Rh2BG119200

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011245
Physical Location & Seq
Reverse (-)
10119896 .. 10124627
4732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG119200.1

Sequence Viewer

Length: 1047 bp
ATGACGATCTTAAACGTTTGCCGGTCTCTCCGAGACTCGTCAGGTGGAGCAGTCCACCGGTACTGCCGGTGTCTTCCTTGCCTCTCCGATCCCGCTCGGAGGTCTGCTTTGGGTTTAAAAGTTGCATTGGTGATGCTGCATCTGATATATGCTGGTGTTCTTTTTCTGTTTGATGGAGGTTTGATAGAGAAGACTAAAAGAGAACCATGGTATACAGGAGCATATTTGGCTCTTTTTGTCATTACATTGGTTCAATACTTCGTTACTTCCGGCTCTTCTCCTGGCTATGTCATTGATGCAATGAGGACAGTGAATGAGGCGAATTCAATATTTAGAAAGATAGCAACAGTATCAAAACAGCCTGCTTCAAGCAAAGGAAGCGTGGTTGTGACAGTGGAAGGCAGTCAGTTGGGAAGACCTCTTCTTAAAGATAGTGGAACACCTTGGAGCAAACTTGTGTTGGACTTGTATCCTCCCGGAACATCTGTTAGAAGTTTGACTTGCTCCTACTGTAATGTTGAGCAGCCTCCGAGATCAAAGCATTGTCATGATTGTGACAGATGTGTTCTTCAGTTTGATCACCATTGTGTTTGGCTTGGAACATGCATTGGTGTGGGTAATCATTGTAAATTTTGGTGGTACATTTGTGAAGAGACTGCATTGTGCCTCTGGACTGGCATCCAGTATATCACATACCTGAAGAGTAATATATTAAGCGCTTGGTGGAAGGATGCAATCATGATTGTGCTGTTGGTTACCTTATCGATTTCCCTGATCTTTCTCCTCCTCTTGTTACTTTTTCACAGCTATCTTATTCTGACCAATCAAACTACCTATGAGCTTGTAAGACGTAGACGGATCACATATTTAAGGGGAATACCTGAAAGAGTTTATCCTTTCAGTAAAGGAGCATGCAGAAATTTATACGAGTTTTGCTGTCTTCCAAGCAGTAAATACAGATTGGAATCATTACCAACAACTCTGGAACTTGAAGAAAAATCAAGACCTTACACATGTACGGATGTTGCAACATGTCGTTGTTGCTGA

Protein Analysis

348

Amino Acids

39.38

Weight (kDa)

