Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010322

Physical Location & Seq

Genomic Coordinates Forward (+)

26474184 .. 26476653

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G285300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGACCAGAAAACCCCTCTCCAAACCCACCCAGAAGCCTCACCAAAACCCAACAAGAAAAGCTTCGTCACCACTTTCATGGAAGCCACCACTCTCCGCACCCCATCTTTCAAAGAGGACACGTACTTCGTCTCACAGCTAAAATCCTCAGAGAAGAAAGCGCTTCAAGAGCTCAAGGACAAGCTCATGGGCTCTGAAGCCTCCGACGGGTCCATGTGGGGGGTTCCCCTGTTGGGCAACGACGAAAAGGCCGATGTGATTCTATTGAAGTTTCTCAGAGCCAGAGACTTCAGGGTCCCTGACGCTTTCGCCATGCTGCTCAAGTGCCTGGCTTGGAGAAAAGAGTTTGGAGCAGACGGCGTCGTTGAGGAGGACCTGGGGTTCAAGGAGCTTGAAGGAGTTGTGGCTTATATGCACGGCTTTGACAAACAGGGCCACCCTGTTTGCTACAACGCCTATGGAGTTTTCAAGGACAGAGATATGTACGAGAGAATTTTTGGGGATGACGAGAAGCTAAAGAAGTTTCTGAGGTGGAGAGTTCAGGTTCTTGAGAGGGGCATCAACGCCTTGCATTTTAAGCCTGGTGGGATTAACTCCATCATCCAAGTCACTGATCTCAAAGACATGCCCAAAAGAGAGCTCAGGGTTGCCTCTAACCAGATCCTCTCTCTGTTTCAAGACAACTACCCTGAAATGGTTGCTCGCAAGATTTTCATCAATGTGCCGTGGTACTTCAGCGCGTTGTATTCTCTATTCAGTCCGTTTCTGACCCAACGAACTAAGAGCAAGTTTGTGATATCTAAGGAAGGAAATGTTGCAGAAACACTATACAAGTTTATAAGGCCTGAGGACGTTCCAGTTCAGTATGGTGGCCTGAGTCGTCTCAGTGATCTGCAAAATGGTCCCCCAAAACCAGCTTCCGAGTTCACTGTCAAAGGAGGAGAGAAAGTGAACATACAGATCGAGGGGATTGAGGCTGATGCTACAATAACATGGGATATAGTAGTTGGAGGGTGGGACTTGGAGTACAGTGCAGAGTTTGTGCCCAATGCAGAAGGCAGCTACATAATCCAAGTGGACAAGCCAAGAAAGGTGATGCCCTCTGAAGAAGCAATCCACAACTCCTTTACTCCTCGTGAAGCAGGCAAGATGGTTTTCTCGGTTGACAACAGCGCCTCCCGCAGGAGAAAGGTAGCTGCCTATCGTTACATTGTCCGCAAATCGGCCTCTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

412

Amino Acids

46.71

Weight (kDa)

