MD15G1249000.v1.1

UPF0183 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014288
Physical Location & Seq
Reverse (-)
20761860 .. 20766363
4504 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1249000.v1.1.491

Sequence Viewer

Length: 1302 bp
ATGTTGCAGAGACCTCGACGCCGCTGCGAAGGCACCGCCATGGGCGCCATCGTCCTCGATCTACGACCCGGCCTCGGAATCGGACCCTTCACCATCGGAATGCCGATATGCGAAGCATTTGCTCAGATAGAACAGGAGCCTAACATTTACGACGTTGTCCATGTGAAGTATTATGATGAGGAGCCCCTTAAGTTGGATATCGTTATCAGCTTTCCAGATCATGGTTTTCATCTTCGCTTTGATCCTTGGTCACAGAGGCTACGCCTTGTTGAAATATTTGATATAAAACGGCTTCAAATGCGCTATGCCACTTCTTTGATTGGGGGACCATCCACTCTAGCAACTTTTGTAGCTGTATATGCACTATTTGGGCCAACTTTCCCTGGAATTTATGACAAGGATAGAGGTGTCTACACTCTGTTTTACCCAGGGCTTTCCTTTGCTTTTCCAATTCCAAGCCAGTATACAGATTGCTGCCATGATAGAGAAGCGGAATTACCATTAGAGTTTCCAGATGGAACCACACCAGTGACGTGCCGCGTCTCCATATACGATAGTTCTACAGATAAAAAAGTTGGTGTGGGGTCCTTAATGGATAAGGCTTCCGCTCCTCCATTACCTGTTGGCAGCCTCTATATGGAAGAGGTGCATGTTAAGCTAGGGGAAGAGTTATACTTTACTGTTGGTGGTCAGAATATTCCTTTTGGTGCATCACCTCAGGATGTTTGGACTGAATTGGGTCGTCCTTGTGGGATACATCAAAAGCAGGTAGACCAAATGGTTATTCATTCTGGCTTGGACACGCGCCCACGGACAACTCTTTGTGGCGATTATTTCTACAATTACTTTACCCGTGGTTTGGACATTTTATTTGATGGGCAGACTCATAAAATCAAGAAGTTTGTTTTGCATACAAACTATCCTGGCCATGCAGATTTCAACTCGTACATAAAGTGCAATTTTGTCATCTTTGCTTCTGATTGGGGTTCTTATCAGGATGTAAATAACTGCAAACATAGGATTACACCAAGCACAAAGTGGGAGCAAGTGAAGGAATTCCTCGGGGACTGTGGCCGAGCTGCTATCCAGACTCAAGGTTCTACAAGCAATCCGTTTGGATCTACTTTTGTATATGGTTATCAAAATGCTGCATTTGAGGTGATGAAGAATGGTTACATTGCCACTGTGACTCTTTTCCAGTCGTCTTGGATGATGGCACTTCAACAGCTGGTGAAAGCGGCAAATACTGTTTGTAGATGTCAGCTTGGCCGGGATCAACAATTGTACAGTTGTATATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0183

Protein Analysis

434

Amino Acids

48.78

Weight (kDa)

6.13

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHAF1 PF03676 27 - 399 1.5e-139 Phagosome assembly factor 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51130
fragaria_vesca FvH4_1g12160 FvH4_1g12160 FvH4_1g12160
malus_domestica MD02G1111100.v1.1 MD15G1249000.v1.1
prunus_persica Prupe.7G165200_v2.0.a1
pyrus_communis pycom15g21910
rosa_chinensis RchiOBHm_Chr2g0099911
rosa_laevigata RLG00000016921
rosa_roxburghii Rroxscaffold_2G00142740
rosa_rugosa Rorug02G0083900
rosa_samantha Rh2AG132900 Rh2BG136300 Rh2CG138000 Rh2DG138400
rosa_wichuraiana Rw2G010340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 757
AccB1I GGYRCC 2 cut(s) 32, 44
AccB7I CCANNNNNTGG 1 cut(s) 221
AccBSI CCGCTC 1 cut(s) 608
AccI GTMKAC 3 cut(s) 411, 464, 771
