102, 280, 417, 461, 462, 572, 657, 693, 957
SfaNI GCATC 5 cut(s) 27, 120, 321, 752, 1006
SfoI GGCGCC 1 cut(s) 79
SinI GGWCC 3 cut(s) 116, 359, 404
SmaI CCCGGG 1 cut(s) 462
SmiMI CAYNNNNRTG 2 cut(s) 71, 347
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
Sse9I AATT 3 cut(s) 483, 620, 767
SsiI CCGC 5 cut(s) 69, 322, 524, 1013, 1019
SspDI GGCGCC 1 cut(s) 77
SspI AATATT 1 cut(s) 309
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 9 cut(s) 100, 278, 415, 459, 460, 570, 655, 691, 955
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 4 cut(s) 85, 534, 715, 1199
TaiI ACGT 2 cut(s) 58, 380
TaqI TCGA 6 cut(s) 14, 90, 268, 474, 775, 838
TasI AATT 3 cut(s) 483, 620, 767
TatI WGTACW 1 cut(s) 495
TauI GCSGC 3 cut(s) 325, 527, 1022
Tru1I TTAA 2 cut(s) 198, 927
Tru9I TTAA 2 cut(s) 198, 927
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 4 cut(s) 166, 169, 507, 1106
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 6 cut(s) 17, 182, 251, 671, 809, 1205
TspGWI ACGGA 2 cut(s) 86, 515
TspMI CCCGGG 1 cut(s) 460
Van91I CCANNNNNTGG 1 cut(s) 254
VpaK11BI GGWCC 3 cut(s) 116, 359, 404
XceI RCATGY 1 cut(s) 570
XcmI CCANNNNNNNNNTGG 2 cut(s) 756, 1062
XmaI CCCGGG 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 775
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.