8.69

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51670
fragaria_vesca	FvH4_6g10580
malus_domestica	MD04G1167000.v1.1 MD12G1180600.v1.1
prunus_persica	Prupe.6G285300_v2.0.a1 Prupe.6G285300_v2.0.a1
pyrus_communis	pycom04g14840 pycom12g17020
rosa_chinensis	RchiOBHm_Chr3g0461561
rosa_laevigata	RLG00000014119 RLG00000024918
rosa_multiflora	Rmu_co8289033.1_g000001 Rmu_ssc0000193.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418140 Rroxscaffold_6G00418510
rosa_rugosa	Rorug03G0051900 Rorug06G0023600
rosa_samantha	Rh3AG110000 Rh3BG113300 Rh3DG114900
rosa_wichuraiana	Rw3G009300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	839
AasI	GACNNNNNNGTC	1 cut(s)	293
AccII	CGCG	1 cut(s)	740
AciI	CCGC	3 cut(s)	97, 1180, 1216
AclWI	GGATC	1 cut(s)	655
AcsI	RAATTY	1 cut(s)	492
AcuI	CTGAAG	4 cut(s)	216, 274, 718, 1125
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	4 cut(s)	125, 485, 731, 1028
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	6 cut(s)	207, 219, 233, 694, 1182, 1222
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	7 cut(s)	112, 167, 268, 385, 395, 469, 677
AjnI	CCWGG	3 cut(s)	327, 375, 580
AjuI	GAANNNNNNNTTGG	2 cut(s)	901, 933
AloI	GAACNNNNNNTCC	2 cut(s)	365, 397
Alw21I	GWGCWC	2 cut(s)	174, 642
Alw26I	GTCTC	3 cut(s)	136, 279, 887
AlwI	GGATC	1 cut(s)	655
Aor51HI	AGCGCT	1 cut(s)	162
AoxI	GGCC	5 cut(s)	249, 433, 842, 871, 1224
ApeKI	GCWGC	3 cut(s)	316, 1059, 1196
ApoI	RAATTY	1 cut(s)	492
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
Asp700I	GAANNNNTTC	1 cut(s)	62
AspLEI	GCGC	3 cut(s)	163, 740, 1175
AspS9I	GGNCC	6 cut(s)	4, 210, 295, 373, 433, 902
AsuHPI	GGTGA	3 cut(s)	33, 61, 1105
AvaII	GGWCC	5 cut(s)	4, 210, 295, 373, 902
AxyI	CCTNAGG	1 cut(s)	846
BaeGI	GKGCMC	1 cut(s)	1047
BanII	GRGCYC	3 cut(s)	174, 194, 642
BauI	CACGAG	1 cut(s)	1134
Bbv12I	GWGCWC	2 cut(s)	174, 642
BbvI	GCAGC	3 cut(s)	303, 1071, 1183
BccI	CCATC	3 cut(s)	112, 605, 1144
BceAI	ACGGC	3 cut(s)	373, 433, 709
BciT130I	CCWGG	3 cut(s)	329, 377, 582
BcoDI	GTCTC	3 cut(s)	136, 279, 887
BfoI	RGCGCY	2 cut(s)	164, 1176
BisI	GCNGC	3 cut(s)	317, 1060, 1197
BlsI	GCNGC	3 cut(s)	318, 1061, 1198
Bme1390I	CCNGG	3 cut(s)	329, 377, 582
Bme18I	GGWCC	5 cut(s)	4, 210, 295, 373, 902
BmgT120I	GGNCC	6 cut(s)	4, 210, 295, 373, 433, 902
BmiI	GGNNCC	5 cut(s)	211, 225, 296, 297, 904
BmrFI	CCNGG	3 cut(s)	329, 377, 582
BmsI	GCATC	3 cut(s)	567, 970, 1086
Bpu10I	CCTNAGC	1 cut(s)	641
BpuEI	CTTGAG	3 cut(s)	158, 305, 569
BsaAI	YACGTR	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	713
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	376, 725
BsaXI	ACNNNNNCTCC	4 cut(s)	933, 963, 1160, 1190
Bsc4I	CCNNNNNNNGG	6 cut(s)	207, 219, 233, 694, 1182, 1222