AccII CGCG 2 cut(s) 540, 805
AciI CCGC 6 cut(s) 22, 36, 491, 538, 606, 1238
AclWI GGATC 3 cut(s) 236, 1126, 1281
AcoI YGGCCR 3 cut(s) 925, 1072, 1267
AcsI RAATTY 2 cut(s) 387, 1055
AcyI GRCGYC 2 cut(s) 19, 45
AdeI CACNNNGTG 1 cut(s) 1038
AfaI GTAC 2 cut(s) 947, 1286
AfiI CCNNNNNNNGG 5 cut(s) 74, 193, 221, 637, 859
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 4 cut(s) 272, 296, 940, 1223
AjiI CACGTC 1 cut(s) 534
AjnI CCWGG 3 cut(s) 382, 427, 922
AjuI GAANNNNNNNTTGG 2 cut(s) 768, 800
AleI CACNNNNGTG 1 cut(s) 527
AluBI AGCT 6 cut(s) 210, 353, 658, 1079, 1228, 1264
AluI AGCT 6 cut(s) 210, 353, 658, 1079, 1228, 1264
Alw26I GTCTC 2 cut(s) 4, 547
AlwI GGATC 3 cut(s) 236, 1126, 1281
Ama87I CYCGRG 1 cut(s) 1061
AoxI GGCC 5 cut(s) 70, 371, 925, 1072, 1267
ApeKI GCWGC 5 cut(s) 24, 474, 627, 1079, 1148
ApoI RAATTY 2 cut(s) 387, 1055
ArsI GACNNNNNNTTYG 2 cut(s) 854, 886
Asp700I GAANNNNTTC 1 cut(s) 1055
AspLEI GCGC 3 cut(s) 47, 303, 807
AspS9I GGNCC 4 cut(s) 83, 326, 371, 585
AsuC2I CCSGG 2 cut(s) 69, 1271
AsuHPI GGTGA 4 cut(s) 82, 705, 1171, 1243
AvaI CYCGRG 1 cut(s) 1061
AvaII GGWCC 3 cut(s) 83, 326, 585
AxyI CCTNAGG 1 cut(s) 717
BalI TGGCCA 1 cut(s) 927
BanI GGYRCC 2 cut(s) 32, 44
BanII GRGCYC 1 cut(s) 186
BarI GAAGNNNNNNTAC 4 cut(s) 480, 512, 1157, 1189
BbvI GCAGC 5 cut(s) 11, 461, 639, 1066, 1135
BccI CCATC 6 cut(s) 56, 101, 337, 509, 869, 1207
BceAI ACGGC 1 cut(s) 305
BcgI CGANNNNNNTGC 5 cut(s) 6, 30, 40, 101, 135
BciT130I CCWGG 3 cut(s) 384, 429, 924
BciVI GTATCC 1 cut(s) 747
BcnI CCSGG 2 cut(s) 69, 1271
BcoDI GTCTC 2 cut(s) 4, 547
BfaI CTAG 2 cut(s) 338, 659
BfmI CTRYAG 1 cut(s) 561
BfoI RGCGCY 1 cut(s) 48
BfrI CTTAAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 757
BfuI GTATCC 1 cut(s) 747
BisI GCNGC 8 cut(s) 22, 25, 475, 538, 628, 1080, 1149, 1239
BlsI GCNGC 8 cut(s) 23, 26, 476, 539, 629, 1081, 1150, 1240
Bme1390I CCNGG 5 cut(s) 69, 384, 429, 924, 1271
Bme18I GGWCC 3 cut(s) 83, 326, 585
BmeT110I CYCGRG 1 cut(s) 1061
BmgBI CACGTC 1 cut(s) 534
BmgT120I GGNCC 4 cut(s) 83, 326, 371, 585
BmiI GGNNCC 8 cut(s) 34, 46, 85, 138, 183, 327, 520, 586
BmrFI CCNGG 5 cut(s) 69, 384, 429, 924, 1271
BmsI GCATC 1 cut(s) 719
BpuEI CTTGAG 1 cut(s) 1077
BpuMI CCSGG 2 cut(s) 69, 1271
BsaHI GRCGYC 2 cut(s) 19, 45
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 9 cut(s) 39, 73, 245, 382, 427, 428, 809, 853, 1060
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 193, 221, 637, 859