8.92

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 166 - 283 6.2e-31 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51390 AT3G51390
fragaria_vesca FvH4_1g10780 FvH4_6g14950
malus_domestica MD02G1121800.v1.1 MD15G1235400.v1.1
prunus_persica Prupe.7G177700_v2.0.a1 Prupe.7G177700_v2.0.a1
pyrus_communis pycom02g09470 pycom15g20960
rosa_chinensis RchiOBHm_Chr2g0097961
rosa_laevigata RLG00000016746
rosa_multiflora Rmu_sc0009572.1_g000004
rosa_roxburghii Rroxscaffold_2G00144420
rosa_rugosa Rorug02G0069300
rosa_samantha Rh2AG116300 Rh2BG119200 Rh2CG120800 Rh2DG120500
rosa_wichuraiana Rw2G009100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 95
AccI GTMKAC 2 cut(s) 212, 853
AciI CCGC 1 cut(s) 93
AclI AACGTT 1 cut(s) 15
AclWI GGATC 2 cut(s) 83, 866
AcsI RAATTY 3 cut(s) 322, 629, 919
AcuI CTGAAG 2 cut(s) 554, 719
AfaI GTAC 3 cut(s) 62, 641, 1018
AfeI AGCGCT 1 cut(s) 718
AfiI CCNNNNNNNGG 1 cut(s) 99
AflIII ACRYGT 2 cut(s) 1013, 1031
AgeI ACCGGT 1 cut(s) 57
AgsI TTSAA 4 cut(s) 254, 327, 369, 992
AjnI CCWGG 1 cut(s) 280
AleI CACNNNNGTG 1 cut(s) 585
AluBI AGCT 2 cut(s) 807, 841
AluI AGCT 2 cut(s) 807, 841
Alw26I GTCTC 3 cut(s) 27, 30, 647
AlwI GGATC 2 cut(s) 83, 866
Aor51HI AGCGCT 1 cut(s) 718
ApeKI GCWGC 2 cut(s) 136, 523
ApoI RAATTY 3 cut(s) 322, 629, 919
AsiGI ACCGGT 1 cut(s) 57
AspLEI GCGC 1 cut(s) 719
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 2 cut(s) 142, 572
BaeI ACNNNNGTAYC 2 cut(s) 631, 664
BbsI GAAGAC 4 cut(s) 65, 197, 421, 932
BbvI GCAGC 2 cut(s) 123, 535
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 282
BciVI GTATCC 1 cut(s) 480
BclI TGATCA 1 cut(s) 577
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 3 cut(s) 27, 30, 647
BfoI RGCGCY 1 cut(s) 720
BfuI GTATCC 1 cut(s) 480
BisI GCNGC 2 cut(s) 137, 524
BlsI GCNGC 2 cut(s) 138, 525
Bme1390I CCNGG 2 cut(s) 282, 477
BmrFI CCNGG 2 cut(s) 282, 477
BmsI GCATC 5 cut(s) 123, 148, 286, 687, 721
BpiI GAAGAC 4 cut(s) 65, 197, 421, 932
BpuMI CCSGG 1 cut(s) 477
Bsa29I ATCGAT 1 cut(s) 764
BsaBI GATNNNNATC 1 cut(s) 964
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 206, 443
BsaWI WCCGGW 1 cut(s) 57
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse118I RCCGGY 3 cut(s) 21, 57, 66
Bse1I ACTGG 2 cut(s) 679, 682
Bse3DI GCAATG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 964
BseBI CCWGG 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 764
BseDI CCNNGG 2 cut(s) 206, 443
BseGI GGATG 3 cut(s) 678, 736, 1027
BseJI GATNNNNATC 1 cut(s) 964
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 306
BseNI ACTGG 2 cut(s) 679, 682
BseRI GAGGAG 2 cut(s) 773, 776
BseXI GCAGC 2 cut(s) 123, 535
BshTI ACCGGT 1 cut(s) 57
BshVI ATCGAT 1 cut(s) 764
BsiSI CCGG 5 cut(s) 22, 58, 67, 270, 477
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 3 cut(s) 27, 30, 647
Bso31I GGTCTC 1 cut(s) 30
Bsp143I GATC 6 cut(s) 6, 88, 533, 577, 774, 858
Bsp19I CCATGG 1 cut(s) 206
BspACI CCGC 1 cut(s) 93
BspDI ATCGAT 1 cut(s) 764
BspHI TCATGA 2 cut(s) 547, 738
BspPI GGATC 2 cut(s) 83, 866