Bse1I	ACTGG	1 cut(s)	857
Bse21I	CCTNAGG	1 cut(s)	846
Bse8I	GATNNNNATC	1 cut(s)	713
BseBI	CCWGG	3 cut(s)	329, 377, 582
BseDI	CCNNGG	2 cut(s)	376, 725
BseGI	GGATG	2 cut(s)	508, 600
BseJI	GATNNNNATC	1 cut(s)	713
BseLI	CCNNNNNNNGG	6 cut(s)	207, 219, 233, 694, 1182, 1222
BseMII	CTCAG	7 cut(s)	162, 289, 518, 655, 837, 866, 898
BseNI	ACTGG	1 cut(s)	857
BseRI	GAGGAG	3 cut(s)	383, 954, 1122
BseSI	GKGCMC	1 cut(s)	1047
BseXI	GCAGC	3 cut(s)	303, 1071, 1183
BsgI	GTGCAG	1 cut(s)	1053
Bsh1236I	CGCG	1 cut(s)	740
BshFI	GGCC	5 cut(s)	251, 435, 844, 873, 1226
BsiHKAI	GWGCWC	2 cut(s)	174, 642
BslFI	GGGAC	3 cut(s)	281, 888, 1031
BslI	CCNNNNNNNGG	6 cut(s)	207, 219, 233, 694, 1182, 1222
BsmAI	GTCTC	3 cut(s)	136, 279, 887
BsmBI	CGTCTC	2 cut(s)	136, 887
BsmFI	GGGAC	3 cut(s)	281, 888, 1031
BsnI	GGCC	5 cut(s)	251, 435, 844, 873, 1226
Bsp1286I	GDGCHC	4 cut(s)	174, 194, 642, 1047
Bsp143I	GATC	4 cut(s)	613, 660, 889, 960
BspACI	CCGC	3 cut(s)	97, 1180, 1216
BspANI	GGCC	5 cut(s)	251, 435, 844, 873, 1226
BspCNI	CTCAG	7 cut(s)	161, 288, 519, 654, 838, 867, 897
BspFNI	CGCG	1 cut(s)	740
BspLI	GGNNCC	5 cut(s)	211, 225, 296, 297, 904
BspPI	GGATC	1 cut(s)	655
BsrI	ACTGG	1 cut(s)	857
BssECI	CCNNGG	2 cut(s)	376, 725
BssMI	GATC	4 cut(s)	613, 660, 889, 960
BssNI	GRCGYC	1 cut(s)	360
BssSI	CACGAG	1 cut(s)	1134
Bst2BI	CACGAG	1 cut(s)	1134
Bst2UI	CCWGG	3 cut(s)	329, 377, 582
Bst4CI	ACNGT	2 cut(s)	931, 1031
BstACI	GRCGYC	1 cut(s)	360
BstBAI	YACGTR	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	703, 1144
BstDEI	CTNAG	9 cut(s)	148, 275, 527, 641, 780, 801, 846, 875, 884
BstDSI	CCRYGG	1 cut(s)	725
BstENI	CCTNNNNNAGG	1 cut(s)	1180
BstF5I	GGATG	2 cut(s)	508, 600
BstFNI	CGCG	1 cut(s)	740
BstH2I	RGCGCY	2 cut(s)	164, 1176
BstHHI	GCGC	3 cut(s)	163, 740, 1175
BstKTI	GATC	4 cut(s)	616, 663, 892, 963
BstMAI	GTCTC	3 cut(s)	136, 279, 887
BstMBI	GATC	4 cut(s)	613, 660, 889, 960
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 577, 1179
BstNI	CCWGG	3 cut(s)	329, 377, 582
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	3 cut(s)	327, 375, 580
BstSLI	GKGCMC	1 cut(s)	1047
BstUI	CGCG	1 cut(s)	740
BstV1I	GCAGC	3 cut(s)	303, 1071, 1183
BstX2I	RGATCY	1 cut(s)	660
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	660
Bsu36I	CCTNAGG	1 cut(s)	846
BsuRI	GGCC	5 cut(s)	251, 435, 844, 873, 1226
BtgI	CCRYGG	1 cut(s)	725
BtsCI	GGATG	2 cut(s)	508, 600
BtsIMutI	CAGTG	4 cut(s)	609, 892, 927, 1036
Cac8I	GCNNGC	2 cut(s)	703, 1144
CfoI	GCGC	3 cut(s)	163, 740, 1175
Cfr13I	GGNCC	6 cut(s)	4, 210, 295, 373, 433, 902
CseI	GACGC	2 cut(s)	311, 349
Csp6I	GTAC	4 cut(s)	124, 484, 730, 1027
CspCI	CAANNNNNGTGG	2 cut(s)	425, 460
CviAII	CATG	6 cut(s)	79, 187, 214, 313, 625, 993