Bse1I ACTGG 3 cut(s) 460, 527, 1198
Bse21I CCTNAGG 1 cut(s) 717
Bse3DI GCAATG 1 cut(s) 1176
BseBI CCWGG 3 cut(s) 384, 429, 924
BseDI CCNNGG 9 cut(s) 39, 73, 245, 382, 427, 428, 809, 853, 1060
BseGI GGATG 4 cut(s) 329, 727, 1003, 1215
BseLI CCNNNNNNNGG 5 cut(s) 74, 193, 221, 637, 859
BseMI GCAATG 1 cut(s) 1176
BseMII CTCAG 2 cut(s) 137, 731
BseNI ACTGG 3 cut(s) 460, 527, 1198
BseRI GAGGAG 2 cut(s) 194, 600
BseXI GCAGC 5 cut(s) 11, 461, 639, 1066, 1135
Bsh1236I CGCG 2 cut(s) 540, 805
BshFI GGCC 5 cut(s) 72, 373, 927, 1074, 1269
BshNI GGYRCC 2 cut(s) 32, 44
BsiHKCI CYCGRG 1 cut(s) 1061
BsiSI CCGG 2 cut(s) 69, 1270
BslFI GGGAC 2 cut(s) 339, 1079
BslI CCNNNNNNNGG 5 cut(s) 74, 193, 221, 637, 859
BsmAI GTCTC 2 cut(s) 4, 547
BsmBI CGTCTC 1 cut(s) 547
BsmFI GGGAC 2 cut(s) 339, 1079
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 5 cut(s) 72, 373, 927, 1074, 1269
Bso31I GGTCTC 1 cut(s) 4
BsoBI CYCGRG 1 cut(s) 1061
Bsp1286I GDGCHC 1 cut(s) 186
Bsp1407I TGTACA 1 cut(s) 1284
Bsp143I GATC 5 cut(s) 58, 217, 241, 1118, 1273
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 6 cut(s) 22, 36, 491, 538, 606, 1238
BspANI GGCC 5 cut(s) 72, 373, 927, 1074, 1269
BspCNI CTCAG 2 cut(s) 136, 730
BspFNI CGCG 2 cut(s) 540, 805
BspLI GGNNCC 8 cut(s) 34, 46, 85, 138, 183, 327, 520, 586
BspMI ACCTGC 1 cut(s) 757
BspPI GGATC 3 cut(s) 236, 1126, 1281
BspT107I GGYRCC 2 cut(s) 32, 44
BspTI CTTAAG 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 608
BsrDI GCAATG 1 cut(s) 1176
BsrGI TGTACA 1 cut(s) 1284
BsrI ACTGG 3 cut(s) 460, 527, 1198
BssECI CCNNGG 9 cut(s) 39, 73, 245, 382, 427, 428, 809, 853, 1060
BssMI GATC 5 cut(s) 58, 217, 241, 1118, 1273
BssNAI GTATAC 1 cut(s) 465
BssNI GRCGYC 2 cut(s) 19, 45
BssT1I CCWWGG 2 cut(s) 39, 245
Bst1107I GTATAC 1 cut(s) 465
Bst2UI CCWGG 3 cut(s) 384, 429, 924
Bst4CI ACNGT 5 cut(s) 682, 1070, 1186, 1249, 1289
Bst6I CTCTTC 2 cut(s) 636, 660
BstACI GRCGYC 2 cut(s) 19, 45
BstAFI CTTAAG 1 cut(s) 188
BstAUI TGTACA 1 cut(s) 1284
BstDEI CTNAG 2 cut(s) 123, 717
BstDSI CCRYGG 3 cut(s) 39, 809, 853
BstF5I GGATG 4 cut(s) 329, 727, 1003, 1215
BstFNI CGCG 2 cut(s) 540, 805
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 3 cut(s) 47, 303, 807
BstKTI GATC 5 cut(s) 61, 220, 244, 1121, 1276
BstMAI GTCTC 2 cut(s) 4, 547
BstMBI GATC 5 cut(s) 58, 217, 241, 1118, 1273
BstMWI GCNNNNNNNGC 5 cut(s) 30, 44, 298, 359, 655
BstNI CCWGG 3 cut(s) 384, 429, 924
