AT3G51390

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011245
Physical Location & Seq
Forward (+)
19075544 .. 19078120
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51390.1

Sequence Viewer

Length: 1023 bp
ATGGGCGTTTGTTGCCCTTTCCTTCAACCCTGGGATCGAGCTCGTGATCAATGTCTCCTCAACCTCCCTTGTCTCTCCGATCCTGTTCGAAGATCTTCTCTACTTCTGAAATTGGCACTAGTAGCTCTCCACCTCGTCTTTATCGGCTTTCTCTTCCTTTTCGATGCTGAATTTATTGAGAAAACTAAACGAGATCCATGGTATATGGGCTGTTATATCTTACTGTTTTCTGCAACGCTTCTGCAGTATTTTGTAACTTCTGGCTCTTCACCTGGGTATGTTGTTGATGCAATGAGGGATGTTTGCGAGGCTAGTGCAATGTATAGAAACCCATCTACGACCTCAATACAACATGCTTCCAGAAAAAGTGAGAGCGTTGTTGTTAATGTCGAAGGAGGATCAGCCTCATGTCCCAGAAGGCCTCCAACGCCCTGGGGGAAGTTGGTTCTGGACTTGTACCCTCCAGGGACATCCATTAGAAATTTGACATGCGGCTATTGTCATGTGGAGCAGCCTCCACGAACCAAACATTGTCATGATTGTGATCGATGTGTTCTTCAGTTTGATCATCACTGTGTTTGGTTAGGAACATGTATAGGCCAGAAAAACCATAGTAAATTCTGGTGGTACATCTGTGAAGAGACAACTCTATGCATCTGGACGCTCATCATGTACGTTGACTACCTGAGTAATGTAGCAAAACCTTGGTGGAAGAATGCAATTATCATACTGCTGCTTGTCATATTGGCGATCTCTTTGATTTTTGTGCTGCTTCTATTGATTTTTCACAGCTACCTAATTTTGACAAATCAAAGCACTTATGAACTTGTGAGACGAAGACGTATTCCATACATGAGGAATATTCCGGGACGAGTGCATCCGTTTAGCAGAGGAATTCGGAGGAACCTATACAACGTCTGTTGCGGAAACTATAATCTAGACTCACTTCCCACAGCGTTTGAACTCGAGGATAGATCAAGACCCTACACCTGCATCGATATGTTGAAATGTCGCTGCTGCTAA

Protein Analysis

340

Amino Acids

39.23

Weight (kDa)

