Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011245

Physical Location & Seq

Genomic Coordinates Reverse (-)

9665683 .. 9670427

Gene Structure 4745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGACGATCATAAACGTTTGCCGCAGTCTCCGAGACTCGTCATGCGGAGCATTCCAACGGTACTGCCGGTGTCTTCCTTGCCTCTCCGATCCCGCTCGGAGGTCTGCTTTGGGTTTAAAAGTTGCACTGGTGATGCTGCATCTGATATATGCTGGTGTTCTTTTTCTGTTTGATGGAGGTTTGATAGAGAAAACTAAAAGAGAACCATGGTATACAGGAACATATTTGGCTCTTTTTGTCATTACATTGGTTCAATACTTCGTTACTTCCAGTTCTTCTCCTGGCTATGTCATTGATGCAATGAGGACAGTGAATGAGGCGAATTCAATATTTAGAAAGACAGCTACAGTATCGCAACAGCCTGCTTCAAGCAAAGGAAGCGTGGTTGTGACAGTGGAAGGCAGTCAGTTGGGAAGACCTCTTCTTAAAGATAGTGGAACACCTTGGAGCAAACTTGTGTTGGATTTGTATCCTCCCGGACCATCTGTTAGAAGTTTGACTTGCTCCTACTGTAATGTTGAGCAGCCTCCGAGATCAAAGCATTGTCATGATTGTGACAGATGTGTTCTTCAGTTTGATCACCATTGTGTTTGGCTTGGAACATGCATTGGTGTGGGTAATCATTGTAAATTTTGGTGGTACATTTGTGAAGAGACTGCATTGTGCCTCTGGACTGGCGTCCAGTATATCACATACCTCAAGAGTAATATATTAAGCGCTTGGTGGAAGGATGCAATCATGATTGTGCTGTTGGTTACCTTATCGATTTCCCTGATCTTTCTCCTCCTCTTGCTACTTTTTCACAGCTATCTTATTCTGACCAATCAAACTACCTATGAGCTTGTAAGACGTAGACGGATCACATATTTAAGGGGAATACCTGAAAGAGTTTATCCTTTCAGTAAAGGAGCATGCAGAAATTTATACGAGTTTTGCTGTCTTCCAAGCAGAAAATACAGATTGGAATCATTACCAACAGCTCTGGAACTTGAAGAAAAATCAAGACCTTACACATGTACGGATGTTGTAACATGTCGTTGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009628 GO:0009651 GO:0009705 GO:0016020 GO:0031090 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048731 GO:0048856 GO:0050896 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

349

Amino Acids

39.56

Weight (kDa)

