FvH4_1g12160

UPF0183 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014288
Physical Location & Seq
Reverse (-)
6642470 .. 6646470
4001 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12160.t2

Sequence Viewer

Length: 1209 bp
ATGATGCAGAGGCCACGTCGACGCTGCGAGGGCACCGCCATGGGCGCCATCGTCCTCGATCTCCGTCCCGGCTTCGGAATCGGACCTTTCTCCCTCGGAATGCCGATATGCGAAGCGTTTGCTCAGATAGAGCAGCAGCCTAATATCTATGATGTTGTTCATGTCAAGTATTACGATGAGGAGCCTCTGAAGTTGGACATTGTCATCAGCTTTCCTGATCATGGTTTCCATCTGCGGTTCGATCCTTGGTCACAGAGGCTCCGCCTTGTTGAAATCTTTGACATAAAACGGCTTCAGATGCGATACGCCACGTCTTTGATCGGGGGGCCATCCACTCTGGCGACCTTTGTAGCTGTATATGCCCTGTTTGGGCCAACATTTCCTGGAATATATGATCAAGATAGAGGTGTCTACAGTCTATTTTACCCAGGGCTTTCTTTTGCTTTTCCAATTCCTAGCCAGTATACAGATTGCGTTCATGATAGAGAAGCGGAACTACCTCTAGAGTTCCCTGATGGAACTACACCAGTTACTTGCCGTGTCTCCATATATGATAGTTCTACCGACAAAAAGGTTGGTGTGGGATCGTTAATGGATAAGGCTTCTGCTCCTCCATTACCTATTGGCAGTGTCTATATGGAAGAGGTGCATGTCAAGCTTGCCGATGAACTACACTTTACTGTTGGGGGCCAGAATATTCCTTTTGGTGCATCGCCTCAGGATATTTGGACTGAGTTGGGTCGTCCTTGTGGGATACATCAAAAGCAGGTAGACCAAATGGTCATTCATTCTGGCTCAGATCCTCGCCCGCGGACAACATTGTGTGGTGATTACTTTTACAATTACTTCACCCGTGGTTTGGACATCTTATTTGATGGGCAGACTCATAAAGTCAAGAAGTTTGTTCTGCATACAAATTATCCTGGTCATGCCGATTTCAATTCGTATATAAAGTGCAACTTTGTCATCTTTGCTTCAGAGTTTGGGGGGTCTTTTCAGGAGATAAATAACTGCAAACACAGGATTACACCTAGCACAAAATGGGAGCATGTGAAGGAAATTCTTGGGGACTGTGGTCGAGCTGCTATCCAGACACAAGGTTCTACAAGCAATCCGTTTGGATCTACTTTTGTATATGGTTATCAAAACATTGCATTTGAGGTGATGAAGAATGGTTACATTGCAACAGTGACGCTCTTTCAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0183

Protein Analysis

403

Amino Acids

45.16

Weight (kDa)

