Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011245

Physical Location & Seq

Genomic Coordinates Reverse (-)

9258176 .. 9259177

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGACGATTTTTACCGTGTGCGGCACTCTCCGGGACTCCCGGGCATTCGATTGGTGCTGCCGGTTTCTTCCTTGCCTCTCCGATCCCGCTCGGAGGTCTGCTTTGGGTTTAAAGGTTGCATTGGTGACGCTGCTGCATCTGATATATGCTGGTGTTCTTTTTCTGTTTAATGAAGGTTTGATTGAGAAACTTGAAACAGAACCATGGTATACAGGAACATATTTGACTCTCTTTGTCATTGCATTGGTTCAATACTTGGTTACTTCTGGCTCTTCTCCTGGCTATGTCCTTGATGCAATGAGGACAGTGAATGAGGCGAATTCAGCAACAGTATCAAAACAGCCTGCAGCTTCAAGCAAAGGAAGCGTGGTTGTGACAGTGGGAGGCAGTTATGGAACACCTTGGAGAAAACTTGTAATGGACTTGTATCCTCTCGGAACACCGGTTAGCATCTGCTCCAAGTGTAATGCTGAGCAGCCACCCAGATCAAAGCATTGCCGTGATTGTGAAAGATGTGTTCTTCAGTTTGATCACCATTGTCCTAGCTTTGGAATATGCATCGGTGTGGGTAATCGTTTTAAATACTGGTGCTACATTTGTGAAGAGACTGCATTGTGCCTCTGGACTGGTATCCTATATATCACATACCTGAAGACTAGTGATATATCAAGTGCTTGGTGGAAGGATGCAATCATGATTGTGCTGTTGGTTCCCTTGTCGATTGTGCTCCTCTTTCTCCTCTTCTTGCTACTCTTTCACAGCTATCTTATTCTCACCAATCAAACTACCGATGAGTATGTAAGACGTAGACGGATCACATATTTCAGGGGAATTCCTGAAAGAGTATATCCTTTCAGTAAAGGAGCATGCAGAAATTTATACGAGTTCTGCTGTCTTCGAAGCAGTAAATACAGAATGGAATCGGTACCAACAGTTCTGGAACTTGAAGAAAAAGCAAGACCTTATACATGTACGGAAGTGGTAACATGTCGATGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009628 GO:0009651 GO:0009705 GO:0016020 GO:0031090 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048731 GO:0048856 GO:0050896 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

334

Amino Acids

37.81

Weight (kDa)