8.73

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 161 - 278 5.3e-32 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51390 AT3G51390
fragaria_vesca FvH4_1g10780 FvH4_6g14950
malus_domestica MD02G1121800.v1.1 MD15G1235400.v1.1
prunus_persica Prupe.7G177700_v2.0.a1 Prupe.7G177700_v2.0.a1
pyrus_communis pycom02g09470 pycom15g20960
rosa_chinensis RchiOBHm_Chr2g0097961
rosa_laevigata RLG00000016746
rosa_multiflora Rmu_sc0009572.1_g000004
rosa_roxburghii Rroxscaffold_2G00144420
rosa_rugosa Rorug02G0069300
rosa_samantha Rh2AG116300 Rh2BG119200 Rh2CG120800 Rh2DG120500
rosa_wichuraiana Rw2G009100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 998
Acc36I ACCTGC 1 cut(s) 998
AciI CCGC 2 cut(s) 492, 924
AclWI GGATC 4 cut(s) 42, 74, 188, 406
AcsI RAATTY 4 cut(s) 170, 481, 617, 894
AcuI CTGAAG 1 cut(s) 542
AfaI GTAC 3 cut(s) 458, 629, 674
AflIII ACRYGT 1 cut(s) 590
AgsI TTSAA 3 cut(s) 26, 962, 1006
AhlI ACTAGT 1 cut(s) 118
AjnI CCWGG 4 cut(s) 29, 271, 431, 463
AluBI AGCT 3 cut(s) 41, 125, 792
AluI AGCT 3 cut(s) 41, 125, 792
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 4 cut(s) 59, 77, 635, 826
AlwI GGATC 4 cut(s) 42, 74, 188, 406
Ama87I CYCGRG 1 cut(s) 965
AoxI GGCC 2 cut(s) 419, 598
ApeKI GCWGC 5 cut(s) 511, 733, 769, 1014, 1017
ApoI RAATTY 4 cut(s) 170, 481, 617, 894
Asp700I GAANNNNTTC 1 cut(s) 94
AsuC2I CCSGG 1 cut(s) 867
AsuHPI GGTGA 1 cut(s) 261
AsuII TTCGAA 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 965
BaeI ACNNNNGTAYC 2 cut(s) 619, 652
BanII GRGCYC 1 cut(s) 43
BauI CACGAG 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 844
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 5 cut(s) 523, 720, 756, 1001, 1004
BccI CCATC 1 cut(s) 340
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 4 cut(s) 31, 273, 433, 465
BclI TGATCA 2 cut(s) 46, 565
BcnI CCSGG 1 cut(s) 867
BcoDI GTCTC 4 cut(s) 59, 77, 635, 826
BcuI ACTAGT 1 cut(s) 118
BfaI CTAG 3 cut(s) 119, 312, 938
BfmI CTRYAG 1 cut(s) 242
BfuAI ACCTGC 1 cut(s) 998
BglII AGATCT 1 cut(s) 92
BisI GCNGC 6 cut(s) 493, 512, 734, 770, 1015, 1018
BlsI GCNGC 6 cut(s) 494, 513, 735, 771, 1016, 1019
Bme1390I CCNGG 5 cut(s) 31, 273, 433, 465, 867
BmeT110I CYCGRG 1 cut(s) 965
BmiI GGNNCC 1 cut(s) 905
BmrFI CCNGG 5 cut(s) 31, 273, 433, 465, 867
BmsI GCATC 5 cut(s) 154, 277, 663, 886, 1002
BpiI GAAGAC 1 cut(s) 844
BpmI CTGGAG 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 867
Bsa29I ATCGAT 2 cut(s) 547, 996
BsaBI GATNNNNATC 1 cut(s) 543
BsaJI CCNNGG 8 cut(s) 29, 30, 197, 272, 431, 432, 464, 704
Bse3DI GCAATG 2 cut(s) 297, 324
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 4 cut(s) 31, 273, 433, 465
BseCI ATCGAT 2 cut(s) 547, 996
BseDI CCNNGG 8 cut(s) 29, 30, 197, 272, 431, 432, 464, 704
BseGI GGATG 3 cut(s) 304, 470, 877
BseJI GATNNNNATC 1 cut(s) 543
BseMI GCAATG 2 cut(s) 297, 324
BseMII CTCAG 1 cut(s) 677
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 5 cut(s) 523, 720, 756, 1001, 1004
BshFI GGCC 2 cut(s) 421, 600
BshVI ATCGAT 2 cut(s) 547, 996
BsiHKAI GWGCWC 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 965
BsiSI CCGG 1 cut(s) 866
BslFI GGGAC 3 cut(s) 396, 481, 882
BsmAI GTCTC 4 cut(s) 59, 77, 635, 826
BsmBI CGTCTC 1 cut(s) 826
BsmFI GGGAC 3 cut(s) 396, 481, 882
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 2 cut(s) 421, 600
BsoBI CYCGRG 1 cut(s) 965
