Rroxscaffold_2G00142740

UPF0183 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014288
Physical Location & Seq
Forward (+)
80828839 .. 80832811
3973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00142740.1

Sequence Viewer

Length: 1170 bp
ATGGGCGCCATCGTCCTCGATCTTCGTCCCGGCTTCGGAATCGGACCTTTCTCTCTCGGAATGCCGATATGCGAAGCGTTTGCTCAGATAGAGCAGCAGCCTAACATCTATGATGTTGTTCATGTCAAGTATTATGATGAGGAGCCTCTTAAGTTGGACATTGTTATCAGCTTTCCTGATCATGGTTTCCATCTGCGATTTGATCCTTGGTCACAGAGACTCCGCCTTGTTGAAATATTTGACATAAAGAGGCTTCAGATGCGCTATGCCACGTCTTTGATTGGAGGGCCATCCACTCTGGCGACTTTTGTAGCTGTTTATGCCTTGTTTGGGCCAACATTTCCTGGAATTTATGATCAAGATAGAGGTGTCTACAATCTATTTTACCCAGGGCTTTCCTTTGCTTTTCCTATTCCTAGCCAGTATACAGATTGCGTTCATGATAGAGAAGCGGAACTGCCTCTAGAGTTCCCGGATGGAACTACACCAGTTACTTGCCGTGTGTCCATATACGATAGTTCTACCGATAAAAAAGTTGGTGTCGGATCCTTGATGGATAAGGCTTCTGCTCCTCTATTACCTAATGGCAGTGTCTATATGGAAGAGGTGCATGTCAAGCTAGCGGAAGAACTACACTTCACTGTTGGGGGCCAGAATATTCCTTTTGGTGCATCACCTCAGGATGTTTGGACTGAATTGGGTCGTCCTTGTGGGATACATCAAAAGCAGGTAGACCAAATGGTCATTCATTCTGGCTCGGATCCTCGCCCACGGACAACATTGTGTGGTGATTACTTCTACAATTACTTTACCCGTGGTTTGGACATTTTATTTGATGGGCAGACTCATAAAGTCAAGAAGTTTGTTCTGCATACAAATTATCCTGGTCATGCTGATTTCAATTCATATATAAAGTGCAACTTTGTCATCTTTGCTTCTGAGTTTGGGGGTTCTTTTCAGGAGGGAAATAATTGCAAGCACAAGATTACACCAAGTACAAAGTGGGAGCATGTAAAGGAAATTCTTGGGGACTGTGGTCGAGCTGCCATCCAGACACAAGGTTCTACAAGCAATCCGTTTGGATCTACTTTTGTATATGGTTATCAAAACATTGCACTTGAGGTGATGAAGAATGGTTACATTGCAACAGTGACTCTCTTTCAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0183

Protein Analysis

389

Amino Acids

43.51

Weight (kDa)

