Rorug02G0069300

Belongs to the DHHC palmitoyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
5394390 .. 5395292
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0069300.1

Sequence Viewer

Length: 447 bp
ATGTTCGATGAAAAGAAACCCAAAGAGGTAATTGGTCGAAGTATTCATAAGATTCTTGAATGTGTAGGTGAGGCCAAAACTCTATGTGTACCTGAAAGGTTGCTTGAGATTCTTGACGATAATAAGAAGCTGCAACTTGTTGGTGTACAGGACTTGTTTGTAGATGCCAGAATTGCAAATTCCCAAACAATGGCCTCATACCTTGGAAGATTTCCCAATTTACAATTTCTTTCAATTAGATCGTTTTTGGAGAAAAGTCTTATTGATATAGAATTCAGAAGGTTGGAGGAGAACTCTAGATACTCAGAAAAGTACTTGAAATCCCAAGAGCTGGATTTTTTTCATCAAATAAAGACTTTGCACATAGGTCTTCATAAACGAGATCGATATGATGAAATTGGGATCATTCGTCAAATATTTACTCAAGTGTGCAGCAGTATTAGATGA

Protein Analysis

148

Amino Acids

17.43

Weight (kDa)

8.43

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011245)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 190, 331
AclWI GGATC 1 cut(s) 410
AcsI RAATTY 2 cut(s) 178, 272
AfaI GTAC 3 cut(s) 90, 147, 314
AfiI CCNNNNNNNGG 2 cut(s) 190, 331
AgsI TTSAA 3 cut(s) 59, 234, 319
AluBI AGCT 2 cut(s) 130, 331
AluI AGCT 2 cut(s) 130, 331
AlwI GGATC 1 cut(s) 410
AoxI GGCC 2 cut(s) 72, 192
ApeKI GCWGC 2 cut(s) 130, 432
ApoI RAATTY 2 cut(s) 178, 272
AsuHPI GGTGA 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 117
BfaI CTAG 1 cut(s) 297
BisI GCNGC 2 cut(s) 131, 433
BlsI GCNGC 2 cut(s) 132, 434
BmcAI AGTACT 1 cut(s) 314
BmsI GCATC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 362
BplI GAGNNNNNCTC 2 cut(s) 278, 310
BpuEI CTTGAG 2 cut(s) 125, 408
Bsa29I ATCGAT 1 cut(s) 385
BsaJI CCNNGG 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 331
BseCI ATCGAT 1 cut(s) 385
BseDI CCNNGG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 190, 331
BseMII CTCAG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 117
BshFI GGCC 2 cut(s) 74, 194
BshVI ATCGAT 1 cut(s) 385
BslI CCNNNNNNNGG 2 cut(s) 190, 331
BsnI GGCC 2 cut(s) 74, 194
Bsp1407I TGTACA 1 cut(s) 145
Bsp143I GATC 3 cut(s) 239, 382, 402
BspANI GGCC 2 cut(s) 74, 194
BspCNI CTCAG 1 cut(s) 317
BspDI ATCGAT 1 cut(s) 385
BspPI GGATC 1 cut(s) 410
BsrGI TGTACA 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 3 cut(s) 239, 382, 402
BssT1I CCWWGG 1 cut(s) 202
BstAUI TGTACA 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 304
BstKTI GATC 3 cut(s) 242, 385, 405
BstMBI GATC 3 cut(s) 239, 382, 402
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 117
BstV2I GAAGAC 1 cut(s) 362
Bsu15I ATCGAT 1 cut(s) 385
BsuRI GGCC 2 cut(s) 74, 194
BsuTUI ATCGAT 1 cut(s) 385
ClaI ATCGAT 1 cut(s) 385
Csp6I GTAC 3 cut(s) 89, 146, 313
CviJI RGCY 4 cut(s) 74, 130, 194, 331
CviKI_1 RGCY 4 cut(s) 74, 130, 194, 331
CviQI GTAC 3 cut(s) 89, 146, 313
DdeI CTNAG 1 cut(s) 304
DpnI GATC 3 cut(s) 241, 384, 404
DpnII GATC 3 cut(s) 239, 382, 402
Eco130I CCWWGG 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
FaiI YATR 7 cut(s) 48, 85, 199, 269, 365, 375, 390
Fnu4HI GCNGC 2 cut(s) 131, 433
Fsp4HI GCNGC 2 cut(s) 131, 433
FspBI CTAG 1 cut(s) 297
GluI GCNGC 2 cut(s) 131, 433
HaeIII GGCC 2 cut(s) 74, 194
HinfI GANTC 2 cut(s) 52, 109
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 2 cut(s) 89, 146
Hpy188I TCNGA 2 cut(s) 278, 307
Hpy188III TCNNGA 3 cut(s) 56, 113, 297
Hpy8I GTNNAC 2 cut(s) 89, 146
HpyAV CCTTC 1 cut(s) 273
HpyCH4V TGCA 4 cut(s) 133, 176, 361, 432
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 1 cut(s) 304
Kzo9I GATC 3 cut(s) 239, 382, 402
LpnPI CCDG 4 cut(s) 105, 134, 181, 317
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 297
MalI GATC 3 cut(s) 241, 384, 404
MboI GATC 3 cut(s) 239, 382, 402
MboII GAAGA 2 cut(s) 219, 362
MluCI AATT 8 cut(s) 30, 171, 178, 217, 224, 234, 272, 396
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 4 cut(s) 19, 64, 205, 280
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeII GATC 3 cut(s) 239, 382, 402
PfeI GAWTC 2 cut(s) 52, 109
PflMI CCANNNNNTGG 2 cut(s) 190, 331
PkrI GCNGC 2 cut(s) 132, 434
PsrI GAACNNNNNNTAC 2 cut(s) 284, 316
RsaI GTAC 3 cut(s) 90, 147, 314
RsaNI GTAC 3 cut(s) 89, 146, 313
SatI GCNGC 2 cut(s) 131, 433
Sau3AI GATC 3 cut(s) 239, 382, 402
ScaI AGTACT 1 cut(s) 314
SetI ASST 9 cut(s) 30, 70, 94, 101, 132, 204, 284, 333, 370
SfaNI GCATC 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 104, 423
SmoI CTYRAG 2 cut(s) 104, 423
Sse9I AATT 8 cut(s) 30, 171, 178, 217, 224, 234, 272, 396
SspI AATATT 1 cut(s) 417
SspMI CTAG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 202
TaqI TCGA 3 cut(s) 6, 37, 385
TasI AATT 8 cut(s) 30, 171, 178, 217, 224, 234, 272, 396
TatI WGTACW 2 cut(s) 145, 312
TfiI GAWTC 2 cut(s) 52, 109
TseI GCWGC 2 cut(s) 130, 432
TspDTI ATGAA 5 cut(s) 24, 35, 332, 362, 408
Van91I CCANNNNNTGG 2 cut(s) 190, 331
XapI RAATTY 2 cut(s) 178, 272
XbaI TCTAGA 1 cut(s) 296
XspI CTAG 1 cut(s) 297
ZrmI AGTACT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.