8.59

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	150 - 268	6.8e-30	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51390 AT3G51390
fragaria_vesca	FvH4_1g10780 FvH4_6g14950
malus_domestica	MD02G1121800.v1.1 MD15G1235400.v1.1
prunus_persica	Prupe.7G177700_v2.0.a1 Prupe.7G177700_v2.0.a1
pyrus_communis	pycom02g09470 pycom15g20960
rosa_chinensis	RchiOBHm_Chr2g0097961
rosa_laevigata	RLG00000016746
rosa_multiflora	Rmu_sc0009572.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144420
rosa_rugosa	Rorug02G0069300
rosa_samantha	Rh2AG116300 Rh2BG119200 Rh2CG120800 Rh2DG120500
rosa_wichuraiana	Rw2G009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	925
AccB1I	GGYRCC	1 cut(s)	925
AccBSI	CCGCTC	1 cut(s)	89
AccI	GTMKAC	2 cut(s)	209, 808
AciI	CCGC	2 cut(s)	21, 87
AclWI	GGATC	2 cut(s)	77, 821
AcsI	RAATTY	3 cut(s)	319, 831, 874
AcuI	CTGAAG	2 cut(s)	506, 671
AfaI	GTAC	2 cut(s)	927, 973
AfiI	CCNNNNNNNGG	2 cut(s)	93, 548
AflIII	ACRYGT	2 cut(s)	968, 986
AgeI	ACCGGT	1 cut(s)	442
AgsI	TTSAA	4 cut(s)	194, 251, 354, 947
AhlI	ACTAGT	1 cut(s)	656
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	3 cut(s)	350, 546, 762
AluI	AGCT	3 cut(s)	350, 546, 762
Alw21I	GWGCWC	1 cut(s)	729
Alw26I	GTCTC	1 cut(s)	599
AlwI	GGATC	2 cut(s)	77, 821
Ama87I	CYCGRG	1 cut(s)	39
ApeKI	GCWGC	5 cut(s)	57, 130, 133, 347, 475
ApoI	RAATTY	3 cut(s)	319, 831, 874
AsiGI	ACCGGT	1 cut(s)	442
Asp718I	GGTACC	1 cut(s)	925
AsuC2I	CCSGG	3 cut(s)	32, 40, 41
AsuHPI	GGTGA	3 cut(s)	136, 524, 766
AsuII	TTCGAA	1 cut(s)	898
AvaI	CYCGRG	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	925
BbsI	GAAGAC	2 cut(s)	659, 887
Bbv12I	GWGCWC	1 cut(s)	729
BbvI	GCAGC	5 cut(s)	44, 117, 120, 359, 487
BceAI	ACGGC	1 cut(s)	483
BciT130I	CCWGG	1 cut(s)	279
BciVI	GTATCC	2 cut(s)	438, 641
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	3 cut(s)	32, 40, 41
BcoDI	GTCTC	1 cut(s)	599
BcuI	ACTAGT	1 cut(s)	656
BfaI	CTAG	2 cut(s)	543, 657
BfmI	CTRYAG	1 cut(s)	345
BfuI	GTATCC	2 cut(s)	438, 641
BisI	GCNGC	6 cut(s)	22, 58, 131, 134, 348, 476
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	6 cut(s)	23, 59, 132, 135, 349, 477
Bme1390I	CCNGG	4 cut(s)	32, 40, 41, 279
BmeT110I	CYCGRG	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	711, 927
BmrFI	CCNGG	4 cut(s)	32, 40, 41, 279
BmsI	GCATC	5 cut(s)	145, 283, 459, 567, 676
BpiI	GAAGAC	2 cut(s)	659, 887
Bpu1102I	GCTNAGC	1 cut(s)	471
Bpu14I	TTCGAA	1 cut(s)	898
BpuMI	CCSGG	3 cut(s)	32, 40, 41
BsaJI	CCNNGG	3 cut(s)	39, 203, 401
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 548
Bse118I	RCCGGY	2 cut(s)	60, 442
Bse1I	ACTGG	2 cut(s)	590, 631
Bse3DI	GCAATG	3 cut(s)	237, 303, 493
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	3 cut(s)	39, 203, 401
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	2 cut(s)	93, 548
BseMI	GCAATG	3 cut(s)	237, 303, 493
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	590, 631
BseRI	GAGGAG	2 cut(s)	719, 728
BseXI	GCAGC	5 cut(s)	44, 117, 120, 359, 487
BshNI	GGYRCC	1 cut(s)	925
BshTI	ACCGGT	1 cut(s)	442
BsiHKAI	GWGCWC	1 cut(s)	729
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	4 cut(s)	31, 40, 61, 443
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	93, 548
BsmAI	GTCTC	1 cut(s)	599
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	39
Bsp119I	TTCGAA	1 cut(s)	898
Bsp1286I	GDGCHC	1 cut(s)	729