5.69

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHAF1 PF03676 14 - 387 5.3e-140 Phagosome assembly factor 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51130
fragaria_vesca FvH4_1g12160 FvH4_1g12160 FvH4_1g12160
malus_domestica MD02G1111100.v1.1 MD15G1249000.v1.1
prunus_persica Prupe.7G165200_v2.0.a1
pyrus_communis pycom15g21910
rosa_chinensis RchiOBHm_Chr2g0099911
rosa_laevigata RLG00000016921
rosa_roxburghii Rroxscaffold_2G00142740
rosa_rugosa Rorug02G0083900
rosa_samantha Rh2AG132900 Rh2BG136300 Rh2CG138000 Rh2DG138400
rosa_wichuraiana Rw2G010340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 740
Acc36I ACCTGC 1 cut(s) 718
AccB1I GGYRCC 1 cut(s) 5
AccI GTMKAC 3 cut(s) 372, 425, 732
AciI CCGC 3 cut(s) 223, 452, 623
AclWI GGATC 6 cut(s) 197, 540, 553, 755, 768, 1090
AcsI RAATTY 2 cut(s) 348, 1020
AcuI CTGAAG 1 cut(s) 239
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 1 cut(s) 997
AfiI CCNNNNNNNGG 4 cut(s) 35, 182, 330, 820
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 233, 901
AjiI CACGTC 1 cut(s) 273
AjnI CCWGG 3 cut(s) 343, 388, 883
AjuI GAANNNNNNNTTGG 2 cut(s) 729, 761
AluBI AGCT 4 cut(s) 171, 314, 619, 1043
AluI AGCT 4 cut(s) 171, 314, 619, 1043
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 6 cut(s) 197, 540, 553, 755, 768, 1090
AoxI GGCC 3 cut(s) 287, 332, 649
ApeKI GCWGC 3 cut(s) 94, 97, 1043
ApoI RAATTY 2 cut(s) 348, 1020
ArsI GACNNNNNNTTYG 2 cut(s) 815, 847
AspLEI GCGC 2 cut(s) 8, 264
AspS9I GGNCC 4 cut(s) 44, 287, 332, 649
AsuC2I CCSGG 2 cut(s) 30, 473
AsuHPI GGTGA 3 cut(s) 666, 800, 1135
AsuNHI GCTAGC 1 cut(s) 619
AvaII GGWCC 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 678
BamHI GGATCC 2 cut(s) 545, 760
BanI GGYRCC 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 1121, 1153
BbvI GCAGC 3 cut(s) 106, 109, 1030
BccI CCATC 7 cut(s) 17, 198, 298, 470, 547, 830, 1055
BceAI ACGGC 1 cut(s) 483
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 3 cut(s) 345, 390, 885
BciVI GTATCC 1 cut(s) 708
BclI TGATCA 2 cut(s) 178, 355
BcnI CCSGG 2 cut(s) 30, 473
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 3 cut(s) 417, 464, 620
BfoI RGCGCY 1 cut(s) 9
BfrI CTTAAG 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 718
BfuI GTATCC 1 cut(s) 708
BisI GCNGC 3 cut(s) 95, 98, 1044
BlsI GCNGC 3 cut(s) 96, 99, 1045
Bme1390I CCNGG 5 cut(s) 30, 345, 390, 473, 885
Bme18I GGWCC 1 cut(s) 44
BmgBI CACGTC 1 cut(s) 273
BmgT120I GGNCC 4 cut(s) 44, 287, 332, 649
BmiI GGNNCC 5 cut(s) 7, 144, 547, 650, 762
BmrFI CCNGG 5 cut(s) 30, 345, 390, 473, 885
BmsI GCATC 2 cut(s) 249, 680
BmtI GCTAGC 1 cut(s) 623
BoxI GACNNNNGTC 1 cut(s) 1035
BpuEI CTTGAG 1 cut(s) 1139
