Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011245

Physical Location & Seq

Genomic Coordinates Reverse (-)

15036234 .. 15040837

Gene Structure 4604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g20960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGACGATCGTGAACATCTGCCGGGACTCGTCGTGTCGACCATTTGAGCGATGCTCCCGTTTCCTTCCCTGCCTCTCCGATCCCGCGCGGAGGTCTGCTTTGGGATTGAAAGTTGCATTGGTGATGCTACATCTGATATACGCCGGCGTGATTTTTCTTTTTGATGGAGGTTTGATAGAGAAAACTAAGAAAGAACCATGGAATACTGCTGTATATTTGACTCTCTTTGTTGTGACACTGATTCAATACTTTGTTACCTCTGGTTCTTCTCCGGGCTTTGTCCTCGATGCAATGAGGACTGTCAATGAATCCAATACAATATTCAGAAAAGCATCAGTAATCTCAAAACAGCCTGCTCCAAGCAAAACTGGCAGCGTGGTTGTGACAGTGGAAGGGAGTCAGTTGGGAAGAAGTCTTCTTGGAAATAATGCAACATCTTGGACCAAACTTGTGATGGACTTGTATCCACCTGGAACATCTGTTAGAAGTTTGACATGCGCGTACTGTAATGTTGAGCAGCCTCCGAGATCAAAGCACTGCCATGATTGTGACAAATGTGTTCTTCAGTTCGATCATCATTGTGTTTGGCTTGGAACATGCATTGGTGTGGGTAACCATTGTAAATTTTGGTGGTACATTTGCGAAGAGACAGCACTGTGCCTTTGGACTGTCATCCTGTACATCACATACCTGAAGGCTAATATATCAGTCGCTTGGTGGAAGGATGCAATTGTGATATTGCTGTTGGTTACTTTGTCAATTTCCATGACCTTTCTGCTGCTCCTCCTGATATTTCATAGTTACCTAGTTCTGACCAATCAGACTACCTATGAGCTTGTAAGACGAAGGCGCATCCCATATTTAAGAGGAGTACCCGAGAGGGTATATCCTTTCAGTAAAGGAGCATGCAGAAATTTATACGAGTTTTGCTGTGTTCGAAGCAGTAAATACAGAATGGAATCATTACCAACAACGCAGCAACTTGAAGAAAAGTCTAGACCTTACACCTGTTGTGACGTTGTAACCTGTCGTTGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009628 GO:0009651 GO:0009705 GO:0016020 GO:0031090 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048731 GO:0048856 GO:0050896 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

347

Amino Acids

39.31

Weight (kDa)