BspQI GCTCTTC 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 30
BsrBI CCGCTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 3 cut(s) 21, 57, 66
BsrI ACTGG 2 cut(s) 679, 682
BssAI RCCGGY 3 cut(s) 21, 57, 66
BssECI CCNNGG 2 cut(s) 206, 443
BssMI GATC 6 cut(s) 6, 88, 533, 577, 774, 858
BssNAI GTATAC 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 206, 443
Bst1107I GTATAC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 4 cut(s) 310, 349, 394, 512
Bst6I CTCTTC 4 cut(s) 280, 426, 645, 695
BstC8I GCNNGC 2 cut(s) 363, 913
BstDSI CCRYGG 1 cut(s) 206
BstEII GGTNACC 1 cut(s) 754
BstF5I GGATG 3 cut(s) 678, 736, 1027
BstH2I RGCGCY 1 cut(s) 720
BstHHI GCGC 1 cut(s) 719
BstKTI GATC 6 cut(s) 9, 91, 536, 580, 777, 861
BstMAI GTCTC 3 cut(s) 27, 30, 647
BstMBI GATC 6 cut(s) 6, 88, 533, 577, 774, 858
BstMWI GCNNNNNNNGC 2 cut(s) 227, 378
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 4 cut(s) 606, 915, 1017, 1035
BstPI GGTNACC 1 cut(s) 754
BstSCI CCNGG 2 cut(s) 280, 475
BstV1I GCAGC 2 cut(s) 123, 535
BstV2I GAAGAC 4 cut(s) 65, 197, 421, 932
BstZ17I GTATAC 1 cut(s) 213
Bsu15I ATCGAT 1 cut(s) 764
BsuI GTATCC 1 cut(s) 480
BsuTUI ATCGAT 1 cut(s) 764
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 3 cut(s) 678, 736, 1027
BtsIMutI CAGTG 2 cut(s) 315, 399
Cac8I GCNNGC 2 cut(s) 363, 913
CciI TCATGA 2 cut(s) 547, 738
CfoI GCGC 1 cut(s) 719
Cfr10I RCCGGY 3 cut(s) 21, 57, 66
ClaI ATCGAT 1 cut(s) 764
Csp6I GTAC 3 cut(s) 61, 640, 1017
CspAI ACCGGT 1 cut(s) 57
CviAII CATG 7 cut(s) 207, 548, 603, 739, 912, 1014, 1032
CviJI RGCY 8 cut(s) 230, 273, 285, 361, 526, 595, 807, 841
CviKI_1 RGCY 8 cut(s) 230, 273, 285, 361, 526, 595, 807, 841
CviQI GTAC 3 cut(s) 61, 640, 1017
DpnI GATC 6 cut(s) 8, 90, 535, 579, 776, 860
DpnII GATC 6 cut(s) 6, 88, 533, 577, 774, 858
DraI TTTAAA 1 cut(s) 117
Eam1104I CTCTTC 4 cut(s) 280, 426, 645, 695
EarI CTCTTC 4 cut(s) 280, 426, 645, 695
Eco130I CCWWGG 2 cut(s) 206, 443
Eco31I GGTCTC 1 cut(s) 30
Eco47III AGCGCT 1 cut(s) 718
Eco57I CTGAAG 2 cut(s) 554, 719
Eco91I GGTNACC 1 cut(s) 754
EcoO65I GGTNACC 1 cut(s) 754
EcoRI GAATTC 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 206, 443
EcoT22I ATGCAT 1 cut(s) 608
ErhI CCWWGG 2 cut(s) 206, 443
FaeI CATG 7 cut(s) 210, 551, 606, 742, 915, 1017, 1035
FalI AAGNNNNNCTT 2 cut(s) 484, 516
FatI CATG 7 cut(s) 206, 547, 602, 738, 911, 1013, 1031
FauI CCCGC 1 cut(s) 100
FbaI TGATCA 1 cut(s) 577
FblI GTMKAC 2 cut(s) 212, 853
Fnu4HI GCNGC 2 cut(s) 137, 524
FokI GGATG 3 cut(s) 665, 743, 1034
Fsp4HI GCNGC 2 cut(s) 137, 524
GlaI GCGC 1 cut(s) 718
GluI GCNGC 2 cut(s) 137, 524
HaeII RGCGCY 1 cut(s) 720
HapII CCGG 5 cut(s) 22, 58, 67, 270, 477
HhaI GCGC 1 cut(s) 719
Hin1II CATG 7 cut(s) 210, 551, 606, 742, 915, 1017, 1035
Hin6I GCGC 1 cut(s) 717
HinP1I GCGC 1 cut(s) 717
HinfI GANTC 2 cut(s) 35, 965
HpaII CCGG 5 cut(s) 22, 58, 67, 270, 477
HphI GGTGA 2 cut(s) 142, 572
Hpy166II GTNNAC 3 cut(s) 55, 213, 854
Hpy188I TCNGA 6 cut(s) 32, 88, 99, 144, 531, 819
Hpy188III TCNNGA 5 cut(s) 548, 670, 739, 983, 1002
Hpy8I GTNNAC 3 cut(s) 55, 213, 854
