Prupe.7G165200_v2.0.a1

UPF0183 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014288
Physical Location & Seq
Forward (+)
16960014 .. 16964744
4731 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G165200.1

Sequence Viewer

Length: 1209 bp
ATGTTGCAGAGACCTCGACGACGCTGCGAGGGCACGGCCATGGGCGCCATCGTGCTCGATCTCCGCCCCGGCCTTGGAATCGGACCCTTCTCTATCGGAATGCCGATATGCGAAGCATTTGCTCAGATAGAGCAGCAGCCTAACATTTATGACGTCGTCCACGTGAAGTATTATGATGAGGAGCCTCTTAAGTTGGATATTGTTATCAGCTTTCCAGATCATGGTTTTCATCTTCGGTTTGATCCTTGGTCACAGAGGCTGCGTCTTGTTGAGATTTTTGATATAAAACGACTTCAAATGCGCTATGCCACTTCCTTGATTGGGGGACCATCCACTCTAGCTACTTTTGTAGCTGTATATGCACTGTTTGGGCCAACCTTTCCTGGAATTTATGACAAGGATAGAGGTGTCTACACTCTATTGTACCCAGGACTTTCCTTTGCTTTTCCAATTCCTAACCAGTATACAGATTGCTGCCATGATGGAGAAGCGGAATTACCATTAGAGTTTCCAGATGGAACCACACCAGTTACGTGCCGTGTCTCCATTTATGACAGTTCTACTGATAAAAAAGTTGGTGTGGGTTCCTTGATGGATAAGGCTTCTGCTCCTCCATTACCAATTGGCAGCCTCTATATGGAAGAGGTGCATGTTAAGCTAGGGGAAGAATTATACTTTAATGTTGGTGGTCAGAATATTCCTTTTGGTGCATCGCCTCAGGATGTTTGGACTGAATTGGGTCGCCCTTGTGGGATACATCAAAAGCAGGTAGACCAAATGGTTATTCATTCTGGATTGGACTCTCGTCCACGGACAACGCTGTGTGGCGATTACTTCTACAATTACTTTACCCGTGGTTTGGACATTTTATTTGATGGGCAGACTCATAAAATCAAGAAGTTTGTTTTGCATACAAACTATCCTGGTCATGCAGATTTCAACTCATACATAAAGTGCAATTTTGTCATCTTTGCTTCTGACTTGGGGGGGTCTTTTCAGGAGGTAAATAACTGCAAACACAGGATTACACCAAGCACGAAGTGGGAGCAAGTGAAGGAAATCCTCGGGGACTGTGGCCGAGCTGCCATCCAGACACAAGGTTCTACAAGCAATCCATTTGGATCTACTTTTGTATATGGTTATCAAAATGTGGCATTTGAGGTGATGAAGAATGGTTACATTGCAACTGTGACTCTTTTCCAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0183

Protein Analysis

403

Amino Acids

45.0

Weight (kDa)