Bsp119I TTCGAA 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 43
Bsp19I CCATGG 1 cut(s) 197
BspACI CCGC 2 cut(s) 492, 924
BspANI GGCC 2 cut(s) 421, 600
BspCNI CTCAG 1 cut(s) 678
BspDI ATCGAT 2 cut(s) 547, 996
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 1 cut(s) 905
BspMAI CTGCAG 1 cut(s) 246
BspMI ACCTGC 1 cut(s) 998
BspPI GGATC 4 cut(s) 42, 74, 188, 406
BspQI GCTCTTC 1 cut(s) 271
BspT104I TTCGAA 1 cut(s) 88
BsrDI GCAATG 2 cut(s) 297, 324
BssECI CCNNGG 8 cut(s) 29, 30, 197, 272, 431, 432, 464, 704
BssSI CACGAG 1 cut(s) 42
BssT1I CCWWGG 2 cut(s) 197, 704
Bst2BI CACGAG 1 cut(s) 42
Bst2UI CCWGG 4 cut(s) 31, 273, 433, 465
Bst4CI ACNGT 2 cut(s) 225, 575
Bst6I CTCTTC 3 cut(s) 158, 271, 633
BstBI TTCGAA 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 686
BstDSI CCRYGG 1 cut(s) 197
BstF5I GGATG 3 cut(s) 304, 470, 877
BstMAI GTCTC 4 cut(s) 59, 77, 635, 826
BstMWI GCNNNNNNNGC 3 cut(s) 12, 122, 427
BstNI CCWGG 4 cut(s) 31, 273, 433, 465
BstNSI RCATGY 3 cut(s) 356, 492, 594
BstSCI CCNGG 5 cut(s) 29, 271, 431, 463, 865
BstSFI CTRYAG 1 cut(s) 242
BstV1I GCAGC 5 cut(s) 523, 720, 756, 1001, 1004
BstV2I GAAGAC 1 cut(s) 844
BstX2I RGATCY 2 cut(s) 92, 193
BstXI CCANNNNNNTGG 1 cut(s) 432
BstYI RGATCY 2 cut(s) 92, 193
Bsu15I ATCGAT 2 cut(s) 547, 996
BsuRI GGCC 2 cut(s) 421, 600
BsuTUI ATCGAT 2 cut(s) 547, 996
BtgI CCRYGG 1 cut(s) 197
BtsCI GGATG 3 cut(s) 304, 470, 877
BtsIMutI CAGTG 1 cut(s) 571
BveI ACCTGC 1 cut(s) 998
CciI TCATGA 1 cut(s) 535
ClaI ATCGAT 2 cut(s) 547, 996
CseI GACGC 1 cut(s) 670
Csp6I GTAC 3 cut(s) 457, 628, 673
CspCI CAANNNNNGTGG 2 cut(s) 940, 975
CviAII CATG 9 cut(s) 198, 353, 408, 489, 503, 536, 591, 670, 853
CviQI GTAC 3 cut(s) 457, 628, 673
DdeI CTNAG 1 cut(s) 686
Eam1104I CTCTTC 3 cut(s) 158, 271, 633
EarI CTCTTC 3 cut(s) 158, 271, 633
Ecl136II GAGCTC 1 cut(s) 41
Eco130I CCWWGG 2 cut(s) 197, 704
Eco147I AGGCCT 1 cut(s) 421
Eco24I GRGCYC 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 542
Eco88I CYCGRG 1 cut(s) 965
EcoICRI GAGCTC 1 cut(s) 41
EcoRI GAATTC 1 cut(s) 894
EcoRII CCWGG 4 cut(s) 29, 271, 431, 463
EcoT14I CCWWGG 2 cut(s) 197, 704
EcoT22I ATGCAT 1 cut(s) 656
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 2 cut(s) 197, 704
Esp3I CGTCTC 1 cut(s) 826
FaeI CATG 9 cut(s) 201, 356, 411, 492, 506, 539, 594, 673, 856
FaqI GGGAC 3 cut(s) 396, 481, 882
FatI CATG 9 cut(s) 197, 352, 407, 488, 502, 535, 590, 669, 852
FbaI TGATCA 2 cut(s) 46, 565
Fnu4HI GCNGC 6 cut(s) 493, 512, 734, 770, 1015, 1018
FokI GGATG 3 cut(s) 311, 457, 864
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 6 cut(s) 493, 512, 734, 770, 1015, 1018
FspBI CTAG 3 cut(s) 119, 312, 938
GluI GCNGC 6 cut(s) 493, 512, 734, 770, 1015, 1018
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 2 cut(s) 421, 600
HapII CCGG 1 cut(s) 866
HgaI GACGC 1 cut(s) 670
Hin1II CATG 9 cut(s) 201, 356, 411, 492, 506, 539, 594, 673, 856
HincII GTYRAC 1 cut(s) 679
HindII GTYRAC 1 cut(s) 679
HinfI GANTC 1 cut(s) 941
HpaII CCGG 1 cut(s) 866
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 1 cut(s) 679
Hpy188I TCNGA 3 cut(s) 79, 108, 900
Hpy188III TCNNGA 7 cut(s) 44, 360, 449, 536, 658, 938, 978
Hpy8I GTNNAC 1 cut(s) 679
HpyAV CCTTC 3 cut(s) 32, 386, 411
HpyCH4III ACNGT 2 cut(s) 225, 575
HpyCH4IV ACGT 3 cut(s) 675, 841, 915
HpyCH4V TGCA 8 cut(s) 233, 244, 290, 317, 654, 719, 877, 993