8.89

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	166 - 283	5.1e-31	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51390 AT3G51390
fragaria_vesca	FvH4_1g10780 FvH4_6g14950
malus_domestica	MD02G1121800.v1.1 MD15G1235400.v1.1
prunus_persica	Prupe.7G177700_v2.0.a1 Prupe.7G177700_v2.0.a1
pyrus_communis	pycom02g09470 pycom15g20960
rosa_chinensis	RchiOBHm_Chr2g0097961
rosa_laevigata	RLG00000016746
rosa_multiflora	Rmu_sc0009572.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144420
rosa_rugosa	Rorug02G0069300
rosa_samantha	Rh2AG116300 Rh2BG119200 Rh2CG120800 Rh2DG120500
rosa_wichuraiana	Rw2G009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	95
AccI	GTMKAC	2 cut(s)	212, 853
AciI	CCGC	3 cut(s)	22, 45, 93
AclI	AACGTT	1 cut(s)	15
AclWI	GGATC	2 cut(s)	83, 866
AcsI	RAATTY	3 cut(s)	322, 629, 919
AcuI	CTGAAG	1 cut(s)	554
AcyI	GRCGYC	1 cut(s)	678
AfaI	GTAC	3 cut(s)	62, 641, 1018
AfeI	AGCGCT	1 cut(s)	718
AfiI	CCNNNNNNNGG	1 cut(s)	99
AflIII	ACRYGT	2 cut(s)	1013, 1031
AgsI	TTSAA	4 cut(s)	254, 327, 369, 992
AjnI	CCWGG	1 cut(s)	280
AleI	CACNNNNGTG	1 cut(s)	585
AluBI	AGCT	4 cut(s)	344, 807, 841, 980
AluI	AGCT	4 cut(s)	344, 807, 841, 980
Alw26I	GTCTC	3 cut(s)	27, 32, 647
AlwI	GGATC	2 cut(s)	83, 866
Aor51HI	AGCGCT	1 cut(s)	718
ApeKI	GCWGC	2 cut(s)	136, 523
ApoI	RAATTY	3 cut(s)	322, 629, 919
AspLEI	GCGC	1 cut(s)	719
AspS9I	GGNCC	1 cut(s)	479
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	2 cut(s)	142, 572
AvaII	GGWCC	1 cut(s)	479
BaeI	ACNNNNGTAYC	2 cut(s)	631, 664
BbsI	GAAGAC	3 cut(s)	65, 421, 932
BbvI	GCAGC	2 cut(s)	123, 535
BccI	CCATC	2 cut(s)	167, 490
BciT130I	CCWGG	1 cut(s)	282
BciVI	GTATCC	1 cut(s)	480
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	1 cut(s)	477
BcoDI	GTCTC	3 cut(s)	27, 32, 647
BfmI	CTRYAG	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	720
BfuI	GTATCC	1 cut(s)	480
BisI	GCNGC	3 cut(s)	22, 137, 524
BlsI	GCNGC	3 cut(s)	23, 138, 525
Bme1390I	CCNGG	2 cut(s)	282, 477
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmrFI	CCNGG	2 cut(s)	282, 477
BmsI	GCATC	4 cut(s)	123, 148, 286, 721
BoxI	GACNNNNGTC	1 cut(s)	677
BpiI	GAAGAC	3 cut(s)	65, 421, 932
BpuEI	CTTGAG	1 cut(s)	683
BpuMI	CCSGG	1 cut(s)	477
Bsa29I	ATCGAT	1 cut(s)	764
BsaBI	GATNNNNATC	2 cut(s)	468, 964
BsaHI	GRCGYC	1 cut(s)	678
BsaJI	CCNNGG	2 cut(s)	206, 443
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	4 cut(s)	132, 270, 679, 682
Bse3DI	GCAATG	1 cut(s)	306
Bse8I	GATNNNNATC	2 cut(s)	468, 964
BseBI	CCWGG	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	764
BseDI	CCNNGG	2 cut(s)	206, 443
BseGI	GGATG	2 cut(s)	736, 1027
BseJI	GATNNNNATC	2 cut(s)	468, 964
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	306
BseNI	ACTGG	4 cut(s)	132, 270, 679, 682
BseRI	GAGGAG	2 cut(s)	773, 776
BseXI	GCAGC	2 cut(s)	123, 535
BshVI	ATCGAT	1 cut(s)	764
BsiSI	CCGG	2 cut(s)	67, 477
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmAI	GTCTC	3 cut(s)	27, 32, 647
BsmI	GAATGC	1 cut(s)	50
Bsp143I	GATC	6 cut(s)	6, 88, 533, 577, 774, 858
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	3 cut(s)	22, 45, 93
BspDI	ATCGAT	1 cut(s)	764
BspHI	TCATGA	2 cut(s)	547, 738
BspPI	GGATC	2 cut(s)	83, 866
BsrBI	CCGCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	4 cut(s)	132, 270, 679, 682
