Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010322

Physical Location & Seq

Genomic Coordinates Forward (+)

19168672 .. 19171227

Gene Structure 2556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGATGCTTCATTGTCTCCATTCGATCACCAAAAAACTCAAAACACAGAGCCAAAGAAAAGCTTCATTACCTCACTAATCACTCTCCGTTCAAACAACATCAAAGAAGACACATACTTCGTCTCAGAACTCAAACCCACGGAGCAAAAATCACTTCAAGAACTCAAAGAAAAGCTCTCAGCTTCATCCTCCAAAGCTTCTTCAATGTGGGGAGTCTCACTCCTCGGTGGAGACGACAAAGCTGACGTAATCCTCCTCAAGTTCCTCAGAGCAAGAGATTTCAAAGTAGCAGACTCTTTGAGAATGCTTGAGAAGTGTTTGGAGTGGAGAGAAGAGTTCAAAGCAGAGAAATTGACAGAAGAAGATCTGGGTTTTAAAGATTTGGAAGGTAAAGTTGCTTACATGAGAGGCTACGACAAAGAAGGACACCCAGTTTGTTACAATGCTTATGGTGTGTTTAAAGAGAAAGAGATGTATGAGAGAGTGTTTGGTGATGAAGAGAAGCTTAACAAGTTTCTGAGATGGAGAGTTCAGGTTTTGGAGAGAGGTGTTAAAATGCTTCATTTTAAACCTGGTGGTGTTAATTCCATTATTCAAGTTACAGATCTTAAAGATATGCCTAAGAGAGAGCTTAGAGTTGCTTCTAATCAGATCCTCTCTCTTTTTCAAGATAATTACCCTGAATTGGTTGCTACTAAGATATTCATAAACGTGCCTTGGTACTTCAGTGTGATCTACTCAATGTTCAGCCCATTCCTGACTCAGAGAACAAAGAGCAAGTTTGTGATGTCCAAAGAAGGCAATGCAGCAGAAACACTCTACAAGTTCATTAGGCCAGAAGATATTCCGGTGCAATACGGTGGTCTTAGCCGTCCTACTGATTCGCAAAACGGACCGCCAAAACCGGCGTCTGAATTCTCCATCAAGGGTGGTGAGAAAGTTAACATTCAGATTGAAGGCATTGAGGGTGGAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAGTACAGTGCAGAGTTTGTTCCAAACGCTGAAGAGAGTTACGCGATCGTTGTCGAGAAACCGAAGAAGATGAAAGCTACAGATGAAGCTGTTTGCAACTCTTTCACTACAGTAGAAGCTGGGAAGCTCATTCTCTCTGTTGACAATACTCTCTCTCGCAAGAAGAAAGTTGCTGCTTACCGTTACACTGTCCGGAAATCTACTACAACCGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

409

Amino Acids

46.51

Weight (kDa)