5.89

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51130
fragaria_vesca FvH4_1g12160 FvH4_1g12160 FvH4_1g12160
malus_domestica MD02G1111100.v1.1 MD15G1249000.v1.1
prunus_persica Prupe.7G165200_v2.0.a1
pyrus_communis pycom15g21910
rosa_chinensis RchiOBHm_Chr2g0099911
rosa_laevigata RLG00000016921
rosa_roxburghii Rroxscaffold_2G00142740
rosa_rugosa Rorug02G0083900
rosa_samantha Rh2AG132900 Rh2BG136300 Rh2CG138000 Rh2DG138400
rosa_wichuraiana Rw2G010340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 757
AccB1I GGYRCC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 221
AccI GTMKAC 3 cut(s) 411, 464, 771
AciI CCGC 2 cut(s) 64, 491
AclWI GGATC 2 cut(s) 236, 1129
AcoI YGGCCR 2 cut(s) 36, 1075
AcsI RAATTY 1 cut(s) 387
AcvI CACGTG 1 cut(s) 163
AcyI GRCGYC 2 cut(s) 45, 153
AdeI CACNNNGTG 1 cut(s) 1041
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 5 cut(s) 74, 221, 321, 637, 859
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 296, 940
AjnI CCWGG 3 cut(s) 382, 427, 922
AjuI GAANNNNNNNTTGG 2 cut(s) 768, 800
AluBI AGCT 5 cut(s) 210, 341, 353, 658, 1082
AluI AGCT 5 cut(s) 210, 341, 353, 658, 1082
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 4, 547
AlwI GGATC 2 cut(s) 236, 1129
AlwNI CAGNNNCTG 1 cut(s) 259
Ama87I CYCGRG 1 cut(s) 1064
AoxI GGCC 4 cut(s) 36, 70, 371, 1075
ApeKI GCWGC 7 cut(s) 24, 133, 136, 259, 474, 627, 1082
ApoI RAATTY 1 cut(s) 387
ArsI GACNNNNNNTTYG 2 cut(s) 854, 886
AspLEI GCGC 2 cut(s) 47, 303
AspS9I GGNCC 3 cut(s) 83, 326, 371
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 1174
AvaI CYCGRG 1 cut(s) 1064
AvaII GGWCC 2 cut(s) 83, 326
AxyI CCTNAGG 1 cut(s) 717
BaeGI GKGCMC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 44
BarI GAAGNNNNNNTAC 4 cut(s) 480, 512, 1160, 1192
BbrPI CACGTG 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 7 cut(s) 11, 145, 148, 246, 461, 639, 1069
BccI CCATC 7 cut(s) 56, 337, 476, 509, 586, 869, 1094
BceAI ACGGC 2 cut(s) 51, 522
BcgI CGANNNNNNTGC 5 cut(s) 6, 30, 40, 101, 135
BciT130I CCWGG 3 cut(s) 384, 429, 924
BciVI GTATCC 1 cut(s) 747
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 4, 547
BfaI CTAG 2 cut(s) 338, 659
BfoI RGCGCY 1 cut(s) 48
BfrI CTTAAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 757
BfuI GTATCC 1 cut(s) 747
BisI GCNGC 7 cut(s) 25, 134, 137, 260, 475, 628, 1083
BlsI GCNGC 7 cut(s) 26, 135, 138, 261, 476, 629, 1084
Bme1390I CCNGG 4 cut(s) 69, 384, 429, 924
Bme18I GGWCC 2 cut(s) 83, 326
BmeT110I CYCGRG 1 cut(s) 1064
BmgT120I GGNCC 3 cut(s) 83, 326, 371
BmiI GGNNCC 6 cut(s) 46, 85, 183, 327, 520, 586
BmrFI CCNGG 4 cut(s) 69, 384, 429, 924
BmsI GCATC 1 cut(s) 719
BoxI GACNNNNGTC 1 cut(s) 804
BpuMI CCSGG 1 cut(s) 69
BsaAI YACGTR 2 cut(s) 163, 534
BsaHI GRCGYC 2 cut(s) 45, 153
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 8 cut(s) 39, 67, 73, 245, 427, 809, 853, 1063