6.0

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHAF1 PF03676 27 - 400 1.1e-140 Phagosome assembly factor 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51130
fragaria_vesca FvH4_1g12160 FvH4_1g12160 FvH4_1g12160
malus_domestica MD02G1111100.v1.1 MD15G1249000.v1.1
prunus_persica Prupe.7G165200_v2.0.a1
pyrus_communis pycom15g21910
rosa_chinensis RchiOBHm_Chr2g0099911
rosa_laevigata RLG00000016921
rosa_roxburghii Rroxscaffold_2G00142740
rosa_rugosa Rorug02G0083900
rosa_samantha Rh2AG132900 Rh2BG136300 Rh2CG138000 Rh2DG138400
rosa_wichuraiana Rw2G010340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
Acc36I ACCTGC 1 cut(s) 757
AccB1I GGYRCC 2 cut(s) 32, 44
AccI GTMKAC 4 cut(s) 19, 411, 464, 771
AccII CGCG 1 cut(s) 811
AciI CCGC 6 cut(s) 36, 235, 262, 491, 809, 811
AclWI GGATC 4 cut(s) 236, 592, 794, 1129
AcsI RAATTY 1 cut(s) 1059
AcuI CTGAAG 3 cut(s) 209, 278, 960
AcyI GRCGYC 1 cut(s) 45
AfiI CCNNNNNNNGG 4 cut(s) 74, 221, 369, 859
AgsI TTSAA 3 cut(s) 272, 940, 1202
AjiI CACGTC 2 cut(s) 17, 312
AjnI CCWGG 3 cut(s) 382, 427, 922
AjuI GAANNNNNNNTTGG 2 cut(s) 768, 800
AluBI AGCT 4 cut(s) 210, 353, 658, 1082
AluI AGCT 4 cut(s) 210, 353, 658, 1082
Alw26I GTCTC 1 cut(s) 547
AlwI GGATC 4 cut(s) 236, 592, 794, 1129
AoxI GGCC 4 cut(s) 11, 326, 371, 688
ApeKI GCWGC 4 cut(s) 24, 133, 136, 1082
ApoI RAATTY 1 cut(s) 1059
ArsI GACNNNNNNTTYG 2 cut(s) 854, 886
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 4 cut(s) 83, 326, 371, 688
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 3 cut(s) 839, 841, 1174
AvaII GGWCC 1 cut(s) 83
AxyI CCTNAGG 1 cut(s) 717
BaeGI GKGCMC 1 cut(s) 35
BanI GGYRCC 2 cut(s) 32, 44
BarI GAAGNNNNNNTAC 4 cut(s) 480, 512, 1160, 1192
BbvI GCAGC 4 cut(s) 11, 145, 148, 1069
BccI CCATC 5 cut(s) 56, 237, 337, 509, 869
BceAI ACGGC 2 cut(s) 305, 522
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 3 cut(s) 384, 429, 924
BciVI GTATCC 1 cut(s) 747
BclI TGATCA 2 cut(s) 217, 394
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 547
BfaI CTAG 3 cut(s) 456, 503, 1032
BfmI CTRYAG 1 cut(s) 412
BfoI RGCGCY 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 757
BfuI GTATCC 1 cut(s) 747
BisI GCNGC 4 cut(s) 25, 134, 137, 1083
BlsI GCNGC 4 cut(s) 26, 135, 138, 1084
Bme1390I CCNGG 4 cut(s) 69, 384, 429, 924
Bme18I GGWCC 1 cut(s) 83
BmgBI CACGTC 2 cut(s) 17, 312
BmgT120I GGNCC 4 cut(s) 83, 326, 371, 688
BmiI GGNNCC 6 cut(s) 34, 46, 183, 260, 327, 689
BmrFI CCNGG 4 cut(s) 69, 384, 429, 924
BmsI GCATC 2 cut(s) 288, 719
BoxI GACNNNNGTC 1 cut(s) 1074
BpuMI CCSGG 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 7 cut(s) 39, 94, 245, 427, 428, 809, 853
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 221, 369, 859
Bse1I ACTGG 2 cut(s) 460, 527
Bse21I CCTNAGG 1 cut(s) 717
Bse3DI GCAATG 2 cut(s) 1149, 1179
BseBI CCWGG 3 cut(s) 384, 429, 924