Bsp143I	GATC	4 cut(s)	82, 485, 529, 813
Bsp1720I	GCTNAGC	1 cut(s)	471
Bsp19I	CCATGG	1 cut(s)	203
BspACI	CCGC	2 cut(s)	21, 87
BspCNI	CTCAG	1 cut(s)	463
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	2 cut(s)	711, 927
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	2 cut(s)	77, 821
BspQI	GCTCTTC	1 cut(s)	277
BspT104I	TTCGAA	1 cut(s)	898
BspT107I	GGYRCC	1 cut(s)	925
BsrBI	CCGCTC	1 cut(s)	89
BsrDI	GCAATG	3 cut(s)	237, 303, 493
BsrFI	RCCGGY	2 cut(s)	60, 442
BsrI	ACTGG	2 cut(s)	590, 631
BssAI	RCCGGY	2 cut(s)	60, 442
BssECI	CCNNGG	3 cut(s)	39, 203, 401
BssMI	GATC	4 cut(s)	82, 485, 529, 813
BssNAI	GTATAC	1 cut(s)	210
BssT1I	CCWWGG	2 cut(s)	203, 401
Bst1107I	GTATAC	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	5 cut(s)	16, 307, 331, 379, 934
Bst6I	CTCTTC	3 cut(s)	277, 597, 746
BstBI	TTCGAA	1 cut(s)	898
BstC8I	GCNNGC	2 cut(s)	345, 868
BstDEI	CTNAG	1 cut(s)	471
BstDSI	CCRYGG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	691
BstKTI	GATC	4 cut(s)	85, 488, 532, 816
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	4 cut(s)	82, 485, 529, 813
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 363
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	3 cut(s)	870, 972, 990
BstSCI	CCNGG	4 cut(s)	30, 38, 39, 277
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	5 cut(s)	44, 117, 120, 359, 487
BstV2I	GAAGAC	2 cut(s)	659, 887
BstZ17I	GTATAC	1 cut(s)	210
BsuI	GTATCC	2 cut(s)	438, 641
BtgI	CCRYGG	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	691
BtsIMutI	CAGTG	2 cut(s)	312, 384
Cac8I	GCNNGC	2 cut(s)	345, 868
CciI	TCATGA	1 cut(s)	693
Cfr10I	RCCGGY	2 cut(s)	60, 442
Cfr9I	CCCGGG	1 cut(s)	39
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	926, 972
CspAI	ACCGGT	1 cut(s)	442
CviAII	CATG	5 cut(s)	204, 694, 867, 969, 987
CviJI	RGCY	7 cut(s)	270, 282, 343, 350, 478, 546, 762
CviKI_1	RGCY	7 cut(s)	270, 282, 343, 350, 478, 546, 762
CviQI	GTAC	2 cut(s)	926, 972
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	4 cut(s)	84, 487, 531, 815
DpnII	GATC	4 cut(s)	82, 485, 529, 813
DraI	TTTAAA	2 cut(s)	111, 580
Eam1104I	CTCTTC	3 cut(s)	277, 597, 746
EarI	CTCTTC	3 cut(s)	277, 597, 746
Eco130I	CCWWGG	2 cut(s)	203, 401
Eco57I	CTGAAG	2 cut(s)	506, 671
Eco88I	CYCGRG	1 cut(s)	39
EcoRI	GAATTC	2 cut(s)	319, 831
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	2 cut(s)	203, 401
EcoT22I	ATGCAT	1 cut(s)	560
ErhI	CCWWGG	2 cut(s)	203, 401
FaeI	CATG	5 cut(s)	207, 697, 870, 972, 990
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	5 cut(s)	203, 693, 866, 968, 986
FauI	CCCGC	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	529
FblI	GTMKAC	2 cut(s)	209, 808
Fnu4HI	GCNGC	6 cut(s)	22, 58, 131, 134, 348, 476
FokI	GGATG	1 cut(s)	698
Fsp4HI	GCNGC	6 cut(s)	22, 58, 131, 134, 348, 476
FspBI	CTAG	2 cut(s)	543, 657
GluI	GCNGC	6 cut(s)	22, 58, 131, 134, 348, 476
HapII	CCGG	4 cut(s)	31, 40, 61, 443
HgaI	GACGC	1 cut(s)	136
Hin1II	CATG	5 cut(s)	207, 697, 870, 972, 990
HinfI	GANTC	3 cut(s)	35, 226, 920
HpaII	CCGG	4 cut(s)	31, 40, 61, 443
HphI	GGTGA	3 cut(s)	136, 524, 766
Hpy166II	GTNNAC	2 cut(s)	210, 809
Hpy188I	TCNGA	4 cut(s)	82, 93, 141, 437
Hpy188III	TCNNGA	4 cut(s)	622, 694, 836, 938
Hpy8I	GTNNAC	2 cut(s)	210, 809
HpyAV	CCTTC	2 cut(s)	167, 676
HpyCH4III	ACNGT	5 cut(s)	16, 307, 331, 379, 934
HpyCH4IV	ACGT	1 cut(s)	805
HpyCH4V	TGCA	9 cut(s)	119, 136, 242, 296, 347, 558, 611, 689, 870