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 221, 321, 637, 859
Bse1I ACTGG 3 cut(s) 460, 527, 1201
Bse21I CCTNAGG 1 cut(s) 717
Bse3DI GCAATG 1 cut(s) 1179
BseBI CCWGG 3 cut(s) 384, 429, 924
BseDI CCNNGG 8 cut(s) 39, 67, 73, 245, 427, 809, 853, 1063
BseGI GGATG 3 cut(s) 329, 727, 1086
BseLI CCNNNNNNNGG 5 cut(s) 74, 221, 321, 637, 859
BseMI GCAATG 1 cut(s) 1179
BseMII CTCAG 2 cut(s) 137, 731
BseNI ACTGG 3 cut(s) 460, 527, 1201
BseRI GAGGAG 2 cut(s) 194, 600
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 7 cut(s) 11, 145, 148, 246, 461, 639, 1069
BshFI GGCC 4 cut(s) 38, 72, 373, 1077
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 1064
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 2 cut(s) 339, 1082
BslI CCNNNNNNNGG 5 cut(s) 74, 221, 321, 637, 859
BsmAI GTCTC 2 cut(s) 4, 547
BsmFI GGGAC 2 cut(s) 339, 1082
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 4 cut(s) 38, 72, 373, 1077
Bso31I GGTCTC 1 cut(s) 4
BsoBI CYCGRG 1 cut(s) 1064
Bsp1286I GDGCHC 2 cut(s) 35, 57
Bsp143I GATC 4 cut(s) 58, 217, 241, 1121
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 2 cut(s) 64, 491
BspANI GGCC 4 cut(s) 38, 72, 373, 1077
BspCNI CTCAG 2 cut(s) 136, 730
BspHI TCATGA 1 cut(s) 1205
BspLI GGNNCC 6 cut(s) 46, 85, 183, 327, 520, 586
BspMI ACCTGC 1 cut(s) 757
BspPI GGATC 2 cut(s) 236, 1129
BspT107I GGYRCC 1 cut(s) 44
BspTI CTTAAG 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 1179
BsrI ACTGG 3 cut(s) 460, 527, 1201
BssECI CCNNGG 8 cut(s) 39, 67, 73, 245, 427, 809, 853, 1063
BssMI GATC 4 cut(s) 58, 217, 241, 1121
BssNAI GTATAC 1 cut(s) 465
BssNI GRCGYC 2 cut(s) 45, 153
BssT1I CCWWGG 3 cut(s) 39, 73, 245
Bst1107I GTATAC 1 cut(s) 465
Bst2UI CCWGG 3 cut(s) 384, 429, 924
Bst4CI ACNGT 4 cut(s) 366, 557, 1073, 1189
Bst6I CTCTTC 1 cut(s) 636
BstACI GRCGYC 2 cut(s) 45, 153
BstAFI CTTAAG 1 cut(s) 188
BstBAI YACGTR 2 cut(s) 163, 534
BstDEI CTNAG 2 cut(s) 123, 717
BstDSI CCRYGG 3 cut(s) 39, 809, 853
BstF5I GGATG 3 cut(s) 329, 727, 1086
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 2 cut(s) 47, 303
BstKTI GATC 4 cut(s) 61, 220, 244, 1124
BstMAI GTCTC 2 cut(s) 4, 547
BstMBI GATC 4 cut(s) 58, 217, 241, 1121
BstMWI GCNNNNNNNGC 4 cut(s) 30, 44, 359, 655
BstNI CCWGG 3 cut(s) 384, 429, 924
BstNSI RCATGY 1 cut(s) 653
BstPAI GACNNNNGTC 1 cut(s) 804
BstSCI CCNGG 4 cut(s) 67, 382, 427, 922
BstSLI GKGCMC 1 cut(s) 35
BstV1I GCAGC 7 cut(s) 11, 145, 148, 246, 461, 639, 1069
BstX2I RGATCY 1 cut(s) 1121
BstYI RGATCY 1 cut(s) 1121
BstZ17I GTATAC 1 cut(s) 465
Bsu36I CCTNAGG 1 cut(s) 717
BsuI GTATCC 1 cut(s) 747
BsuRI GGCC 4 cut(s) 38, 72, 373, 1077
BtgI CCRYGG 3 cut(s) 39, 809, 853
BtgZI GCGATG 1 cut(s) 696
BtsCI GGATG 3 cut(s) 329, 727, 1086
BtsIMutI CAGTG 1 cut(s) 362
BveI ACCTGC 1 cut(s) 757
CaiI CAGNNNCTG 1 cut(s) 259
CciI TCATGA 1 cut(s) 1205
CfoI GCGC 2 cut(s) 47, 303