CviQI	GTAC	4 cut(s)	124, 484, 730, 1027
DdeI	CTNAG	9 cut(s)	148, 275, 527, 641, 780, 801, 846, 875, 884
DpnI	GATC	4 cut(s)	615, 662, 891, 962
DpnII	GATC	4 cut(s)	613, 660, 889, 960
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Ecl136II	GAGCTC	2 cut(s)	172, 640
Eco147I	AGGCCT	1 cut(s)	844
Eco24I	GRGCYC	3 cut(s)	174, 194, 642
Eco32I	GATATC	1 cut(s)	798
Eco47I	GGWCC	5 cut(s)	4, 210, 295, 373, 902
Eco47III	AGCGCT	1 cut(s)	162
Eco53kI	GAGCTC	2 cut(s)	172, 640
Eco57I	CTGAAG	4 cut(s)	216, 274, 718, 1125
Eco81I	CCTNAGG	1 cut(s)	846
EcoICRI	GAGCTC	2 cut(s)	172, 640
EcoNI	CCTNNNNNAGG	1 cut(s)	1180
EcoO109I	RGGNCCY	2 cut(s)	295, 373
EcoRII	CCWGG	3 cut(s)	327, 375, 580
EcoRV	GATATC	1 cut(s)	798
EcoT38I	GRGCYC	3 cut(s)	174, 194, 642
Esp3I	CGTCTC	2 cut(s)	136, 887
FaeI	CATG	6 cut(s)	82, 190, 217, 316, 628, 996
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FaqI	GGGAC	3 cut(s)	281, 888, 1031
FatI	CATG	6 cut(s)	78, 186, 213, 312, 624, 992
FauI	CCCGC	1 cut(s)	1187
Fnu4HI	GCNGC	3 cut(s)	317, 1060, 1197
FokI	GGATG	2 cut(s)	515, 587
FriOI	GRGCYC	3 cut(s)	174, 194, 642
Fsp4HI	GCNGC	3 cut(s)	317, 1060, 1197
GlaI	GCGC	3 cut(s)	162, 739, 1174
GluI	GCNGC	3 cut(s)	317, 1060, 1197
HaeII	RGCGCY	2 cut(s)	164, 1176
HaeIII	GGCC	5 cut(s)	251, 435, 844, 873, 1226
HgaI	GACGC	2 cut(s)	311, 349
HhaI	GCGC	3 cut(s)	163, 740, 1175
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	6 cut(s)	82, 190, 217, 316, 628, 996
Hin6I	GCGC	3 cut(s)	161, 738, 1173
HinP1I	GCGC	3 cut(s)	161, 738, 1173
HincII	GTYRAC	1 cut(s)	1165
HindII	GTYRAC	1 cut(s)	1165
HindIII	AAGCTT	1 cut(s)	61
HinfI	GANTC	2 cut(s)	259, 877
HphI	GGTGA	3 cut(s)	33, 61, 1105
Hpy166II	GTNNAC	4 cut(s)	927, 952, 1078, 1165
Hpy188I	TCNGA	8 cut(s)	151, 196, 205, 278, 528, 768, 922, 1105
Hpy188III	TCNNGA	4 cut(s)	167, 548, 677, 1136
Hpy8I	GTNNAC	4 cut(s)	927, 952, 1078, 1165
Hpy99I	CGWCG	3 cut(s)	209, 245, 365
HpyAV	CCTTC	3 cut(s)	389, 800, 1049
HpyCH4III	ACNGT	2 cut(s)	931, 1031
HpyCH4IV	ACGT	2 cut(s)	122, 852
HpyCH4V	TGCA	6 cut(s)	415, 571, 818, 895, 1034, 1052
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 577, 1179
HpyF3I	CTNAG	9 cut(s)	148, 275, 527, 641, 780, 801, 846, 875, 884
HpySE526I	ACGT	2 cut(s)	122, 852
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	6 cut(s)	82, 190, 217, 316, 628, 996
HspAI	GCGC	3 cut(s)	161, 738, 1173
KflI	GGGWCCC	1 cut(s)	295
Kzo9I	GATC	4 cut(s)	613, 660, 889, 960
LmnI	GCTCC	2 cut(s)	350, 388
Lsp1109I	GCAGC	3 cut(s)	303, 1071, 1183
LweI	GCATC	3 cut(s)	567, 970, 1086
MaeII	ACGT	2 cut(s)	122, 852
MaeIII	GTNAC	3 cut(s)	67, 607, 1205
MalI	GATC	4 cut(s)	615, 662, 891, 962
MboI	GATC	4 cut(s)	613, 660, 889, 960