BseDI CCNNGG 7 cut(s) 39, 94, 245, 427, 428, 809, 853
BseGI GGATG 1 cut(s) 329
BseLI CCNNNNNNNGG 4 cut(s) 74, 221, 369, 859
BseMI GCAATG 2 cut(s) 1149, 1179
BseMII CTCAG 4 cut(s) 137, 723, 731, 810
BseNI ACTGG 2 cut(s) 460, 527
BseRI GAGGAG 2 cut(s) 194, 600
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 4 cut(s) 11, 145, 148, 1069
Bsh1236I CGCG 1 cut(s) 811
BshFI GGCC 4 cut(s) 13, 328, 373, 690
BshNI GGYRCC 2 cut(s) 32, 44
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 2 cut(s) 51, 1082
BslI CCNNNNNNNGG 4 cut(s) 74, 221, 369, 859
BsmAI GTCTC 1 cut(s) 547
BsmFI GGGAC 2 cut(s) 51, 1082
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 4 cut(s) 13, 328, 373, 690
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 8 cut(s) 58, 217, 241, 318, 394, 584, 799, 1121
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 6 cut(s) 36, 235, 262, 491, 809, 811
BspANI GGCC 4 cut(s) 13, 328, 373, 690
BspCNI CTCAG 4 cut(s) 136, 724, 730, 809
BspFNI CGCG 1 cut(s) 811
BspHI TCATGA 2 cut(s) 478, 1205
BspLI GGNNCC 6 cut(s) 34, 46, 183, 260, 327, 689
BspMI ACCTGC 1 cut(s) 757
BspPI GGATC 4 cut(s) 236, 592, 794, 1129
BspT107I GGYRCC 2 cut(s) 32, 44
BsrDI GCAATG 2 cut(s) 1149, 1179
BsrI ACTGG 2 cut(s) 460, 527
BssECI CCNNGG 7 cut(s) 39, 94, 245, 427, 428, 809, 853
BssMI GATC 8 cut(s) 58, 217, 241, 318, 394, 584, 799, 1121
BssNAI GTATAC 1 cut(s) 465
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 2 cut(s) 39, 245
Bst1107I GTATAC 1 cut(s) 465
Bst2UI CCWGG 3 cut(s) 384, 429, 924
Bst4CI ACNGT 4 cut(s) 416, 682, 1073, 1189
Bst6I CTCTTC 1 cut(s) 636
BstACI GRCGYC 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 660, 809
BstDEI CTNAG 4 cut(s) 123, 717, 732, 796
BstDSI CCRYGG 3 cut(s) 39, 809, 853
BstF5I GGATG 1 cut(s) 329
BstFNI CGCG 1 cut(s) 811
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 8 cut(s) 61, 220, 244, 321, 397, 587, 802, 1124
BstMAI GTCTC 1 cut(s) 547
BstMBI GATC 8 cut(s) 58, 217, 241, 318, 394, 584, 799, 1121
BstMWI GCNNNNNNNGC 5 cut(s) 30, 44, 298, 359, 655
BstNI CCWGG 3 cut(s) 384, 429, 924
BstNSI RCATGY 2 cut(s) 653, 1052
BstPAI GACNNNNGTC 1 cut(s) 1074
BstSCI CCNGG 4 cut(s) 67, 382, 427, 922
BstSFI CTRYAG 1 cut(s) 412
BstSLI GKGCMC 1 cut(s) 35
BstUI CGCG 1 cut(s) 811
BstV1I GCAGC 4 cut(s) 11, 145, 148, 1069
BstX2I RGATCY 2 cut(s) 799, 1121
BstYI RGATCY 2 cut(s) 799, 1121
BstZ17I GTATAC 1 cut(s) 465
Bsu36I CCTNAGG 1 cut(s) 717
BsuI GTATCC 1 cut(s) 747
BsuRI GGCC 4 cut(s) 13, 328, 373, 690
BtgI CCRYGG 3 cut(s) 39, 809, 853
BtgZI GCGATG 1 cut(s) 696
BtrI CACGTC 2 cut(s) 17, 312
BtsCI GGATG 1 cut(s) 329
BtsI GCAGTG 1 cut(s) 634
BtsIMutI CAGTG 2 cut(s) 634, 1194
BveI ACCTGC 1 cut(s) 757
Cac8I GCNNGC 2 cut(s) 660, 809
CciI TCATGA 2 cut(s) 478, 1205
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 4 cut(s) 83, 326, 371, 688
Cfr42I CCGCGG 1 cut(s) 812
CseI GACGC 2 cut(s) 30, 1201