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 5 cut(s) 67, 382, 427, 922, 1269
BstSFI CTRYAG 1 cut(s) 561
BstUI CGCG 2 cut(s) 540, 805
BstV1I GCAGC 5 cut(s) 11, 461, 639, 1066, 1135
BstX2I RGATCY 1 cut(s) 1118
BstYI RGATCY 1 cut(s) 1118
BstZ17I GTATAC 1 cut(s) 465
Bsu36I CCTNAGG 1 cut(s) 717
BsuI GTATCC 1 cut(s) 747
BsuRI GGCC 5 cut(s) 72, 373, 927, 1074, 1269
BtgI CCRYGG 3 cut(s) 39, 809, 853
BtrI CACGTC 1 cut(s) 534
BtsCI GGATG 4 cut(s) 329, 727, 1003, 1215
BtsIMutI CAGTG 2 cut(s) 534, 1182
BveI ACCTGC 1 cut(s) 757
CfoI GCGC 3 cut(s) 47, 303, 807
Cfr13I GGNCC 4 cut(s) 83, 326, 371, 585
CseI GACGC 2 cut(s) 27, 529
Csp6I GTAC 2 cut(s) 946, 1285
CviAII CATG 6 cut(s) 40, 161, 221, 479, 650, 929
CviQI GTAC 2 cut(s) 946, 1285
DdeI CTNAG 2 cut(s) 123, 717
DinI GGCGCC 1 cut(s) 46
DpnI GATC 5 cut(s) 60, 219, 243, 1120, 1275
DpnII GATC 5 cut(s) 58, 217, 241, 1118, 1273
DraIII CACNNNGTG 1 cut(s) 1038
EaeI YGGCCR 3 cut(s) 925, 1072, 1267
Eam1104I CTCTTC 2 cut(s) 636, 660
EarI CTCTTC 2 cut(s) 636, 660
Eco130I CCWWGG 2 cut(s) 39, 245
Eco24I GRGCYC 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 4
Eco32I GATATC 1 cut(s) 199
Eco47I GGWCC 3 cut(s) 83, 326, 585
Eco81I CCTNAGG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 1061
EcoO109I RGGNCCY 1 cut(s) 585
EcoRI GAATTC 1 cut(s) 1055
EcoRII CCWGG 3 cut(s) 382, 427, 922
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 2 cut(s) 39, 245
EcoT38I GRGCYC 1 cut(s) 186
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 2 cut(s) 39, 245
Esp3I CGTCTC 1 cut(s) 547
FaeI CATG 6 cut(s) 43, 164, 224, 482, 653, 932
FaqI GGGAC 2 cut(s) 339, 1079
FatI CATG 6 cut(s) 39, 160, 220, 478, 649, 928
FblI GTMKAC 3 cut(s) 411, 464, 771
Fnu4HI GCNGC 8 cut(s) 22, 25, 475, 538, 628, 1080, 1149, 1239
FokI GGATG 4 cut(s) 316, 734, 1010, 1222
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 8 cut(s) 22, 25, 475, 538, 628, 1080, 1149, 1239
FspBI CTAG 2 cut(s) 338, 659
GlaI GCGC 3 cut(s) 46, 302, 806
GluI GCNGC 8 cut(s) 22, 25, 475, 538, 628, 1080, 1149, 1239
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 5 cut(s) 72, 373, 927, 1074, 1269
HapII CCGG 2 cut(s) 69, 1270
HgaI GACGC 2 cut(s) 27, 529
HhaI GCGC 3 cut(s) 47, 303, 807
Hin1I GRCGYC 2 cut(s) 19, 45
Hin1II CATG 6 cut(s) 43, 164, 224, 482, 653, 932
Hin6I GCGC 3 cut(s) 45, 301, 805
HinP1I GCGC 3 cut(s) 45, 301, 805
HinfI GANTC 4 cut(s) 78, 883, 1090, 1189
HpaII CCGG 2 cut(s) 69, 1270
HphI GGTGA 4 cut(s) 82, 705, 1171, 1243