MboII	GAAGA	2 cut(s)	166, 1118
MflI	RGATCY	1 cut(s)	660
MhlI	GDGCHC	4 cut(s)	174, 194, 642, 1047
MluCI	AATT	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	886
MmeI	TCCRAC	2 cut(s)	228, 988
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	2 cut(s)	576, 591
MslI	CAYNNNNRTG	2 cut(s)	77, 719
MspR9I	CCNGG	3 cut(s)	329, 377, 582
MvaI	CCWGG	3 cut(s)	329, 377, 582
MvnI	CGCG	1 cut(s)	740
MwoI	GCNNNNNNNGC	3 cut(s)	169, 577, 1179
NdeII	GATC	4 cut(s)	613, 660, 889, 960
NlaIII	CATG	6 cut(s)	82, 190, 217, 316, 628, 996
NlaIV	GGNNCC	5 cut(s)	211, 225, 296, 297, 904
NmuCI	GTSAC	2 cut(s)	67, 607
NspI	RCATGY	1 cut(s)	628
PceI	AGGCCT	1 cut(s)	844
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	259
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	3 cut(s)	318, 1061, 1198
PleI	GAGTC	1 cut(s)	885
PpsI	GAGTC	1 cut(s)	885
Ppu21I	YACGTR	1 cut(s)	123
PpuMI	RGGWCCY	2 cut(s)	295, 373
PsiI	TTATAA	1 cut(s)	839
Psp124BI	GAGCTC	2 cut(s)	174, 642
Psp5II	RGGWCCY	2 cut(s)	295, 373
Psp6I	CCWGG	3 cut(s)	327, 375, 580
PspGI	CCWGG	3 cut(s)	327, 375, 580
PspN4I	GGNNCC	5 cut(s)	211, 225, 296, 297, 904
PspPI	GGNCC	6 cut(s)	4, 210, 295, 373, 433, 902
PspPPI	RGGWCCY	2 cut(s)	295, 373
PsuI	RGATCY	1 cut(s)	660
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	4 cut(s)	125, 485, 731, 1028
RsaNI	GTAC	4 cut(s)	124, 484, 730, 1027
RseI	CAYNNNNRTG	2 cut(s)	77, 719
SacI	GAGCTC	2 cut(s)	174, 642
SaqAI	TTAA	2 cut(s)	576, 591
SatI	GCNGC	3 cut(s)	317, 1060, 1197
Sau3AI	GATC	4 cut(s)	613, 660, 889, 960
Sau96I	GGNCC	6 cut(s)	4, 210, 295, 373, 433, 902
SchI	GAGTC	1 cut(s)	886
ScrFI	CCNGG	3 cut(s)	329, 377, 582
SduI	GDGCHC	4 cut(s)	174, 194, 642, 1047
SfaNI	GCATC	3 cut(s)	567, 970, 1086
SinI	GGWCC	5 cut(s)	4, 210, 295, 373, 902
SmiMI	CAYNNNNRTG	2 cut(s)	77, 719
SmlI	CTYRAG	3 cut(s)	173, 320, 548
SmoI	CTYRAG	3 cut(s)	173, 320, 548
Sse9I	AATT	1 cut(s)	492
SseBI	AGGCCT	1 cut(s)	844
SsiI	CCGC	3 cut(s)	97, 1180, 1216
SstI	GAGCTC	2 cut(s)	174, 642
StuI	AGGCCT	1 cut(s)	844
StyD4I	CCNGG	3 cut(s)	327, 375, 580
TaaI	ACNGT	2 cut(s)	931, 1031
TaiI	ACGT	2 cut(s)	125, 855
TaqI	TCGA	1 cut(s)	963
TasI	AATT	1 cut(s)	492
TatI	WGTACW	1 cut(s)	1026
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	576, 591
Tru9I	TTAA	2 cut(s)	576, 591
TscAI	CASTG	4 cut(s)	616, 892, 934, 1036
TseFI	GTSAC	2 cut(s)	67, 607
TseI	GCWGC	3 cut(s)	316, 1059, 1196
Tsp45I	GTSAC	2 cut(s)	67, 607
TspDTI	ATGAA	2 cut(s)	67, 703
TspGWI	ACGGA	1 cut(s)	750
TspRI	CASTG	4 cut(s)	616, 892, 934, 1036
Tth111I	GACNNNGTC	1 cut(s)	359
VpaK11BI	GGWCC	5 cut(s)	4, 210, 295, 373, 902
XagI	CCTNNNNNAGG	1 cut(s)	1180
XapI	RAATTY	1 cut(s)	492
XceI	RCATGY	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.