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 363
HpyF3I	CTNAG	1 cut(s)	471
HpySE526I	ACGT	1 cut(s)	805
Hsp92II	CATG	5 cut(s)	207, 697, 870, 972, 990
KpnI	GGTACC	1 cut(s)	929
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	4 cut(s)	82, 485, 529, 813
LguI	GCTCTTC	1 cut(s)	277
LmnI	GCTCC	3 cut(s)	461, 732, 863
Lsp1109I	GCAGC	5 cut(s)	44, 117, 120, 359, 487
LweI	GCATC	5 cut(s)	145, 283, 459, 567, 676
MaeI	CTAG	2 cut(s)	543, 657
MaeII	ACGT	1 cut(s)	805
MaeIII	GTNAC	4 cut(s)	124, 259, 373, 982
MalI	GATC	4 cut(s)	84, 487, 531, 815
MbiI	CCGCTC	1 cut(s)	89
MboI	GATC	4 cut(s)	82, 485, 529, 813
MboII	GAAGA	8 cut(s)	59, 264, 512, 614, 664, 733, 887, 959
MhlI	GDGCHC	1 cut(s)	729
MluCI	AATT	3 cut(s)	319, 831, 874
MlyI	GAGTC	2 cut(s)	29, 220
MnlI	CCTC	9 cut(s)	86, 87, 294, 307, 377, 441, 629, 740, 749
Mph1103I	ATGCAT	1 cut(s)	560
MseI	TTAA	3 cut(s)	110, 168, 579
MslI	CAYNNNNRTG	4 cut(s)	498, 563, 698, 991
MspI	CCGG	4 cut(s)	31, 40, 61, 443
MspR9I	CCNGG	4 cut(s)	32, 40, 41, 279
Mva1269I	GAATGC	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	323, 363
NciI	CCSGG	3 cut(s)	32, 40, 41
NcoI	CCATGG	1 cut(s)	203
NdeII	GATC	4 cut(s)	82, 485, 529, 813
NlaIII	CATG	5 cut(s)	207, 697, 870, 972, 990
NlaIV	GGNNCC	2 cut(s)	711, 927
NmuCI	GTSAC	2 cut(s)	124, 373
NsiI	ATGCAT	1 cut(s)	560
NspI	RCATGY	3 cut(s)	870, 972, 990
NspV	TTCGAA	1 cut(s)	898
PaeI	GCATGC	1 cut(s)	870
PagI	TCATGA	1 cut(s)	693
PciI	ACATGT	2 cut(s)	968, 986
PciSI	GCTCTTC	1 cut(s)	277
PctI	GAATGC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	920
PfoI	TCCNGGA	1 cut(s)	30
PinAI	ACCGGT	1 cut(s)	442
PkrI	GCNGC	6 cut(s)	23, 59, 132, 135, 349, 477
PleI	GAGTC	2 cut(s)	29, 220
PpsI	GAGTC	2 cut(s)	29, 220
PscI	ACATGT	2 cut(s)	968, 986
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	711, 927
PsrI	GAACNNNNNNTAC	2 cut(s)	918, 950
PstI	CTGCAG	1 cut(s)	349
RsaI	GTAC	2 cut(s)	927, 973
RsaNI	GTAC	2 cut(s)	926, 972
RseI	CAYNNNNRTG	4 cut(s)	498, 563, 698, 991
SapI	GCTCTTC	1 cut(s)	277
SaqAI	TTAA	3 cut(s)	110, 168, 579
SatI	GCNGC	6 cut(s)	22, 58, 131, 134, 348, 476
Sau3AI	GATC	4 cut(s)	82, 485, 529, 813
SchI	GAGTC	2 cut(s)	29, 220
ScrFI	CCNGG	4 cut(s)	32, 40, 41, 279
SduI	GDGCHC	1 cut(s)	729
SfaNI	GCATC	5 cut(s)	145, 283, 459, 567, 676
SfcI	CTRYAG	1 cut(s)	345
SfuI	TTCGAA	1 cut(s)	898
SmaI	CCCGGG	1 cut(s)	41
SmiMI	CAYNNNNRTG	4 cut(s)	498, 563, 698, 991
SpeI	ACTAGT	1 cut(s)	656
SphI	GCATGC	1 cut(s)	870
Sse9I	AATT	3 cut(s)	319, 831, 874
SsiI	CCGC	2 cut(s)	21, 87
SspMI	CTAG	2 cut(s)	543, 657
StyD4I	CCNGG	4 cut(s)	30, 38, 39, 277
StyI	CCWWGG	2 cut(s)	203, 401
TaaI	ACNGT	5 cut(s)	16, 307, 331, 379, 934
TaiI	ACGT	1 cut(s)	808
TaqI	TCGA	4 cut(s)	48, 719, 898, 991
TasI	AATT	3 cut(s)	319, 831, 874
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	920
Tru1I	TTAA	3 cut(s)	110, 168, 579
Tru9I	TTAA	3 cut(s)	110, 168, 579
TscAI	CASTG	2 cut(s)	312, 384
TseFI	GTSAC	2 cut(s)	124, 373
TseI	GCWGC	5 cut(s)	57, 130, 133, 347, 475
Tsp45I	GTSAC	2 cut(s)	124, 373
TspDTI	ATGAA	1 cut(s)	186
TspGWI	ACGGA	2 cut(s)	826, 989
TspMI	CCCGGG	1 cut(s)	39
TspRI	CASTG	2 cut(s)	312, 384
XapI	RAATTY	3 cut(s)	319, 831, 874
XceI	RCATGY	3 cut(s)	870, 972, 990
XmaI	CCCGGG	1 cut(s)	39
XmiI	GTMKAC	2 cut(s)	209, 808
XspI	CTAG	2 cut(s)	543, 657
Zsp2I	ATGCAT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.