8.96

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51390 AT3G51390
fragaria_vesca	FvH4_1g10780 FvH4_6g14950
malus_domestica	MD02G1121800.v1.1 MD15G1235400.v1.1
prunus_persica	Prupe.7G177700_v2.0.a1 Prupe.7G177700_v2.0.a1
pyrus_communis	pycom02g09470 pycom15g20960
rosa_chinensis	RchiOBHm_Chr2g0097961
rosa_laevigata	RLG00000016746
rosa_multiflora	Rmu_sc0009572.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144420
rosa_rugosa	Rorug02G0069300
rosa_samantha	Rh2AG116300 Rh2BG119200 Rh2CG120800 Rh2DG120500
rosa_wichuraiana	Rw2G009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	37
AccII	CGCG	3 cut(s)	86, 88, 500
AciI	CCGC	2 cut(s)	84, 88
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	2 cut(s)	623, 913
AcuI	CTGAAG	2 cut(s)	548, 713
AfaI	GTAC	4 cut(s)	503, 635, 680, 873
AfiI	CCNNNNNNNGG	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	109, 245, 986
AjnI	CCWGG	1 cut(s)	469
AjuI	GAANNNNNNNTTGG	4 cut(s)	101, 133, 305, 337
AluBI	AGCT	1 cut(s)	835
AluI	AGCT	1 cut(s)	835
Alw26I	GTCTC	1 cut(s)	641
AlwI	GGATC	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	875
ApeKI	GCWGC	4 cut(s)	372, 517, 778, 976
ApoI	RAATTY	2 cut(s)	623, 913
AspLEI	GCGC	3 cut(s)	88, 500, 852
AspS9I	GGNCC	1 cut(s)	441
AsuC2I	CCSGG	2 cut(s)	23, 273
AsuHPI	GGTGA	1 cut(s)	133
AsuII	TTCGAA	1 cut(s)	937
AvaI	CYCGRG	1 cut(s)	875
AvaII	GGWCC	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	407
BbvI	GCAGC	4 cut(s)	384, 529, 765, 988
BccI	CCATC	2 cut(s)	158, 448
BciT130I	CCWGG	1 cut(s)	471
BciVI	GTATCC	1 cut(s)	474
BcnI	CCSGG	2 cut(s)	23, 273
BcoDI	GTCTC	1 cut(s)	641
BfaI	CTAG	2 cut(s)	806, 996
BfuI	GTATCC	1 cut(s)	474
BisI	GCNGC	4 cut(s)	373, 518, 779, 977
BlsI	GCNGC	4 cut(s)	374, 519, 780, 978
Bme1390I	CCNGG	3 cut(s)	23, 273, 471
Bme18I	GGWCC	1 cut(s)	441
BmeT110I	CYCGRG	1 cut(s)	875
BmgT120I	GGNCC	1 cut(s)	441
BmrFI	CCNGG	3 cut(s)	23, 273, 471
BmsI	GCATC	6 cut(s)	41, 114, 277, 341, 715, 861
BpiI	GAAGAC	1 cut(s)	407
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
Bpu14I	TTCGAA	1 cut(s)	937
BpuMI	CCSGG	2 cut(s)	23, 273
BsaJI	CCNNGG	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	3 cut(s)	672, 730, 852
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	2 cut(s)	773, 882
BseXI	GCAGC	4 cut(s)	384, 529, 765, 988
Bsh1236I	CGCG	3 cut(s)	86, 88, 500
Bsh1285I	CGRYCG	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	875
BsiSI	CCGG	3 cut(s)	22, 144, 272
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	641
BsmFI	GGGAC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	875
Bsp119I	TTCGAA	1 cut(s)	937
Bsp1407I	TGTACA	1 cut(s)	678
Bsp143I	GATC	4 cut(s)	6, 79, 527, 571
Bsp19I	CCATGG	1 cut(s)	197
BspACI	CCGC	2 cut(s)	84, 88
BspFNI	CGCG	3 cut(s)	86, 88, 500
BspPI	GGATC	1 cut(s)	74
BspT104I	TTCGAA	1 cut(s)	937
BsrDI	GCAATG	1 cut(s)	297
BsrFI	RCCGGY	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	678
BsrI	ACTGG	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	4 cut(s)	6, 79, 527, 571
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	5 cut(s)	301, 388, 506, 657, 670