BpuMI CCSGG 2 cut(s) 30, 473
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 5 cut(s) 206, 388, 389, 770, 814
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 182, 330, 820
Bse1I ACTGG 2 cut(s) 421, 488
Bse21I CCTNAGG 1 cut(s) 678
Bse3DI GCAATG 2 cut(s) 1110, 1140
BseBI CCWGG 3 cut(s) 345, 390, 885
BseDI CCNNGG 5 cut(s) 206, 388, 389, 770, 814
BseGI GGATG 4 cut(s) 290, 481, 688, 1047
BseLI CCNNNNNNNGG 4 cut(s) 35, 182, 330, 820
BseMI GCAATG 2 cut(s) 1110, 1140
BseMII CTCAG 3 cut(s) 98, 692, 930
BseNI ACTGG 2 cut(s) 421, 488
BseRI GAGGAG 2 cut(s) 155, 561
BseXI GCAGC 3 cut(s) 106, 109, 1030
BshFI GGCC 3 cut(s) 289, 334, 651
BshNI GGYRCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 30, 473
BslFI GGGAC 2 cut(s) 12, 1043
BslI CCNNNNNNNGG 4 cut(s) 35, 182, 330, 820
BsmAI GTCTC 1 cut(s) 211
BsmFI GGGAC 2 cut(s) 12, 1043
BsmI GAATGC 1 cut(s) 66
BsnI GGCC 3 cut(s) 289, 334, 651
Bsp143I GATC 7 cut(s) 19, 178, 202, 355, 545, 760, 1082
BspACI CCGC 3 cut(s) 223, 452, 623
BspANI GGCC 3 cut(s) 289, 334, 651
BspCNI CTCAG 3 cut(s) 97, 691, 931
BspHI TCATGA 2 cut(s) 439, 1166
BspLI GGNNCC 5 cut(s) 7, 144, 547, 650, 762
BspMI ACCTGC 1 cut(s) 718
BspOI GCTAGC 1 cut(s) 623
BspPI GGATC 6 cut(s) 197, 540, 553, 755, 768, 1090
BspT107I GGYRCC 1 cut(s) 5
BspTI CTTAAG 1 cut(s) 149
BsrDI GCAATG 2 cut(s) 1110, 1140
BsrI ACTGG 2 cut(s) 421, 488
BssECI CCNNGG 5 cut(s) 206, 388, 389, 770, 814
BssMI GATC 7 cut(s) 19, 178, 202, 355, 545, 760, 1082
BssNAI GTATAC 1 cut(s) 426
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 206
Bst1107I GTATAC 1 cut(s) 426
Bst2UI CCWGG 3 cut(s) 345, 390, 885
Bst4CI ACNGT 3 cut(s) 643, 1034, 1150
Bst6I CTCTTC 1 cut(s) 597
BstACI GRCGYC 1 cut(s) 6
BstAFI CTTAAG 1 cut(s) 149
BstC8I GCNNGC 2 cut(s) 621, 977
BstDEI CTNAG 3 cut(s) 84, 678, 939
BstDSI CCRYGG 2 cut(s) 770, 814
BstF5I GGATG 4 cut(s) 290, 481, 688, 1047
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 2 cut(s) 8, 264
BstKTI GATC 7 cut(s) 22, 181, 205, 358, 548, 763, 1085
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 7 cut(s) 19, 178, 202, 355, 545, 760, 1082
BstMWI GCNNNNNNNGC 3 cut(s) 259, 320, 616
BstNI CCWGG 3 cut(s) 345, 390, 885
BstNSI RCATGY 2 cut(s) 614, 1013
BstPAI GACNNNNGTC 1 cut(s) 1035
BstSCI CCNGG 5 cut(s) 28, 343, 388, 471, 883
BstV1I GCAGC 3 cut(s) 106, 109, 1030
BstX2I RGATCY 3 cut(s) 545, 760, 1082
BstYI RGATCY 3 cut(s) 545, 760, 1082
BstZ17I GTATAC 1 cut(s) 426
Bsu36I CCTNAGG 1 cut(s) 678
BsuI GTATCC 1 cut(s) 708
BsuRI GGCC 3 cut(s) 289, 334, 651
BtgI CCRYGG 2 cut(s) 770, 814
BtrI CACGTC 1 cut(s) 273
BtsCI GGATG 4 cut(s) 290, 481, 688, 1047
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 3 cut(s) 595, 639, 1155