8.41

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	52 - 105	2.7e-13	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	129 - 288	4.5e-33	CRAL/TRIO domain
GOLD_PATL1_C	PF25099	309 - 393	6.7e-31	Patellin-1-like, C-terminal GOLD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51670
fragaria_vesca	FvH4_6g10580
malus_domestica	MD04G1167000.v1.1 MD12G1180600.v1.1
prunus_persica	Prupe.6G285300_v2.0.a1 Prupe.6G285300_v2.0.a1
pyrus_communis	pycom04g14840 pycom12g17020
rosa_chinensis	RchiOBHm_Chr3g0461561
rosa_laevigata	RLG00000014119 RLG00000024918
rosa_multiflora	Rmu_co8289033.1_g000001 Rmu_ssc0000193.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418140 Rroxscaffold_6G00418510
rosa_rugosa	Rorug03G0051900 Rorug06G0023600
rosa_samantha	Rh3AG110000 Rh3BG113300 Rh3DG114900
rosa_wichuraiana	Rw3G009300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	984
AccII	CGCG	1 cut(s)	1058
AccIII	TCCGGA	1 cut(s)	1206
AciI	CCGC	1 cut(s)	896
AclWI	GGATC	1 cut(s)	646
AcsI	RAATTY	1 cut(s)	914
AcuI	CTGAAG	2 cut(s)	709, 1065
AcyI	GRCGYC	1 cut(s)	908
AfaI	GTAC	2 cut(s)	722, 1019
AfiI	CCNNNNNNNGG	2 cut(s)	685, 984
AgsI	TTSAA	8 cut(s)	93, 158, 204, 283, 340, 596, 668, 956
AjnI	CCWGG	1 cut(s)	571
Alw26I	GTCTC	4 cut(s)	21, 127, 220, 225
AlwI	GGATC	1 cut(s)	646
Aor13HI	TCCGGA	1 cut(s)	1206
AoxI	GGCC	1 cut(s)	833
ApeKI	GCWGC	2 cut(s)	806, 1187
ApoI	RAATTY	1 cut(s)	914
ArsI	GACNNNNNNTTYG	6 cut(s)	101, 133, 417, 449, 893, 925
Asp700I	GAANNNNTTC	2 cut(s)	62, 843
AspS9I	GGNCC	1 cut(s)	893
AsuHPI	GGTGA	3 cut(s)	20, 503, 944
AvaII	GGWCC	1 cut(s)	893
BaeI	ACNNNNGTAYC	2 cut(s)	712, 745
BbsI	GAAGAC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	818, 1174
BccI	CCATC	3 cut(s)	516, 929, 999
BceAI	ACGGC	1 cut(s)	855
BciT130I	CCWGG	1 cut(s)	573
BcoDI	GTCTC	4 cut(s)	21, 127, 220, 225
BfmI	CTRYAG	2 cut(s)	1092, 1122
BglII	AGATCT	2 cut(s)	364, 604
BisI	GCNGC	2 cut(s)	807, 1188
BlsI	GCNGC	2 cut(s)	808, 1189
Bme1390I	CCNGG	1 cut(s)	573
Bme18I	GGWCC	1 cut(s)	893
BmgT120I	GGNCC	1 cut(s)	893
BmrFI	CCNGG	1 cut(s)	573
BmrI	ACTGGG	1 cut(s)	425
BmuI	ACTGGG	1 cut(s)	425
BpiI	GAAGAC	1 cut(s)	114
BplI	GAGNNNNNCTC	2 cut(s)	204, 236
BpuEI	CTTGAG	2 cut(s)	242, 329
BsaHI	GRCGYC	1 cut(s)	908
BsaJI	CCNNGG	3 cut(s)	138, 223, 716
BsaWI	WCCGGW	2 cut(s)	847, 1206
Bsc4I	CCNNNNNNNGG	2 cut(s)	685, 984
Bse118I	RCCGGY	1 cut(s)	904
Bse1I	ACTGG	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	808
BseAI	TCCGGA	1 cut(s)	1206
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	3 cut(s)	138, 223, 716
BseGI	GGATG	3 cut(s)	10, 185, 1010
BseLI	CCNNNNNNNGG	2 cut(s)	685, 984
BseMI	GCAATG	1 cut(s)	808
BseMII	CTCAG	5 cut(s)	138, 192, 280, 509, 776
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	2 cut(s)	212, 245
BseXI	GCAGC	2 cut(s)	818, 1174
BseYI	CCCAGC	1 cut(s)	1133
BsgI	GTGCAG	1 cut(s)	1044
Bsh1236I	CGCG	1 cut(s)	1058
Bsh1285I	CGRYCG	1 cut(s)	1062
BshFI	GGCC	1 cut(s)	835
BsiEI	CGRYCG	1 cut(s)	1062
BsiSI	CCGG	3 cut(s)	848, 905, 1207
BslI	CCNNNNNNNGG	2 cut(s)	685, 984
BsmAI	GTCTC	4 cut(s)	21, 127, 220, 225
BsmBI	CGTCTC	2 cut(s)	127, 225