Bst6I	CTCTTC	1 cut(s)	639
BstAUI	TGTACA	1 cut(s)	678
BstBI	TTCGAA	1 cut(s)	937
BstC8I	GCNNGC	3 cut(s)	145, 354, 907
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	1 cut(s)	197
BstEII	GGTNACC	1 cut(s)	611
BstF5I	GGATG	3 cut(s)	672, 730, 852
BstFNI	CGCG	3 cut(s)	86, 88, 500
BstHHI	GCGC	3 cut(s)	88, 500, 852
BstKTI	GATC	4 cut(s)	9, 82, 530, 574
BstMAI	GTCTC	1 cut(s)	641
BstMBI	GATC	4 cut(s)	6, 79, 527, 571
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	369
BstNI	CCWGG	1 cut(s)	471
BstNSI	RCATGY	3 cut(s)	498, 600, 909
BstPI	GGTNACC	1 cut(s)	611
BstSCI	CCNGG	3 cut(s)	21, 271, 469
BstUI	CGCG	3 cut(s)	86, 88, 500
BstV1I	GCAGC	4 cut(s)	384, 529, 765, 988
BstV2I	GAAGAC	1 cut(s)	407
BsuI	GTATCC	1 cut(s)	474
BtgI	CCRYGG	1 cut(s)	197
BtgZI	GCGATG	1 cut(s)	64
BtsCI	GGATG	3 cut(s)	672, 730, 852
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	4 cut(s)	236, 393, 535, 653
Cac8I	GCNNGC	3 cut(s)	145, 354, 907
CfoI	GCGC	3 cut(s)	88, 500, 852
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	441
Csp6I	GTAC	4 cut(s)	502, 634, 679, 872
CviAII	CATG	6 cut(s)	198, 495, 542, 597, 766, 906
CviJI	RGCY	6 cut(s)	276, 352, 520, 589, 698, 835
CviKI_1	RGCY	6 cut(s)	276, 352, 520, 589, 698, 835
CviQI	GTAC	4 cut(s)	502, 634, 679, 872
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	4 cut(s)	8, 81, 529, 573
DpnII	GATC	4 cut(s)	6, 79, 527, 571
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Eco130I	CCWWGG	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	441
Eco57I	CTGAAG	2 cut(s)	548, 713
Eco88I	CYCGRG	1 cut(s)	875
Eco91I	GGTNACC	1 cut(s)	611
EcoO65I	GGTNACC	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	197
EcoT22I	ATGCAT	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	6 cut(s)	201, 498, 545, 600, 769, 909
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	6 cut(s)	197, 494, 541, 596, 765, 905
FauI	CCCGC	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	4 cut(s)	373, 518, 779, 977
FokI	GGATG	3 cut(s)	659, 737, 839
Fsp4HI	GCNGC	4 cut(s)	373, 518, 779, 977
FspBI	CTAG	2 cut(s)	806, 996
GlaI	GCGC	3 cut(s)	87, 499, 851
GluI	GCNGC	4 cut(s)	373, 518, 779, 977
HapII	CCGG	3 cut(s)	22, 144, 272
HhaI	GCGC	3 cut(s)	88, 500, 852
Hin1II	CATG	6 cut(s)	201, 498, 545, 600, 769, 909
Hin6I	GCGC	3 cut(s)	86, 498, 850
HinP1I	GCGC	3 cut(s)	86, 498, 850
HincII	GTYRAC	1 cut(s)	38
HindII	GTYRAC	1 cut(s)	38
HinfI	GANTC	6 cut(s)	26, 220, 241, 308, 397, 959
HpaII	CCGG	3 cut(s)	22, 144, 272
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	13, 38
Hpy188I	TCNGA	6 cut(s)	79, 135, 326, 525, 813, 822
Hpy188III	TCNNGA	3 cut(s)	10, 787, 996
Hpy8I	GTNNAC	2 cut(s)	13, 38
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	5 cut(s)	74, 386, 688, 715, 840
HpyCH4III	ACNGT	5 cut(s)	301, 388, 506, 657, 670
HpyCH4IV	ACGT	1 cut(s)	1017
HpyCH4V	TGCA	6 cut(s)	116, 290, 431, 600, 728, 909
HpyF10VI	GCNNNNNNNGC	1 cut(s)	369
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	1017
Hsp92II	CATG	6 cut(s)	201, 498, 545, 600, 769, 909
HspAI	GCGC	3 cut(s)	86, 498, 850