CviAII CATG 8 cut(s) 40, 161, 221, 479, 650, 929, 1049, 1206
DdeI CTNAG 4 cut(s) 123, 717, 732, 796
DinI GGCGCC 1 cut(s) 46
DpnI GATC 8 cut(s) 60, 219, 243, 320, 396, 586, 801, 1123
DpnII GATC 8 cut(s) 58, 217, 241, 318, 394, 584, 799, 1121
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
EciI GGCGGA 1 cut(s) 251
Eco130I CCWWGG 2 cut(s) 39, 245
Eco47I GGWCC 1 cut(s) 83
Eco57I CTGAAG 3 cut(s) 209, 278, 960
Eco81I CCTNAGG 1 cut(s) 717
EcoRII CCWGG 3 cut(s) 382, 427, 922
EcoT14I CCWWGG 2 cut(s) 39, 245
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 2 cut(s) 39, 245
FaeI CATG 8 cut(s) 43, 164, 224, 482, 653, 932, 1052, 1209
FalI AAGNNNNNCTT 2 cut(s) 944, 976
FaqI GGGAC 2 cut(s) 51, 1082
FatI CATG 8 cut(s) 39, 160, 220, 478, 649, 928, 1048, 1205
FauI CCCGC 1 cut(s) 816
FbaI TGATCA 2 cut(s) 217, 394
FblI GTMKAC 4 cut(s) 19, 411, 464, 771
Fnu4HI GCNGC 4 cut(s) 25, 134, 137, 1083
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 4 cut(s) 25, 134, 137, 1083
FspBI CTAG 3 cut(s) 456, 503, 1032
GlaI GCGC 1 cut(s) 46
GluI GCNGC 4 cut(s) 25, 134, 137, 1083
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 4 cut(s) 13, 328, 373, 690
HapII CCGG 1 cut(s) 69
HgaI GACGC 2 cut(s) 30, 1201
HhaI GCGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 8 cut(s) 43, 164, 224, 482, 653, 932, 1052, 1209
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 20
HindII GTYRAC 1 cut(s) 20
HindIII AAGCTT 1 cut(s) 656
HinfI GANTC 2 cut(s) 78, 883
HpaII CCGG 1 cut(s) 69
HphI GGTGA 3 cut(s) 839, 841, 1174
Hpy166II GTNNAC 4 cut(s) 20, 412, 465, 772
Hpy188I TCNGA 8 cut(s) 77, 83, 98, 126, 189, 297, 799, 979
Hpy188III TCNNGA 9 cut(s) 215, 398, 479, 503, 719, 895, 998, 1090, 1206
Hpy8I GTNNAC 4 cut(s) 20, 412, 465, 772
Hpy99I CGWCG 2 cut(s) 21, 24
HpyAV CCTTC 1 cut(s) 1048
HpyCH4III ACNGT 4 cut(s) 416, 682, 1073, 1189
HpyCH4IV ACGT 2 cut(s) 16, 311
HpyCH4V TGCA 8 cut(s) 7, 649, 710, 910, 957, 1014, 1154, 1184
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 44, 298, 359, 655
HpyF3I CTNAG 4 cut(s) 123, 717, 732, 796
HpySE526I ACGT 2 cut(s) 16, 311
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 8 cut(s) 43, 164, 224, 482, 653, 932, 1052, 1209
HspAI GCGC 1 cut(s) 45
KasI GGCGCC 1 cut(s) 44
Ksp22I TGATCA 2 cut(s) 217, 394
KspI CCGCGG 1 cut(s) 812
Kzo9I GATC 8 cut(s) 58, 217, 241, 318, 394, 584, 799, 1121
LmnI GCTCC 4 cut(s) 181, 264, 613, 1045
Lsp1109I GCAGC 4 cut(s) 11, 145, 148, 1069
LweI GCATC 2 cut(s) 288, 719
MaeI CTAG 3 cut(s) 456, 503, 1032
MaeII ACGT 2 cut(s) 16, 311
MaeIII GTNAC 4 cut(s) 249, 529, 1175, 1189
MalI GATC 8 cut(s) 60, 219, 243, 320, 396, 586, 801, 1123
MboI GATC 8 cut(s) 58, 217, 241, 318, 394, 584, 799, 1121
MboII GAAGA 2 cut(s) 653, 1180
MflI RGATCY 2 cut(s) 799, 1121
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 5 cut(s) 450, 841, 916, 940, 1059