BsmI	GAATGC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	835
Bsp13I	TCCGGA	1 cut(s)	1206
Bsp143I	GATC	6 cut(s)	25, 364, 604, 651, 732, 1059
BspACI	CCGC	1 cut(s)	896
BspANI	GGCC	1 cut(s)	835
BspCNI	CTCAG	5 cut(s)	137, 191, 279, 510, 775
BspEI	TCCGGA	1 cut(s)	1206
BspFNI	CGCG	1 cut(s)	1058
BspPI	GGATC	1 cut(s)	646
BsrDI	GCAATG	1 cut(s)	808
BsrFI	RCCGGY	1 cut(s)	904
BsrI	ACTGG	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	904
BssECI	CCNNGG	3 cut(s)	138, 223, 716
BssMI	GATC	6 cut(s)	25, 364, 604, 651, 732, 1059
BssNI	GRCGYC	1 cut(s)	908
BssT1I	CCWWGG	1 cut(s)	716
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	6 cut(s)	860, 1022, 1126, 1196, 1204, 1225
Bst6I	CTCTTC	3 cut(s)	327, 492, 1041
BstACI	GRCGYC	1 cut(s)	908
BstDEI	CTNAG	9 cut(s)	124, 178, 266, 518, 621, 632, 696, 762, 866
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	3 cut(s)	10, 185, 1010
BstFNI	CGCG	1 cut(s)	1058
BstKTI	GATC	6 cut(s)	28, 367, 607, 654, 735, 1062
BstMAI	GTCTC	4 cut(s)	21, 127, 220, 225
BstMBI	GATC	6 cut(s)	25, 364, 604, 651, 732, 1059
BstMCI	CGRYCG	1 cut(s)	1062
BstNI	CCWGG	1 cut(s)	573
BstSCI	CCNGG	1 cut(s)	571
BstSFI	CTRYAG	2 cut(s)	1092, 1122
BstUI	CGCG	1 cut(s)	1058
BstV1I	GCAGC	2 cut(s)	818, 1174
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	3 cut(s)	364, 604, 651
BstYI	RGATCY	3 cut(s)	364, 604, 651
BsuRI	GGCC	1 cut(s)	835
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	10, 185, 1010
BtsIMutI	CAGTG	3 cut(s)	733, 1027, 1200
Cfr10I	RCCGGY	1 cut(s)	904
Cfr13I	GGNCC	1 cut(s)	893
CpoI	CGGWCCG	1 cut(s)	893
CseI	GACGC	1 cut(s)	897
CsiI	ACCWGGT	1 cut(s)	571
Csp6I	GTAC	2 cut(s)	721, 1018
CspI	CGGWCCG	1 cut(s)	893
CviAII	CATG	2 cut(s)	403, 984
CviQI	GTAC	2 cut(s)	721, 1018
DdeI	CTNAG	9 cut(s)	124, 178, 266, 518, 621, 632, 696, 762, 866
DpnI	GATC	6 cut(s)	27, 366, 606, 653, 734, 1061
DpnII	GATC	6 cut(s)	25, 364, 604, 651, 732, 1059
DraI	TTTAAA	3 cut(s)	376, 460, 568
Eam1104I	CTCTTC	3 cut(s)	327, 492, 1041
EarI	CTCTTC	3 cut(s)	327, 492, 1041
Eco130I	CCWWGG	1 cut(s)	716
Eco47I	GGWCC	1 cut(s)	893
Eco57I	CTGAAG	2 cut(s)	709, 1065
EcoRI	GAATTC	1 cut(s)	914
EcoRII	CCWGG	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	716
ErhI	CCWWGG	1 cut(s)	716
Esp3I	CGTCTC	2 cut(s)	127, 225
FaeI	CATG	2 cut(s)	406, 987
FaiI	YATR	9 cut(s)	115, 404, 450, 477, 617, 707, 980, 985, 992
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 489, 521
FatI	CATG	2 cut(s)	402, 983
Fnu4HI	GCNGC	2 cut(s)	807, 1188
FokI	GGATG	3 cut(s)	17, 172, 1017
Fsp4HI	GCNGC	2 cut(s)	807, 1188
GluI	GCNGC	2 cut(s)	807, 1188
GsaI	CCCAGC	1 cut(s)	1137
HaeIII	GGCC	1 cut(s)	835
HapII	CCGG	3 cut(s)	848, 905, 1207
HgaI	GACGC	1 cut(s)	897
Hin1I	GRCGYC	1 cut(s)	908
Hin1II	CATG	2 cut(s)	406, 987
HincII	GTYRAC	2 cut(s)	943, 1156
HindII	GTYRAC	2 cut(s)	943, 1156
HindIII	AAGCTT	3 cut(s)	61, 195, 503
HinfI	GANTC	4 cut(s)	213, 293, 760, 881
HpaI	GTTAAC	1 cut(s)	943
HpaII	CCGG	3 cut(s)	848, 905, 1207
HphI	GGTGA	3 cut(s)	20, 503, 944
Hpy166II	GTNNAC	2 cut(s)	943, 1156
Hpy188I	TCNGA	7 cut(s)	127, 269, 519, 651, 765, 913, 951