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	206, 443
BssMI	GATC	6 cut(s)	6, 88, 533, 577, 774, 858
BssNAI	GTATAC	1 cut(s)	213
BssNI	GRCGYC	1 cut(s)	678
BssT1I	CCWWGG	2 cut(s)	206, 443
Bst1107I	GTATAC	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	5 cut(s)	60, 310, 349, 394, 512
Bst6I	CTCTTC	2 cut(s)	426, 645
BstACI	GRCGYC	1 cut(s)	678
BstC8I	GCNNGC	2 cut(s)	363, 913
BstDSI	CCRYGG	1 cut(s)	206
BstEII	GGTNACC	1 cut(s)	754
BstF5I	GGATG	2 cut(s)	736, 1027
BstH2I	RGCGCY	1 cut(s)	720
BstHHI	GCGC	1 cut(s)	719
BstKTI	GATC	6 cut(s)	9, 91, 536, 580, 777, 861
BstMAI	GTCTC	3 cut(s)	27, 32, 647
BstMBI	GATC	6 cut(s)	6, 88, 533, 577, 774, 858
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	4 cut(s)	606, 915, 1017, 1035
BstPAI	GACNNNNGTC	1 cut(s)	677
BstPI	GGTNACC	1 cut(s)	754
BstSCI	CCNGG	2 cut(s)	280, 475
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	123, 535
BstV2I	GAAGAC	3 cut(s)	65, 421, 932
BstZ17I	GTATAC	1 cut(s)	213
Bsu15I	ATCGAT	1 cut(s)	764
BsuI	GTATCC	1 cut(s)	480
BsuTUI	ATCGAT	1 cut(s)	764
BtgI	CCRYGG	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	736, 1027
BtsIMutI	CAGTG	3 cut(s)	125, 315, 399
Cac8I	GCNNGC	2 cut(s)	363, 913
CciI	TCATGA	2 cut(s)	547, 738
CfoI	GCGC	1 cut(s)	719
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	479
ClaI	ATCGAT	1 cut(s)	764
CseI	GACGC	1 cut(s)	667
Csp6I	GTAC	3 cut(s)	61, 640, 1017
CviAII	CATG	8 cut(s)	42, 207, 548, 603, 739, 912, 1014, 1032
CviJI	RGCY	9 cut(s)	230, 285, 344, 361, 526, 595, 807, 841, 980
CviKI_1	RGCY	9 cut(s)	230, 285, 344, 361, 526, 595, 807, 841, 980
CviQI	GTAC	3 cut(s)	61, 640, 1017
DpnI	GATC	6 cut(s)	8, 90, 535, 579, 776, 860
DpnII	GATC	6 cut(s)	6, 88, 533, 577, 774, 858
DraI	TTTAAA	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	426, 645
EarI	CTCTTC	2 cut(s)	426, 645
Eco130I	CCWWGG	2 cut(s)	206, 443
Eco47I	GGWCC	1 cut(s)	479
Eco47III	AGCGCT	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	554
Eco91I	GGTNACC	1 cut(s)	754
EcoO65I	GGTNACC	1 cut(s)	754
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	2 cut(s)	206, 443
EcoT22I	ATGCAT	1 cut(s)	608
ErhI	CCWWGG	2 cut(s)	206, 443
FaeI	CATG	8 cut(s)	45, 210, 551, 606, 742, 915, 1017, 1035
FalI	AAGNNNNNCTT	2 cut(s)	484, 516
FatI	CATG	8 cut(s)	41, 206, 547, 602, 738, 911, 1013, 1031
FauI	CCCGC	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	577
FblI	GTMKAC	2 cut(s)	212, 853
Fnu4HI	GCNGC	3 cut(s)	22, 137, 524
FokI	GGATG	2 cut(s)	743, 1034
Fsp4HI	GCNGC	3 cut(s)	22, 137, 524
GlaI	GCGC	1 cut(s)	718
GluI	GCNGC	3 cut(s)	22, 137, 524
HaeII	RGCGCY	1 cut(s)	720
HapII	CCGG	2 cut(s)	67, 477
HgaI	GACGC	1 cut(s)	667
HhaI	GCGC	1 cut(s)	719
Hin1I	GRCGYC	1 cut(s)	678
Hin1II	CATG	8 cut(s)	45, 210, 551, 606, 742, 915, 1017, 1035
Hin6I	GCGC	1 cut(s)	717
HinP1I	GCGC	1 cut(s)	717
HinfI	GANTC	2 cut(s)	35, 965
HpaII	CCGG	2 cut(s)	67, 477
HphI	GGTGA	2 cut(s)	142, 572
Hpy166II	GTNNAC	2 cut(s)	213, 854
Hpy188I	TCNGA	6 cut(s)	32, 88, 99, 144, 531, 819
Hpy188III	TCNNGA	6 cut(s)	548, 670, 700, 739, 983, 1002
Hpy8I	GTNNAC	2 cut(s)	213, 854
HpyAV	CCTTC	2 cut(s)	392, 721
HpyCH4III	ACNGT	5 cut(s)	60, 310, 349, 394, 512
HpyCH4IV	ACGT	2 cut(s)	15, 850