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	6, 79, 527, 571
LmnI	GCTCC	4 cut(s)	59, 361, 786, 902
Lsp1109I	GCAGC	4 cut(s)	384, 529, 765, 988
LweI	GCATC	6 cut(s)	41, 114, 277, 341, 715, 861
MaeI	CTAG	2 cut(s)	806, 996
MaeII	ACGT	1 cut(s)	1017
MaeIII	GTNAC	9 cut(s)	232, 253, 382, 548, 611, 748, 800, 1013, 1021
MalI	GATC	4 cut(s)	8, 81, 529, 573
MboI	GATC	4 cut(s)	6, 79, 527, 571
MboII	GAAGA	6 cut(s)	258, 407, 420, 554, 656, 998
MfeI	CAATTG	1 cut(s)	729
MluCI	AATT	4 cut(s)	623, 729, 759, 913
MlyI	GAGTC	3 cut(s)	20, 214, 406
Mph1103I	ATGCAT	1 cut(s)	602
MreI	CGCCGGCG	1 cut(s)	143
MroNI	GCCGGC	1 cut(s)	143
MseI	TTAA	1 cut(s)	863
MslI	CAYNNNNRTG	4 cut(s)	540, 546, 579, 605
MspI	CCGG	3 cut(s)	22, 144, 272
MspR9I	CCNGG	3 cut(s)	23, 273, 471
MunI	CAATTG	1 cut(s)	729
MvaI	CCWGG	1 cut(s)	471
MvnI	CGCG	3 cut(s)	86, 88, 500
MwoI	GCNNNNNNNGC	1 cut(s)	369
NaeI	GCCGGC	1 cut(s)	145
NciI	CCSGG	2 cut(s)	23, 273
NcoI	CCATGG	1 cut(s)	197
NdeII	GATC	4 cut(s)	6, 79, 527, 571
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	6 cut(s)	201, 498, 545, 600, 769, 909
NmuCI	GTSAC	4 cut(s)	232, 382, 548, 1013
NsiI	ATGCAT	1 cut(s)	602
NspI	RCATGY	3 cut(s)	498, 600, 909
NspV	TTCGAA	1 cut(s)	937
PaeI	GCATGC	1 cut(s)	909
PdiI	GCCGGC	1 cut(s)	145
PfeI	GAWTC	3 cut(s)	241, 308, 959
PkrI	GCNGC	4 cut(s)	374, 519, 780, 978
Ple19I	CGATCG	1 cut(s)	9
PleI	GAGTC	3 cut(s)	20, 214, 405
PpsI	GAGTC	3 cut(s)	20, 214, 405
Psp6I	CCWGG	1 cut(s)	469
PspEI	GGTNACC	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	469
PspPI	GGNCC	1 cut(s)	441
PvuI	CGATCG	1 cut(s)	9
RsaI	GTAC	4 cut(s)	503, 635, 680, 873
RsaNI	GTAC	4 cut(s)	502, 634, 679, 872
RseI	CAYNNNNRTG	4 cut(s)	540, 546, 579, 605
SalI	GTCGAC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	863
SatI	GCNGC	4 cut(s)	373, 518, 779, 977
Sau3AI	GATC	4 cut(s)	6, 79, 527, 571
Sau96I	GGNCC	1 cut(s)	441
SchI	GAGTC	3 cut(s)	20, 214, 406
ScrFI	CCNGG	3 cut(s)	23, 273, 471
SfaNI	GCATC	6 cut(s)	41, 114, 277, 341, 715, 861
SfuI	TTCGAA	1 cut(s)	937
SgrAI	CRCCGGYG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	441
SmiMI	CAYNNNNRTG	4 cut(s)	540, 546, 579, 605
SphI	GCATGC	1 cut(s)	909
Sse9I	AATT	4 cut(s)	623, 729, 759, 913
SsiI	CCGC	2 cut(s)	84, 88
SspI	AATATT	1 cut(s)	321
SspMI	CTAG	2 cut(s)	806, 996
StyD4I	CCNGG	3 cut(s)	21, 271, 469
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	5 cut(s)	301, 388, 506, 657, 670
TaiI	ACGT	1 cut(s)	1020
TaqI	TCGA	4 cut(s)	37, 285, 570, 937
TasI	AATT	4 cut(s)	623, 729, 759, 913
TatI	WGTACW	1 cut(s)	678
TfiI	GAWTC	3 cut(s)	241, 308, 959
Tru1I	TTAA	1 cut(s)	863
Tru9I	TTAA	1 cut(s)	863
TscAI	CASTG	4 cut(s)	243, 393, 542, 660
TseFI	GTSAC	4 cut(s)	232, 382, 548, 1013
TseI	GCWGC	4 cut(s)	372, 517, 778, 976
Tsp45I	GTSAC	4 cut(s)	232, 382, 548, 1013
TspDTI	ATGAA	2 cut(s)	321, 785
TspRI	CASTG	4 cut(s)	243, 393, 542, 660
VpaK11BI	GGWCC	1 cut(s)	441
XapI	RAATTY	2 cut(s)	623, 913
XbaI	TCTAGA	1 cut(s)	995
XceI	RCATGY	3 cut(s)	498, 600, 909
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	2 cut(s)	806, 996
Zsp2I	ATGCAT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.