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 122, 427
HpyF3I CTNAG 1 cut(s) 686
HpySE526I ACGT 3 cut(s) 675, 841, 915
Hsp92II CATG 9 cut(s) 201, 356, 411, 492, 506, 539, 594, 673, 856
Ksp22I TGATCA 2 cut(s) 46, 565
LguI GCTCTTC 1 cut(s) 271
LmnI GCTCC 1 cut(s) 508
Lsp1109I GCAGC 5 cut(s) 523, 720, 756, 1001, 1004
LweI GCATC 5 cut(s) 154, 277, 663, 886, 1002
MaeI CTAG 3 cut(s) 119, 312, 938
MaeII ACGT 3 cut(s) 675, 841, 915
MaeIII GTNAC 1 cut(s) 253
MboII GAAGA 8 cut(s) 87, 102, 145, 258, 548, 650, 724, 849
MflI RGATCY 2 cut(s) 92, 193
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 7 cut(s) 110, 170, 481, 617, 720, 798, 894
MlyI GAGTC 1 cut(s) 935
MmeI TCCRAC 1 cut(s) 449
Mph1103I ATGCAT 1 cut(s) 656
MroXI GAANNNNTTC 1 cut(s) 94
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 4 cut(s) 534, 540, 573, 998
MspI CCGG 1 cut(s) 866
MspR9I CCNGG 5 cut(s) 31, 273, 433, 465, 867
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 4 cut(s) 31, 273, 433, 465
MwoI GCNNNNNNNGC 3 cut(s) 12, 122, 427
NciI CCSGG 1 cut(s) 867
NcoI CCATGG 1 cut(s) 197
NlaIII CATG 9 cut(s) 201, 356, 411, 492, 506, 539, 594, 673, 856
NlaIV GGNNCC 1 cut(s) 905
NsiI ATGCAT 1 cut(s) 656
NspI RCATGY 3 cut(s) 356, 492, 594
NspV TTCGAA 1 cut(s) 88
PaeR7I CTCGAG 1 cut(s) 965
PagI TCATGA 1 cut(s) 535
PaqCI CACCTGC 1 cut(s) 998
PasI CCCWGGG 2 cut(s) 30, 432
PceI AGGCCT 1 cut(s) 421
PciI ACATGT 1 cut(s) 590
PciSI GCTCTTC 1 cut(s) 271
PctI GAATGC 1 cut(s) 721
PdmI GAANNNNTTC 1 cut(s) 94
PfoI TCCNGGA 1 cut(s) 865
PkrI GCNGC 6 cut(s) 494, 513, 735, 771, 1016, 1019
PleI GAGTC 1 cut(s) 935
PpsI GAGTC 1 cut(s) 935
PscI ACATGT 1 cut(s) 590
Psp124BI GAGCTC 1 cut(s) 43
Psp6I CCWGG 4 cut(s) 29, 271, 431, 463
PspGI CCWGG 4 cut(s) 29, 271, 431, 463
PspN4I GGNNCC 1 cut(s) 905
PspXI VCTCGAGB 1 cut(s) 965
PstI CTGCAG 1 cut(s) 246
PsuI RGATCY 2 cut(s) 92, 193
RsaI GTAC 3 cut(s) 458, 629, 674
RsaNI GTAC 3 cut(s) 457, 628, 673
RseI CAYNNNNRTG 4 cut(s) 534, 540, 573, 998
SacI GAGCTC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 6 cut(s) 493, 512, 734, 770, 1015, 1018
SchI GAGTC 1 cut(s) 935
ScrFI CCNGG 5 cut(s) 31, 273, 433, 465, 867
SduI GDGCHC 1 cut(s) 43
SfaNI GCATC 5 cut(s) 154, 277, 663, 886, 1002
SfcI CTRYAG 1 cut(s) 242
Sfr274I CTCGAG 1 cut(s) 965
SfuI TTCGAA 1 cut(s) 88
SlaI CTCGAG 1 cut(s) 965
SmiMI CAYNNNNRTG 4 cut(s) 534, 540, 573, 998
SmlI CTYRAG 1 cut(s) 965
SmoI CTYRAG 1 cut(s) 965
SpeI ACTAGT 1 cut(s) 118
Sse9I AATT 7 cut(s) 110, 170, 481, 617, 720, 798, 894
SseBI AGGCCT 1 cut(s) 421
SsiI CCGC 2 cut(s) 492, 924
SspI AATATT 1 cut(s) 862
SspMI CTAG 3 cut(s) 119, 312, 938
SstI GAGCTC 1 cut(s) 43
StuI AGGCCT 1 cut(s) 421
StyD4I CCNGG 5 cut(s) 29, 271, 431, 463, 865
StyI CCWWGG 2 cut(s) 197, 704
TaaI ACNGT 2 cut(s) 225, 575
TaiI ACGT 3 cut(s) 678, 844, 918
TaqI TCGA 7 cut(s) 37, 88, 162, 390, 547, 966, 996
TasI AATT 7 cut(s) 110, 170, 481, 617, 720, 798, 894
TauI GCSGC 1 cut(s) 495
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 1 cut(s) 578
TseI GCWGC 5 cut(s) 511, 733, 769, 1014, 1017
TspDTI ATGAA 1 cut(s) 837
TspGWI ACGGA 1 cut(s) 870
TspRI CASTG 1 cut(s) 578
XapI RAATTY 4 cut(s) 170, 481, 617, 894
XbaI TCTAGA 1 cut(s) 937
XceI RCATGY 3 cut(s) 356, 492, 594
XhoI CTCGAG 1 cut(s) 965
XmnI GAANNNNTTC 1 cut(s) 94
XspI CTAG 3 cut(s) 119, 312, 938
Zsp2I ATGCAT 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.