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 1 cut(s) 877
MmeI TCCRAC 1 cut(s) 174
MseI TTAA 1 cut(s) 590
MslI CAYNNNNRTG 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 811
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 4 cut(s) 69, 384, 429, 924
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 3 cut(s) 384, 429, 924
MvnI CGCG 1 cut(s) 811
MwoI GCNNNNNNNGC 5 cut(s) 30, 44, 298, 359, 655
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 1 cut(s) 69
NcoI CCATGG 1 cut(s) 39
NdeII GATC 8 cut(s) 58, 217, 241, 318, 394, 584, 799, 1121
NlaIII CATG 8 cut(s) 43, 164, 224, 482, 653, 932, 1052, 1209
NlaIV GGNNCC 6 cut(s) 34, 46, 183, 260, 327, 689
NmuCI GTSAC 2 cut(s) 249, 1189
NspI RCATGY 2 cut(s) 653, 1052
PagI TCATGA 2 cut(s) 478, 1205
PasI CCCWGGG 1 cut(s) 428
PctI GAATGC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 78
PflFI GACNNNGTC 1 cut(s) 200
PfoI TCCNGGA 1 cut(s) 382
PkrI GCNGC 4 cut(s) 26, 135, 138, 1084
PleI GAGTC 1 cut(s) 877
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 877
PshAI GACNNNNGTC 1 cut(s) 1074
Psp6I CCWGG 3 cut(s) 382, 427, 922
PspGI CCWGG 3 cut(s) 382, 427, 922
PspN4I GGNNCC 6 cut(s) 34, 46, 183, 260, 327, 689
PspPI GGNCC 4 cut(s) 83, 326, 371, 688
PsuI RGATCY 2 cut(s) 799, 1121
PsyI GACNNNGTC 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 38
SacII CCGCGG 1 cut(s) 812
SalI GTCGAC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 590
SatI GCNGC 4 cut(s) 25, 134, 137, 1083
Sau3AI GATC 8 cut(s) 58, 217, 241, 318, 394, 584, 799, 1121
Sau96I GGNCC 4 cut(s) 83, 326, 371, 688
SchI GAGTC 1 cut(s) 877
ScrFI CCNGG 4 cut(s) 69, 384, 429, 924
SduI GDGCHC 1 cut(s) 35
SfaNI GCATC 2 cut(s) 288, 719
SfcI CTRYAG 1 cut(s) 412
SfoI GGCGCC 1 cut(s) 46
Sfr303I CCGCGG 1 cut(s) 812
SgrBI CCGCGG 1 cut(s) 812
SgrDI CGTCGACG 1 cut(s) 18
SinI GGWCC 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 5 cut(s) 450, 841, 916, 940, 1059
SsiI CCGC 6 cut(s) 36, 235, 262, 491, 809, 811
SspDI GGCGCC 1 cut(s) 44
SspI AATATT 1 cut(s) 697
SspMI CTAG 3 cut(s) 456, 503, 1032
StyD4I CCNGG 4 cut(s) 67, 382, 427, 922
StyI CCWWGG 2 cut(s) 39, 245
TaaI ACNGT 4 cut(s) 416, 682, 1073, 1189
TaiI ACGT 2 cut(s) 19, 314
TaqI TCGA 4 cut(s) 19, 57, 240, 1078
TasI AATT 5 cut(s) 450, 841, 916, 940, 1059
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 1 cut(s) 590
Tru9I TTAA 1 cut(s) 590
TscAI CASTG 2 cut(s) 634, 1194
TseFI GTSAC 2 cut(s) 249, 1189
TseI GCWGC 4 cut(s) 24, 133, 136, 1082
Tsp45I GTSAC 2 cut(s) 249, 1189
TspDTI ATGAA 5 cut(s) 149, 467, 681, 776, 1181
TspGWI ACGGA 2 cut(s) 53, 1104
TspRI CASTG 2 cut(s) 634, 1194
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 83
XapI RAATTY 1 cut(s) 1059
XbaI TCTAGA 1 cut(s) 502
XceI RCATGY 2 cut(s) 653, 1052
XmiI GTMKAC 4 cut(s) 19, 411, 464, 771
XspI CTAG 3 cut(s) 456, 503, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.