HpyCH4V	TGCA	7 cut(s)	125, 139, 299, 606, 659, 734, 915
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpySE526I	ACGT	2 cut(s)	15, 850
Hsp92I	GRCGYC	1 cut(s)	678
Hsp92II	CATG	8 cut(s)	45, 210, 551, 606, 742, 915, 1017, 1035
HspAI	GCGC	1 cut(s)	717
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	6 cut(s)	6, 88, 533, 577, 774, 858
LmnI	GCTCC	4 cut(s)	47, 447, 509, 908
Lsp1109I	GCAGC	2 cut(s)	123, 535
LweI	GCATC	4 cut(s)	123, 148, 286, 721
MaeII	ACGT	2 cut(s)	15, 850
MaeIII	GTNAC	5 cut(s)	262, 388, 554, 754, 1027
MalI	GATC	6 cut(s)	8, 90, 535, 579, 776, 860
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	6 cut(s)	6, 88, 533, 577, 774, 858
MboII	GAAGA	8 cut(s)	65, 267, 413, 426, 560, 662, 932, 1004
MluCI	AATT	3 cut(s)	322, 629, 919
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	2 cut(s)	79, 441
Mph1103I	ATGCAT	1 cut(s)	608
MseI	TTAA	4 cut(s)	116, 426, 713, 869
MslI	CAYNNNNRTG	5 cut(s)	546, 552, 585, 611, 743
MspI	CCGG	2 cut(s)	67, 477
MspR9I	CCNGG	2 cut(s)	282, 477
Mva1269I	GAATGC	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	378
NciI	CCSGG	1 cut(s)	477
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	6 cut(s)	6, 88, 533, 577, 774, 858
NlaIII	CATG	8 cut(s)	45, 210, 551, 606, 742, 915, 1017, 1035
NmuCI	GTSAC	2 cut(s)	388, 554
NsiI	ATGCAT	1 cut(s)	608
NspI	RCATGY	4 cut(s)	606, 915, 1017, 1035
OliI	CACNNNNGTG	1 cut(s)	585
PaeI	GCATGC	1 cut(s)	915
PagI	TCATGA	2 cut(s)	547, 738
PciI	ACATGT	2 cut(s)	1013, 1031
PctI	GAATGC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	965
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	3 cut(s)	23, 138, 525
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PscI	ACATGT	2 cut(s)	1013, 1031
PshAI	GACNNNNGTC	1 cut(s)	677
Psp1406I	AACGTT	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	280
PspEI	GGTNACC	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	479
RsaI	GTAC	3 cut(s)	62, 641, 1018
RsaNI	GTAC	3 cut(s)	61, 640, 1017
RseI	CAYNNNNRTG	5 cut(s)	546, 552, 585, 611, 743
SaqAI	TTAA	4 cut(s)	116, 426, 713, 869
SatI	GCNGC	3 cut(s)	22, 137, 524
Sau3AI	GATC	6 cut(s)	6, 88, 533, 577, 774, 858
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	282, 477
SfaNI	GCATC	4 cut(s)	123, 148, 286, 721
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	5 cut(s)	546, 552, 585, 611, 743
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
SphI	GCATGC	1 cut(s)	915
Sse9I	AATT	3 cut(s)	322, 629, 919
SsiI	CCGC	3 cut(s)	22, 45, 93
SspI	AATATT	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	280, 475
StyI	CCWWGG	2 cut(s)	206, 443
TaaI	ACNGT	5 cut(s)	60, 310, 349, 394, 512
TaiI	ACGT	2 cut(s)	18, 853
TaqI	TCGA	1 cut(s)	764
TasI	AATT	3 cut(s)	322, 629, 919
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	965
Tru1I	TTAA	4 cut(s)	116, 426, 713, 869
Tru9I	TTAA	4 cut(s)	116, 426, 713, 869
TscAI	CASTG	3 cut(s)	132, 315, 399
TseFI	GTSAC	2 cut(s)	388, 554
TseI	GCWGC	2 cut(s)	136, 523
Tsp45I	GTSAC	2 cut(s)	388, 554
TspGWI	ACGGA	2 cut(s)	871, 1034
TspRI	CASTG	3 cut(s)	132, 315, 399
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	3 cut(s)	322, 629, 919
XceI	RCATGY	4 cut(s)	606, 915, 1017, 1035
XmiI	GTMKAC	2 cut(s)	212, 853
Zsp2I	ATGCAT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.