Hpy166II GTNNAC 3 cut(s) 412, 465, 772
Hpy188I TCNGA 6 cut(s) 77, 83, 98, 126, 693, 979
Hpy188III TCNNGA 6 cut(s) 215, 512, 719, 895, 995, 1087
Hpy8I GTNNAC 3 cut(s) 412, 465, 772
Hpy99I CGWCG 2 cut(s) 21, 155
HpyAV CCTTC 3 cut(s) 23, 97, 1045
HpyCH4III ACNGT 5 cut(s) 682, 1070, 1186, 1249, 1289
HpyCH4IV ACGT 2 cut(s) 153, 533
HpyCH4V TGCA 9 cut(s) 7, 362, 649, 710, 910, 932, 957, 1011, 1151
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 44, 298, 359, 655
HpyF3I CTNAG 2 cut(s) 123, 717
HpySE526I ACGT 2 cut(s) 153, 533
Hsp92I GRCGYC 2 cut(s) 19, 45
Hsp92II CATG 6 cut(s) 43, 164, 224, 482, 653, 932
HspAI GCGC 3 cut(s) 45, 301, 805
KasI GGCGCC 1 cut(s) 44
Kzo9I GATC 5 cut(s) 58, 217, 241, 1118, 1273
LmnI GCTCC 4 cut(s) 136, 181, 613, 1042
Lsp1109I GCAGC 5 cut(s) 11, 461, 639, 1066, 1135
LweI GCATC 1 cut(s) 719
MaeI CTAG 2 cut(s) 338, 659
MaeII ACGT 2 cut(s) 153, 533
MaeIII GTNAC 4 cut(s) 249, 529, 1172, 1186
MalI GATC 5 cut(s) 60, 219, 243, 1120, 1275
MbiI CCGCTC 1 cut(s) 608
MboI GATC 5 cut(s) 58, 217, 241, 1118, 1273
MboII GAAGA 4 cut(s) 224, 653, 677, 1177
MfeI CAATTG 1 cut(s) 1280
MflI RGATCY 1 cut(s) 1118
MhlI GDGCHC 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 927
MluCI AATT 8 cut(s) 387, 450, 494, 734, 841, 958, 1055, 1280
MluNI TGGCCA 1 cut(s) 927
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 3 cut(s) 877, 1084, 1183
MmeI TCCRAC 1 cut(s) 174
Mox20I TGGCCA 1 cut(s) 927
MroXI GAANNNNTTC 1 cut(s) 1055
MscI TGGCCA 1 cut(s) 927
MseI TTAA 4 cut(s) 189, 590, 654, 1300
MslI CAYNNNNRTG 3 cut(s) 38, 98, 527
Msp20I TGGCCA 1 cut(s) 927
MspA1I CMGCKG 2 cut(s) 24, 1228
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 2 cut(s) 69, 1270
MspR9I CCNGG 5 cut(s) 69, 384, 429, 924, 1271
MunI CAATTG 1 cut(s) 1280
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 3 cut(s) 384, 429, 924
MvnI CGCG 2 cut(s) 540, 805
MwoI GCNNNNNNNGC 5 cut(s) 30, 44, 298, 359, 655
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 2 cut(s) 69, 1271
NcoI CCATGG 1 cut(s) 39
NdeII GATC 5 cut(s) 58, 217, 241, 1118, 1273
NlaIII CATG 6 cut(s) 43, 164, 224, 482, 653, 932
NlaIV GGNNCC 8 cut(s) 34, 46, 85, 138, 183, 327, 520, 586
NmeAIII GCCGAG 1 cut(s) 1100
NmuCI GTSAC 3 cut(s) 249, 529, 1186
NspI RCATGY 1 cut(s) 653
OliI CACNNNNGTG 1 cut(s) 527
PasI CCCWGGG 1 cut(s) 428
PctI GAATGC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 1055
PfeI GAWTC 1 cut(s) 78