Cfr13I GGNCC 3 cut(s) 83, 326, 371
CseI GACGC 2 cut(s) 30, 251
Csp6I GTAC 1 cut(s) 424
CviAII CATG 6 cut(s) 40, 221, 479, 650, 929, 1206
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 2 cut(s) 123, 717
DinI GGCGCC 1 cut(s) 46
DpnI GATC 4 cut(s) 60, 219, 243, 1123
DpnII GATC 4 cut(s) 58, 217, 241, 1121
DraIII CACNNNGTG 1 cut(s) 1041
EaeI YGGCCR 2 cut(s) 36, 1075
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 3 cut(s) 39, 73, 245
Eco31I GGTCTC 1 cut(s) 4
Eco47I GGWCC 2 cut(s) 83, 326
Eco72I CACGTG 1 cut(s) 163
Eco81I CCTNAGG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 1064
EcoRII CCWGG 3 cut(s) 382, 427, 922
EcoT14I CCWWGG 3 cut(s) 39, 73, 245
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 3 cut(s) 39, 73, 245
FaeI CATG 6 cut(s) 43, 224, 482, 653, 932, 1209
FaqI GGGAC 2 cut(s) 339, 1082
FatI CATG 6 cut(s) 39, 220, 478, 649, 928, 1205
FblI GTMKAC 3 cut(s) 411, 464, 771
Fnu4HI GCNGC 7 cut(s) 25, 134, 137, 260, 475, 628, 1083
FokI GGATG 3 cut(s) 316, 734, 1073
Fsp4HI GCNGC 7 cut(s) 25, 134, 137, 260, 475, 628, 1083
FspBI CTAG 2 cut(s) 338, 659
GlaI GCGC 2 cut(s) 46, 302
GluI GCNGC 7 cut(s) 25, 134, 137, 260, 475, 628, 1083
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 4 cut(s) 38, 72, 373, 1077
HapII CCGG 1 cut(s) 69
HgaI GACGC 2 cut(s) 30, 251
HhaI GCGC 2 cut(s) 47, 303
Hin1I GRCGYC 2 cut(s) 45, 153
Hin1II CATG 6 cut(s) 43, 224, 482, 653, 932, 1209
Hin6I GCGC 2 cut(s) 45, 301
HinP1I GCGC 2 cut(s) 45, 301
HinfI GANTC 4 cut(s) 78, 800, 883, 1192
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 1174
Hpy166II GTNNAC 5 cut(s) 160, 412, 465, 772, 809
Hpy188I TCNGA 5 cut(s) 83, 98, 126, 693, 979
Hpy188III TCNNGA 8 cut(s) 215, 512, 719, 792, 895, 998, 1090, 1206
Hpy8I GTNNAC 5 cut(s) 160, 412, 465, 772, 809
Hpy99I CGWCG 3 cut(s) 21, 24, 158
HpyAV CCTTC 2 cut(s) 97, 1048
HpyCH4III ACNGT 4 cut(s) 366, 557, 1073, 1189
HpyCH4IV ACGT 3 cut(s) 153, 162, 533
HpyCH4V TGCA 9 cut(s) 7, 362, 649, 710, 910, 932, 957, 1014, 1184
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 44, 359, 655
HpyF3I CTNAG 2 cut(s) 123, 717
HpySE526I ACGT 3 cut(s) 153, 162, 533
Hsp92I GRCGYC 2 cut(s) 45, 153
Hsp92II CATG 6 cut(s) 43, 224, 482, 653, 932, 1209
HspAI GCGC 2 cut(s) 45, 301
KasI GGCGCC 1 cut(s) 44
Kzo9I GATC 4 cut(s) 58, 217, 241, 1121
LmnI GCTCC 3 cut(s) 181, 613, 1045
Lsp1109I GCAGC 7 cut(s) 11, 145, 148, 246, 461, 639, 1069
LweI GCATC 1 cut(s) 719
MaeI CTAG 2 cut(s) 338, 659
MaeII ACGT 3 cut(s) 153, 162, 533
MaeIII GTNAC 4 cut(s) 249, 529, 1175, 1189
MalI GATC 4 cut(s) 60, 219, 243, 1123
MboI GATC 4 cut(s) 58, 217, 241, 1121
MboII GAAGA 4 cut(s) 224, 653, 677, 1180
MfeI CAATTG 1 cut(s) 621
MflI RGATCY 1 cut(s) 1121
MhlI GDGCHC 2 cut(s) 35, 57
MluCI AATT 8 cut(s) 387, 450, 494, 621, 668, 734, 841, 958
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 3 cut(s) 794, 877, 1186