BveI ACCTGC 1 cut(s) 718
Cac8I GCNNGC 2 cut(s) 621, 977
CciI TCATGA 2 cut(s) 439, 1166
CfoI GCGC 2 cut(s) 8, 264
Cfr13I GGNCC 4 cut(s) 44, 287, 332, 649
Csp6I GTAC 1 cut(s) 996
CviAII CATG 7 cut(s) 122, 182, 440, 611, 890, 1010, 1167
CviQI GTAC 1 cut(s) 996
DdeI CTNAG 3 cut(s) 84, 678, 939
DinI GGCGCC 1 cut(s) 7
DpnI GATC 7 cut(s) 21, 180, 204, 357, 547, 762, 1084
DpnII GATC 7 cut(s) 19, 178, 202, 355, 545, 760, 1082
DrdI GACNNNNNNGTC 1 cut(s) 740
DseDI GACNNNNNNGTC 1 cut(s) 740
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 239
Eco81I CCTNAGG 1 cut(s) 678
EcoRII CCWGG 3 cut(s) 343, 388, 883
EcoT14I CCWWGG 1 cut(s) 206
EgeI GGCGCC 1 cut(s) 7
EheI GGCGCC 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 7 cut(s) 125, 185, 443, 614, 893, 1013, 1170
FalI AAGNNNNNCTT 2 cut(s) 905, 937
FaqI GGGAC 2 cut(s) 12, 1043
FatI CATG 7 cut(s) 121, 181, 439, 610, 889, 1009, 1166
FbaI TGATCA 2 cut(s) 178, 355
FblI GTMKAC 3 cut(s) 372, 425, 732
Fnu4HI GCNGC 3 cut(s) 95, 98, 1044
FokI GGATG 4 cut(s) 277, 488, 695, 1034
Fsp4HI GCNGC 3 cut(s) 95, 98, 1044
FspBI CTAG 3 cut(s) 417, 464, 620
GlaI GCGC 2 cut(s) 7, 263
GluI GCNGC 3 cut(s) 95, 98, 1044
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 3 cut(s) 289, 334, 651
HapII CCGG 2 cut(s) 30, 473
HhaI GCGC 2 cut(s) 8, 264
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 7 cut(s) 125, 185, 443, 614, 893, 1013, 1170
Hin6I GCGC 2 cut(s) 6, 262
HinP1I GCGC 2 cut(s) 6, 262
HinfI GANTC 4 cut(s) 39, 219, 844, 1153
HpaII CCGG 2 cut(s) 30, 473
HphI GGTGA 3 cut(s) 666, 800, 1135
Hpy166II GTNNAC 3 cut(s) 373, 426, 733
Hpy188I TCNGA 8 cut(s) 38, 44, 59, 87, 258, 545, 760, 940
Hpy188III TCNNGA 9 cut(s) 176, 359, 440, 464, 680, 856, 959, 1051, 1167
Hpy8I GTNNAC 3 cut(s) 373, 426, 733
HpyCH4III ACNGT 3 cut(s) 643, 1034, 1150
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 7 cut(s) 610, 671, 871, 918, 975, 1115, 1145
HpyF10VI GCNNNNNNNGC 3 cut(s) 259, 320, 616
HpyF3I CTNAG 3 cut(s) 84, 678, 939
HpySE526I ACGT 1 cut(s) 272
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 7 cut(s) 125, 185, 443, 614, 893, 1013, 1170
HspAI GCGC 2 cut(s) 6, 262
KasI GGCGCC 1 cut(s) 5
Ksp22I TGATCA 2 cut(s) 178, 355
Kzo9I GATC 7 cut(s) 19, 178, 202, 355, 545, 760, 1082
LmnI GCTCC 3 cut(s) 142, 574, 1006
Lsp1109I GCAGC 3 cut(s) 106, 109, 1030
LweI GCATC 2 cut(s) 249, 680
MaeI CTAG 3 cut(s) 417, 464, 620
MaeII ACGT 1 cut(s) 272
MaeIII GTNAC 4 cut(s) 210, 490, 1136, 1150
MalI GATC 7 cut(s) 21, 180, 204, 357, 547, 762, 1084
MboI GATC 7 cut(s) 19, 178, 202, 355, 545, 760, 1082
MboII GAAGA 4 cut(s) 14, 614, 638, 1141
MflI RGATCY 3 cut(s) 545, 760, 1082