PflFI GACNNNGTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 221
PkrI GCNGC 8 cut(s) 23, 26, 476, 539, 629, 1081, 1150, 1240
PleI GAGTC 3 cut(s) 877, 1084, 1183
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 3 cut(s) 877, 1084, 1183
PpuMI RGGWCCY 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 585
Psp6I CCWGG 3 cut(s) 382, 427, 922
PspGI CCWGG 3 cut(s) 382, 427, 922
PspN4I GGNNCC 8 cut(s) 34, 46, 85, 138, 183, 327, 520, 586
PspPI GGNCC 4 cut(s) 83, 326, 371, 585
PspPPI RGGWCCY 1 cut(s) 585
PsuI RGATCY 1 cut(s) 1118
PsyI GACNNNGTC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 1228
RsaI GTAC 2 cut(s) 947, 1286
RsaNI GTAC 2 cut(s) 946, 1285
RseI CAYNNNNRTG 3 cut(s) 38, 98, 527
SaqAI TTAA 4 cut(s) 189, 590, 654, 1300
SatI GCNGC 8 cut(s) 22, 25, 475, 538, 628, 1080, 1149, 1239
Sau3AI GATC 5 cut(s) 58, 217, 241, 1118, 1273
Sau96I GGNCC 4 cut(s) 83, 326, 371, 585
SchI GAGTC 3 cut(s) 877, 1084, 1183
ScrFI CCNGG 5 cut(s) 69, 384, 429, 924, 1271
SduI GDGCHC 1 cut(s) 186
SfaNI GCATC 1 cut(s) 719
SfcI CTRYAG 1 cut(s) 561
SfoI GGCGCC 1 cut(s) 46
SinI GGWCC 3 cut(s) 83, 326, 585
SmiMI CAYNNNNRTG 3 cut(s) 38, 98, 527
SmlI CTYRAG 2 cut(s) 188, 1092
SmoI CTYRAG 2 cut(s) 188, 1092
Sse9I AATT 8 cut(s) 387, 450, 494, 734, 841, 958, 1055, 1280
SsiI CCGC 6 cut(s) 22, 36, 491, 538, 606, 1238
SspDI GGCGCC 1 cut(s) 44
SspI AATATT 2 cut(s) 276, 697
SspMI CTAG 2 cut(s) 338, 659
StyD4I CCNGG 5 cut(s) 67, 382, 427, 922, 1269
StyI CCWWGG 2 cut(s) 39, 245
TaaI ACNGT 5 cut(s) 682, 1070, 1186, 1249, 1289
TaiI ACGT 2 cut(s) 156, 536
TaqI TCGA 2 cut(s) 16, 57
TasI AATT 8 cut(s) 387, 450, 494, 734, 841, 958, 1055, 1280
TatI WGTACW 1 cut(s) 1284
TauI GCSGC 3 cut(s) 24, 540, 1241
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 4 cut(s) 189, 590, 654, 1300
Tru9I TTAA 4 cut(s) 189, 590, 654, 1300
TscAI CASTG 2 cut(s) 534, 1189
TseFI GTSAC 3 cut(s) 249, 529, 1186
TseI GCWGC 5 cut(s) 24, 474, 627, 1079, 1148
Tsp45I GTSAC 3 cut(s) 249, 529, 1186
TspDTI ATGAA 3 cut(s) 218, 776, 1178
TspGWI ACGGA 2 cut(s) 826, 1101
TspRI CASTG 2 cut(s) 534, 1189
Tth111I GACNNNGTC 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 221
Vha464I CTTAAG 1 cut(s) 188
VpaK11BI GGWCC 3 cut(s) 83, 326, 585
XapI RAATTY 2 cut(s) 387, 1055
XceI RCATGY 1 cut(s) 653
XcmI CCANNNNNNNNNTGG 1 cut(s) 1035
XmiI GTMKAC 3 cut(s) 411, 464, 771
XmnI GAANNNNTTC 1 cut(s) 1055
XspI CTAG 2 cut(s) 338, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.