MmeI TCCRAC 1 cut(s) 174
MseI TTAA 3 cut(s) 189, 654, 678
MslI CAYNNNNRTG 1 cut(s) 38
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 4 cut(s) 69, 384, 429, 924
MunI CAATTG 1 cut(s) 621
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 3 cut(s) 384, 429, 924
MwoI GCNNNNNNNGC 4 cut(s) 30, 44, 359, 655
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 1 cut(s) 69
NcoI CCATGG 1 cut(s) 39
NdeII GATC 4 cut(s) 58, 217, 241, 1121
NlaIII CATG 6 cut(s) 43, 224, 482, 653, 932, 1209
NlaIV GGNNCC 6 cut(s) 46, 85, 183, 327, 520, 586
NmeAIII GCCGAG 1 cut(s) 1103
NmuCI GTSAC 2 cut(s) 249, 1189
NspI RCATGY 1 cut(s) 653
PagI TCATGA 1 cut(s) 1205
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 78
PflFI GACNNNGTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 382
PkrI GCNGC 7 cut(s) 26, 135, 138, 261, 476, 629, 1084
PleI GAGTC 3 cut(s) 794, 877, 1186
PluTI GGCGCC 1 cut(s) 48
PmaCI CACGTG 1 cut(s) 163
PmlI CACGTG 1 cut(s) 163
PpsI GAGTC 3 cut(s) 794, 877, 1186
Ppu21I YACGTR 2 cut(s) 163, 534
PshAI GACNNNNGTC 1 cut(s) 804
Psp6I CCWGG 3 cut(s) 382, 427, 922
PspCI CACGTG 1 cut(s) 163
PspGI CCWGG 3 cut(s) 382, 427, 922
PspN4I GGNNCC 6 cut(s) 46, 85, 183, 327, 520, 586
PspPI GGNCC 3 cut(s) 83, 326, 371
PstNI CAGNNNCTG 1 cut(s) 259
PsuI RGATCY 1 cut(s) 1121
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 3 cut(s) 189, 654, 678
SatI GCNGC 7 cut(s) 25, 134, 137, 260, 475, 628, 1083
Sau3AI GATC 4 cut(s) 58, 217, 241, 1121
Sau96I GGNCC 3 cut(s) 83, 326, 371
SchI GAGTC 3 cut(s) 794, 877, 1186
ScrFI CCNGG 4 cut(s) 69, 384, 429, 924
SduI GDGCHC 2 cut(s) 35, 57
SfaNI GCATC 1 cut(s) 719
SfoI GGCGCC 1 cut(s) 46
SinI GGWCC 2 cut(s) 83, 326
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 8 cut(s) 387, 450, 494, 621, 668, 734, 841, 958
SsiI CCGC 2 cut(s) 64, 491
SspDI GGCGCC 1 cut(s) 44
SspI AATATT 1 cut(s) 697
SspMI CTAG 2 cut(s) 338, 659
StyD4I CCNGG 4 cut(s) 67, 382, 427, 922
StyI CCWWGG 3 cut(s) 39, 73, 245
TaaI ACNGT 4 cut(s) 366, 557, 1073, 1189
TaiI ACGT 3 cut(s) 156, 165, 536
TaqI TCGA 2 cut(s) 16, 57
TasI AATT 8 cut(s) 387, 450, 494, 621, 668, 734, 841, 958
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 3 cut(s) 189, 654, 678
Tru9I TTAA 3 cut(s) 189, 654, 678
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 2 cut(s) 249, 1189
TseI GCWGC 7 cut(s) 24, 133, 136, 259, 474, 627, 1082
Tsp45I GTSAC 2 cut(s) 249, 1189
TspDTI ATGAA 3 cut(s) 218, 776, 1181
TspGWI ACGGA 1 cut(s) 826
TspRI CASTG 1 cut(s) 369
Tth111I GACNNNGTC 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 221
Vha464I CTTAAG 1 cut(s) 188
VpaK11BI GGWCC 2 cut(s) 83, 326
XapI RAATTY 1 cut(s) 387
XceI RCATGY 1 cut(s) 653
XcmI CCANNNNNNNNNTGG 1 cut(s) 1038
XmiI GTMKAC 3 cut(s) 411, 464, 771
XspI CTAG 2 cut(s) 338, 659
ZraI GACGTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.