Hpy188III	TCNNGA	5 cut(s)	158, 668, 757, 1069, 1207
Hpy8I	GTNNAC	2 cut(s)	943, 1156
HpyAV	CCTTC	4 cut(s)	380, 416, 791, 950
HpyCH4III	ACNGT	6 cut(s)	860, 1022, 1126, 1196, 1204, 1225
HpyCH4IV	ACGT	2 cut(s)	246, 711
HpyCH4V	TGCA	4 cut(s)	806, 853, 1025, 1110
HpyF3I	CTNAG	9 cut(s)	124, 178, 266, 518, 621, 632, 696, 762, 866
HpySE526I	ACGT	2 cut(s)	246, 711
Hsp92I	GRCGYC	1 cut(s)	908
Hsp92II	CATG	2 cut(s)	406, 987
Kpn2I	TCCGGA	1 cut(s)	1206
KspAI	GTTAAC	1 cut(s)	943
Kzo9I	GATC	6 cut(s)	25, 364, 604, 651, 732, 1059
LmnI	GCTCC	2 cut(s)	142, 971
Lsp1109I	GCAGC	2 cut(s)	818, 1174
MabI	ACCWGGT	1 cut(s)	571
MaeII	ACGT	2 cut(s)	246, 711
MaeIII	GTNAC	4 cut(s)	437, 598, 1052, 1196
MalI	GATC	6 cut(s)	27, 366, 606, 653, 734, 1061
MboI	GATC	6 cut(s)	25, 364, 604, 651, 732, 1059
MflI	RGATCY	3 cut(s)	364, 604, 651
MluCI	AATT	5 cut(s)	350, 583, 673, 683, 914
MlyI	GAGTC	3 cut(s)	222, 287, 754
MmeI	TCCRAC	1 cut(s)	979
MroI	TCCGGA	1 cut(s)	1206
MroXI	GAANNNNTTC	2 cut(s)	62, 843
MseI	TTAA	8 cut(s)	375, 459, 507, 552, 567, 582, 609, 942
MslI	CAYNNNNRTG	1 cut(s)	710
MspI	CCGG	3 cut(s)	848, 905, 1207
MspR9I	CCNGG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	573
MvnI	CGCG	1 cut(s)	1058
NdeII	GATC	6 cut(s)	25, 364, 604, 651, 732, 1059
NlaIII	CATG	2 cut(s)	406, 987
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	309
PdmI	GAANNNNTTC	2 cut(s)	62, 843
PfeI	GAWTC	1 cut(s)	881
PflMI	CCANNNNNTGG	1 cut(s)	984
PkrI	GCNGC	2 cut(s)	808, 1189
Ple19I	CGATCG	1 cut(s)	1062
PleI	GAGTC	3 cut(s)	221, 287, 754
PpsI	GAGTC	3 cut(s)	221, 287, 754
Psp6I	CCWGG	1 cut(s)	571
PspFI	CCCAGC	1 cut(s)	1133
PspGI	CCWGG	1 cut(s)	571
PspPI	GGNCC	1 cut(s)	893
PsuI	RGATCY	3 cut(s)	364, 604, 651
PvuI	CGATCG	1 cut(s)	1062
RsaI	GTAC	2 cut(s)	722, 1019
RsaNI	GTAC	2 cut(s)	721, 1018
RseI	CAYNNNNRTG	1 cut(s)	710
Rsr2I	CGGWCCG	1 cut(s)	893
RsrII	CGGWCCG	1 cut(s)	893
SaqAI	TTAA	8 cut(s)	375, 459, 507, 552, 567, 582, 609, 942
SatI	GCNGC	2 cut(s)	807, 1188
Sau3AI	GATC	6 cut(s)	25, 364, 604, 651, 732, 1059
Sau96I	GGNCC	1 cut(s)	893
SchI	GAGTC	3 cut(s)	222, 287, 754
ScrFI	CCNGG	1 cut(s)	573
SexAI	ACCWGGT	1 cut(s)	571
SfcI	CTRYAG	2 cut(s)	1092, 1122
SinI	GGWCC	1 cut(s)	893
SmiMI	CAYNNNNRTG	1 cut(s)	710
SmlI	CTYRAG	2 cut(s)	257, 308
SmoI	CTYRAG	2 cut(s)	257, 308
Sse9I	AATT	5 cut(s)	350, 583, 673, 683, 914
SsiI	CCGC	1 cut(s)	896
StyD4I	CCNGG	1 cut(s)	571
StyI	CCWWGG	1 cut(s)	716
TaaI	ACNGT	6 cut(s)	860, 1022, 1126, 1196, 1204, 1225
TaiI	ACGT	2 cut(s)	249, 714
TaqI	TCGA	2 cut(s)	24, 1068
TasI	AATT	5 cut(s)	350, 583, 673, 683, 914
TatI	WGTACW	1 cut(s)	1017
TfiI	GAWTC	1 cut(s)	881
Tru1I	TTAA	8 cut(s)	375, 459, 507, 552, 567, 582, 609, 942
Tru9I	TTAA	8 cut(s)	375, 459, 507, 552, 567, 582, 609, 942
TscAI	CASTG	3 cut(s)	733, 1027, 1207
TseI	GCWGC	2 cut(s)	806, 1187
TspDTI	ATGAA	8 cut(s)	55, 174, 510, 551, 694, 817, 1100, 1113
TspGWI	ACGGA	3 cut(s)	77, 155, 906
TspRI	CASTG	3 cut(s)	733, 1027, 1207
Van91I	CCANNNNNTGG	1 cut(s)	984
VpaK11BI	GGWCC	1 cut(s)	893
XapI	RAATTY	1 cut(s)	914
XmnI	GAANNNNTTC	2 cut(s)	62, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.