HpyAV CCTTC 2 cut(s) 392, 721
HpyCH4III ACNGT 4 cut(s) 310, 349, 394, 512
HpyCH4IV ACGT 2 cut(s) 15, 850
HpyCH4V TGCA 8 cut(s) 125, 139, 299, 606, 659, 734, 915, 1028
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 378
HpySE526I ACGT 2 cut(s) 15, 850
Hsp92II CATG 7 cut(s) 210, 551, 606, 742, 915, 1017, 1035
HspAI GCGC 1 cut(s) 717
Ksp22I TGATCA 1 cut(s) 577
Kzo9I GATC 6 cut(s) 6, 88, 533, 577, 774, 858
LguI GCTCTTC 1 cut(s) 280
LmnI GCTCC 5 cut(s) 47, 218, 447, 509, 908
Lsp1109I GCAGC 2 cut(s) 123, 535
LweI GCATC 5 cut(s) 123, 148, 286, 687, 721
MaeII ACGT 2 cut(s) 15, 850
MaeIII GTNAC 5 cut(s) 262, 388, 554, 754, 792
MalI GATC 6 cut(s) 8, 90, 535, 579, 776, 860
MbiI CCGCTC 1 cut(s) 95
MboI GATC 6 cut(s) 6, 88, 533, 577, 774, 858
MluCI AATT 3 cut(s) 322, 629, 919
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 441
Mph1103I ATGCAT 1 cut(s) 608
MseI TTAA 5 cut(s) 11, 116, 426, 713, 869
MslI CAYNNNNRTG 5 cut(s) 546, 552, 585, 611, 743
MspI CCGG 5 cut(s) 22, 58, 67, 270, 477
MspR9I CCNGG 2 cut(s) 282, 477
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 227, 378
NciI CCSGG 1 cut(s) 477
NcoI CCATGG 1 cut(s) 206
NdeII GATC 6 cut(s) 6, 88, 533, 577, 774, 858
NlaIII CATG 7 cut(s) 210, 551, 606, 742, 915, 1017, 1035
NmuCI GTSAC 2 cut(s) 388, 554
NsiI ATGCAT 1 cut(s) 608
NspI RCATGY 4 cut(s) 606, 915, 1017, 1035
OliI CACNNNNGTG 1 cut(s) 585
PaeI GCATGC 1 cut(s) 915
PagI TCATGA 2 cut(s) 547, 738
PciI ACATGT 2 cut(s) 1013, 1031
PciSI GCTCTTC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 965
PfoI TCCNGGA 1 cut(s) 475
PinAI ACCGGT 1 cut(s) 57
PkrI GCNGC 2 cut(s) 138, 525
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PscI ACATGT 2 cut(s) 1013, 1031
Psp1406I AACGTT 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 280
PspEI GGTNACC 1 cut(s) 754
PspGI CCWGG 1 cut(s) 280
RsaI GTAC 3 cut(s) 62, 641, 1018
RsaNI GTAC 3 cut(s) 61, 640, 1017
RseI CAYNNNNRTG 5 cut(s) 546, 552, 585, 611, 743
SapI GCTCTTC 1 cut(s) 280
SaqAI TTAA 5 cut(s) 11, 116, 426, 713, 869
SatI GCNGC 2 cut(s) 137, 524
Sau3AI GATC 6 cut(s) 6, 88, 533, 577, 774, 858
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 2 cut(s) 282, 477
SfaNI GCATC 5 cut(s) 123, 148, 286, 687, 721
SmiMI CAYNNNNRTG 5 cut(s) 546, 552, 585, 611, 743
SphI GCATGC 1 cut(s) 915
Sse9I AATT 3 cut(s) 322, 629, 919
SsiI CCGC 1 cut(s) 93
SspI AATATT 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 280, 475
StyI CCWWGG 2 cut(s) 206, 443
TaaI ACNGT 4 cut(s) 310, 349, 394, 512
TaiI ACGT 2 cut(s) 18, 853
TaqI TCGA 1 cut(s) 764
TasI AATT 3 cut(s) 322, 629, 919
TfiI GAWTC 1 cut(s) 965
Tru1I TTAA 5 cut(s) 11, 116, 426, 713, 869
Tru9I TTAA 5 cut(s) 11, 116, 426, 713, 869
TscAI CASTG 2 cut(s) 315, 399
TseFI GTSAC 2 cut(s) 388, 554
TseI GCWGC 2 cut(s) 136, 523
Tsp45I GTSAC 2 cut(s) 388, 554
TspGWI ACGGA 2 cut(s) 871, 1034
TspRI CASTG 2 cut(s) 315, 399
XapI RAATTY 3 cut(s) 322, 629, 919
XceI RCATGY 4 cut(s) 606, 915, 1017, 1035
XmiI GTMKAC 2 cut(s) 212, 853
Zsp2I ATGCAT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.