MluCI AATT 7 cut(s) 348, 695, 802, 877, 901, 970, 1020
Mly113I GGCGCC 1 cut(s) 6
MlyI GAGTC 3 cut(s) 213, 838, 1147
MmeI TCCRAC 2 cut(s) 135, 523
MseI TTAA 1 cut(s) 150
MspCI CTTAAG 1 cut(s) 149
MspI CCGG 2 cut(s) 30, 473
MspR9I CCNGG 5 cut(s) 30, 345, 390, 473, 885
Mva1269I GAATGC 1 cut(s) 66
MvaI CCWGG 3 cut(s) 345, 390, 885
MwoI GCNNNNNNNGC 3 cut(s) 259, 320, 616
NarI GGCGCC 1 cut(s) 6
NciI CCSGG 2 cut(s) 30, 473
NdeII GATC 7 cut(s) 19, 178, 202, 355, 545, 760, 1082
NheI GCTAGC 1 cut(s) 619
NlaIII CATG 7 cut(s) 125, 185, 443, 614, 893, 1013, 1170
NlaIV GGNNCC 5 cut(s) 7, 144, 547, 650, 762
NmuCI GTSAC 2 cut(s) 210, 1150
NspI RCATGY 2 cut(s) 614, 1013
PagI TCATGA 2 cut(s) 439, 1166
PasI CCCWGGG 1 cut(s) 389
PctI GAATGC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 39
PfoI TCCNGGA 2 cut(s) 343, 471
PkrI GCNGC 3 cut(s) 96, 99, 1045
PleI GAGTC 3 cut(s) 213, 838, 1147
PluTI GGCGCC 1 cut(s) 9
PpsI GAGTC 3 cut(s) 213, 838, 1147
PshAI GACNNNNGTC 1 cut(s) 1035
Psp6I CCWGG 3 cut(s) 343, 388, 883
PspGI CCWGG 3 cut(s) 343, 388, 883
PspN4I GGNNCC 5 cut(s) 7, 144, 547, 650, 762
PspPI GGNCC 4 cut(s) 44, 287, 332, 649
PsuI RGATCY 3 cut(s) 545, 760, 1082
RsaI GTAC 1 cut(s) 997
RsaNI GTAC 1 cut(s) 996
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 3 cut(s) 95, 98, 1044
Sau3AI GATC 7 cut(s) 19, 178, 202, 355, 545, 760, 1082
Sau96I GGNCC 4 cut(s) 44, 287, 332, 649
SchI GAGTC 3 cut(s) 213, 838, 1147
ScrFI CCNGG 5 cut(s) 30, 345, 390, 473, 885
SfaNI GCATC 2 cut(s) 249, 680
SfoI GGCGCC 1 cut(s) 7
SinI GGWCC 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 149, 1118
SmoI CTYRAG 2 cut(s) 149, 1118
Sse9I AATT 7 cut(s) 348, 695, 802, 877, 901, 970, 1020
SsiI CCGC 3 cut(s) 223, 452, 623
SspDI GGCGCC 1 cut(s) 5
SspI AATATT 2 cut(s) 237, 658
SspMI CTAG 3 cut(s) 417, 464, 620
StyD4I CCNGG 5 cut(s) 28, 343, 388, 471, 883
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 3 cut(s) 643, 1034, 1150
TaiI ACGT 1 cut(s) 275
TaqI TCGA 2 cut(s) 18, 1039
TasI AATT 7 cut(s) 348, 695, 802, 877, 901, 970, 1020
TatI WGTACW 1 cut(s) 995
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 3 cut(s) 595, 646, 1155
TseFI GTSAC 2 cut(s) 210, 1150
TseI GCWGC 3 cut(s) 94, 97, 1043
Tsp45I GTSAC 2 cut(s) 210, 1150
TspDTI ATGAA 5 cut(s) 110, 428, 737, 894, 1142
TspGWI ACGGA 2 cut(s) 787, 1065
TspRI CASTG 3 cut(s) 595, 646, 1155
Vha464I CTTAAG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 2 cut(s) 348, 1020
XbaI TCTAGA 1 cut(s) 463
XceI RCATGY 2 cut(s) 614, 1013
XcmI CCANNNNNNNNNTGG 1 cut(s) 999
XmiI GTMKAC 3 cut(s) 372, 425, 732
XspI CTAG 3 cut(s) 417, 464, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.